Wall clock time and date at job start Tue Mar 31 2020 18:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46984 * 2 1 4 4 N 1.46499 * 109.47060 * 239.99765 * 2 1 3 5 5 C 1.34777 * 119.99523 * 84.72659 * 4 2 1 6 6 O 1.21689 * 120.00410 * 0.27536 * 5 4 2 7 7 C 1.46659 * 119.99473 * 180.27286 * 5 4 2 8 8 C 1.36547 * 125.98786 * 179.71546 * 7 5 4 9 9 C 1.40364 * 106.70983 * 179.91110 * 8 7 5 10 10 C 1.35130 * 107.11329 * 0.35285 * 9 8 7 11 11 O 1.33929 * 108.76710 * 359.77741 * 10 9 8 12 12 C 1.50700 * 109.47111 * 119.99708 * 2 1 3 13 13 O 1.21281 * 120.00032 * 97.26408 * 12 2 1 14 14 N 1.34773 * 120.00428 * 277.26723 * 12 2 1 15 15 C 1.46931 * 120.62773 * 4.79575 * 14 12 2 16 16 C 1.52760 * 109.00677 * 233.58582 * 15 14 12 17 17 C 1.53044 * 109.38465 * 305.58715 * 16 15 14 18 18 C 1.52999 * 109.45050 * 181.25596 * 17 16 15 19 19 C 1.50694 * 109.47325 * 64.93746 * 18 17 16 20 20 H 1.07997 * 120.00173 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00166 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99812 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00057 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46976 * 60.00313 * 23 21 19 25 25 H 1.48502 * 109.47110 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47272 * 300.00032 * 23 21 19 27 27 C 1.53045 * 109.53637 * 61.24094 * 17 16 15 28 28 C 1.46926 * 120.63245 * 185.07668 * 14 12 2 29 29 H 1.08999 * 109.47116 * 56.04067 * 1 2 3 30 30 H 1.09000 * 109.46648 * 176.04073 * 1 2 3 31 31 H 1.09004 * 109.46961 * 296.04354 * 1 2 3 32 32 H 0.96999 * 119.99904 * 264.99419 * 4 2 1 33 33 H 1.08007 * 126.64250 * 0.03347 * 8 7 5 34 34 H 1.07998 * 126.43986 * 180.15435 * 9 8 7 35 35 H 1.07996 * 125.61441 * 179.78516 * 10 9 8 36 36 H 1.08998 * 109.58584 * 353.41739 * 15 14 12 37 37 H 1.08995 * 109.58745 * 113.84545 * 15 14 12 38 38 H 1.09003 * 109.56714 * 185.55439 * 16 15 14 39 39 H 1.08997 * 109.36360 * 65.49785 * 16 15 14 40 40 H 1.08998 * 109.45669 * 301.22174 * 17 16 15 41 41 H 1.08995 * 109.47049 * 184.94022 * 18 17 16 42 42 H 1.09002 * 109.47346 * 304.93572 * 18 17 16 43 43 H 0.97001 * 119.99860 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.49498 * 178.68539 * 27 17 16 45 45 H 1.08998 * 109.52167 * 58.60679 * 27 17 16 46 46 H 1.09002 * 109.58559 * 246.15199 * 28 14 12 47 47 H 1.08992 * 109.58808 * 6.43637 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1418 -0.0196 -2.3584 6 8 1.8524 1.1611 -2.4131 7 6 2.6250 -0.7125 -3.5573 8 6 2.7909 -0.1564 -4.7934 9 6 3.2706 -1.1741 -5.6326 10 6 3.3677 -2.2946 -4.8835 11 8 2.9779 -2.0124 -3.6337 12 6 2.0324 -0.7103 1.2305 13 8 2.3597 -1.8764 1.1664 14 7 2.1178 -0.0500 2.4022 15 6 1.6276 1.3300 2.5212 16 6 2.7435 2.2075 3.0854 17 6 3.2495 1.6045 4.3979 18 6 4.3457 2.4989 4.9803 19 6 3.7580 3.8352 5.3541 20 1 2.7075 4.0272 5.1929 21 6 4.5611 4.8124 5.9030 22 7 5.8401 4.5784 6.0998 23 14 3.8326 6.4690 6.3658 24 1 2.7627 6.2742 7.3770 25 1 4.8966 7.3371 6.9312 26 1 3.2596 7.1130 5.1566 27 6 3.8174 0.2080 4.1341 28 6 2.7085 -0.6941 3.5833 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3632 -1.0252 -0.0710 31 1 -0.3633 0.4512 0.9234 32 1 2.2491 -1.6318 -1.1525 33 1 2.5933 0.8685 -5.0709 34 1 3.5132 -1.0801 -6.6808 35 1 3.7044 -3.2587 -5.2348 36 1 1.3353 1.7000 1.5385 37 1 0.7703 1.3566 3.1938 38 1 2.3607 3.2113 3.2700 39 1 3.5626 2.2563 2.3679 40 1 2.4244 1.5331 5.1065 41 1 4.7671 2.0263 5.8674 42 1 5.1306 2.6422 4.2376 43 1 6.4052 5.2659 6.4857 44 1 4.1987 -0.2114 5.0651 45 1 4.6266 0.2752 3.4070 46 1 1.9411 -0.8360 4.3443 47 1 3.1268 -1.6604 3.3016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575001286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:12 Heat of formation + Delta-G solvation = -67.308349 kcal Electronic energy + Delta-G solvation = -28760.489528 eV Core-core repulsion = 24716.542996 eV Total energy + Delta-G solvation = -4043.946532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.00999 -40.69841 -39.39371 -37.53730 -35.33814 -34.14571 -33.42028 -32.36770 -31.59873 -30.68403 -29.64878 -28.10841 -25.51482 -24.47740 -23.26519 -22.84193 -22.11318 -21.52161 -20.61635 -19.95967 -19.34376 -18.52065 -17.17018 -16.78671 -16.63307 -16.30550 -16.22520 -15.58757 -15.28481 -14.73438 -14.55368 -14.43934 -13.92289 -13.76291 -13.54332 -13.43416 -13.34136 -13.18164 -13.03880 -12.87817 -12.64912 -12.45342 -12.23090 -11.92859 -11.81102 -11.21862 -11.04795 -10.84377 -10.72736 -10.61866 -10.50661 -10.41923 -10.19469 -9.92838 -9.66547 -9.50339 -9.31118 -9.03202 -9.01393 -8.48707 -8.36891 -6.01712 -4.04065 0.72501 2.00152 2.23409 2.46317 2.73833 2.88317 3.17026 3.31237 3.36574 3.37924 4.22408 4.34054 4.43654 4.54439 4.65712 4.81847 4.83208 5.05825 5.25230 5.27971 5.32374 5.35367 5.39671 5.40954 5.44236 5.50069 5.56274 5.62066 5.66782 5.87042 5.90933 5.95139 5.97649 5.99906 6.28157 6.32480 6.44942 6.46444 6.58210 6.89716 6.94347 7.06388 7.16281 7.37445 7.63789 7.76281 7.78069 7.97401 8.02320 8.39340 9.02149 9.59916 11.09475 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.002401 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.223777 B =11658.780013 C =12317.106774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 H 0.118 0.882 4 N -0.703 5.703 5 C 0.607 3.393 6 O -0.517 6.517 7 C -0.078 4.078 8 C -0.118 4.118 9 C -0.226 4.226 10 C -0.005 4.005 11 O -0.162 6.162 12 C 0.513 3.487 13 O -0.547 6.547 14 N -0.596 5.596 15 C 0.096 3.904 16 C -0.121 4.121 17 C -0.081 4.081 18 C 0.028 3.972 19 C -0.518 4.518 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.890 3.110 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 C -0.130 4.130 28 C 0.113 3.887 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.415 0.585 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.211 0.789 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.261 0.739 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.975 -14.001 -19.434 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 H 0.135 0.865 4 N -0.356 5.356 5 C 0.393 3.607 6 O -0.395 6.395 7 C -0.130 4.130 8 C -0.139 4.139 9 C -0.246 4.246 10 C -0.075 4.075 11 O -0.057 6.057 12 C 0.300 3.700 13 O -0.426 6.426 14 N -0.328 5.328 15 C -0.026 4.026 16 C -0.159 4.159 17 C -0.099 4.099 18 C -0.009 4.009 19 C -0.556 4.556 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.717 3.283 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.202 1.202 27 C -0.168 4.168 28 C -0.009 4.009 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.253 0.747 33 H 0.179 0.821 34 H 0.175 0.825 35 H 0.227 0.773 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.862 -13.880 -19.119 25.233 hybrid contribution -0.035 0.671 0.123 0.683 sum -8.897 -13.209 -18.995 24.788 Atomic orbital electron populations 1.22137 0.92265 1.03473 1.03909 1.20907 0.96194 0.98213 0.83206 0.86467 1.45678 1.66553 1.15161 1.08203 1.16498 0.77587 0.85652 0.80962 1.90903 1.50523 1.14019 1.84027 1.21986 1.11265 0.82724 0.97027 1.22009 0.99506 1.01329 0.91032 1.21885 1.07908 0.92863 1.01895 1.24456 1.00823 1.00982 0.81224 1.84093 1.63863 1.26392 1.31378 1.20382 0.78163 0.86930 0.84522 1.90665 1.50607 1.16242 1.85039 1.48117 1.59530 1.15107 1.10092 1.22036 0.98188 0.80497 1.01857 1.21851 0.97022 0.99300 0.97735 1.21200 0.99975 0.93184 0.95587 1.19114 0.92748 0.93360 0.95678 1.21186 0.95175 0.98294 1.40957 0.92623 1.25024 0.94853 0.98680 0.95896 1.69949 1.04706 1.34194 1.44581 0.86701 0.78710 0.84026 0.78815 1.20292 1.21377 1.20237 1.22039 0.97180 0.96664 1.00909 1.21725 0.96257 0.96949 0.85991 0.90547 0.91499 0.90447 0.74747 0.82063 0.82489 0.77256 0.90115 0.90885 0.89360 0.92180 0.92216 0.96579 0.96641 0.92965 0.90934 0.92051 0.91509 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.21 37.16 0.34 -1.22 16 2 C 0.12 1.47 2.11 -69.08 -0.15 1.33 16 3 H 0.12 1.47 6.05 -51.93 -0.31 1.16 16 4 N -0.70 -8.44 5.05 -56.25 -0.28 -8.72 16 5 C 0.61 7.74 7.75 -12.86 -0.10 7.64 16 6 O -0.52 -7.81 16.53 5.20 0.09 -7.73 16 7 C -0.08 -0.87 7.13 -36.80 -0.26 -1.13 16 8 C -0.12 -1.14 10.62 -39.39 -0.42 -1.56 16 9 C -0.23 -1.62 10.87 -39.89 -0.43 -2.06 16 10 C 0.00 -0.03 12.08 29.63 0.36 0.33 16 11 O -0.16 -1.58 10.40 5.01 0.05 -1.53 16 12 C 0.51 7.16 6.92 -10.99 -0.08 7.09 16 13 O -0.55 -8.89 15.40 5.56 0.09 -8.80 16 14 N -0.60 -8.21 2.98 -173.03 -0.52 -8.72 16 15 C 0.10 1.24 5.65 -3.93 -0.02 1.22 16 16 C -0.12 -2.01 5.17 -26.83 -0.14 -2.15 16 17 C -0.08 -1.51 2.10 -90.57 -0.19 -1.70 16 18 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 19 C -0.52 -13.83 8.39 -34.44 -0.29 -14.12 16 20 H 0.06 1.42 7.06 -52.49 -0.37 1.05 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 23 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C -0.13 -2.10 5.36 -26.61 -0.14 -2.25 16 28 C 0.11 1.59 6.42 -3.71 -0.02 1.57 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.67 7.15 -51.93 -0.37 0.30 16 32 H 0.41 4.84 7.51 -40.82 -0.31 4.53 16 33 H 0.16 1.43 8.06 -52.48 -0.42 1.00 16 34 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.21 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.08 0.89 5.06 -51.93 -0.26 0.63 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.56 6.91 -51.93 -0.36 1.20 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.24 7.03 -51.93 -0.37 0.87 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -32.84 384.87 -7.81 -40.64 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.98 Total: 3.60 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.76 Total: -4.97 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.06 Total: -43.15 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.22 Total: -18.06 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.84 -7.81 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575001286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.664 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds