Wall clock time and date at job start Tue Mar 31 2020 18:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46984 * 2 1 4 4 N 1.46499 * 109.47060 * 239.99765 * 2 1 3 5 5 C 1.34777 * 119.99523 * 84.72659 * 4 2 1 6 6 O 1.21689 * 120.00410 * 0.27536 * 5 4 2 7 7 C 1.46659 * 119.99473 * 180.27286 * 5 4 2 8 8 C 1.36547 * 125.98786 * 179.71546 * 7 5 4 9 9 C 1.40364 * 106.70983 * 179.91110 * 8 7 5 10 10 C 1.35130 * 107.11329 * 0.35285 * 9 8 7 11 11 O 1.33929 * 108.76710 * 359.77741 * 10 9 8 12 12 C 1.50700 * 109.47111 * 119.99708 * 2 1 3 13 13 O 1.21281 * 120.00032 * 97.26408 * 12 2 1 14 14 N 1.34773 * 120.00428 * 277.26723 * 12 2 1 15 15 C 1.46931 * 120.62773 * 4.79575 * 14 12 2 16 16 C 1.52760 * 109.00677 * 233.58582 * 15 14 12 17 17 C 1.53044 * 109.38465 * 305.58715 * 16 15 14 18 18 C 1.52999 * 109.45050 * 181.25596 * 17 16 15 19 19 C 1.50694 * 109.47325 * 64.93746 * 18 17 16 20 20 H 1.07997 * 120.00173 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00166 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99812 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00057 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46976 * 60.00313 * 23 21 19 25 25 H 1.48502 * 109.47110 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47272 * 300.00032 * 23 21 19 27 27 C 1.53045 * 109.53637 * 61.24094 * 17 16 15 28 28 C 1.46926 * 120.63245 * 185.07668 * 14 12 2 29 29 H 1.08999 * 109.47116 * 56.04067 * 1 2 3 30 30 H 1.09000 * 109.46648 * 176.04073 * 1 2 3 31 31 H 1.09004 * 109.46961 * 296.04354 * 1 2 3 32 32 H 0.96999 * 119.99904 * 264.99419 * 4 2 1 33 33 H 1.08007 * 126.64250 * 0.03347 * 8 7 5 34 34 H 1.07998 * 126.43986 * 180.15435 * 9 8 7 35 35 H 1.07996 * 125.61441 * 179.78516 * 10 9 8 36 36 H 1.08998 * 109.58584 * 353.41739 * 15 14 12 37 37 H 1.08995 * 109.58745 * 113.84545 * 15 14 12 38 38 H 1.09003 * 109.56714 * 185.55439 * 16 15 14 39 39 H 1.08997 * 109.36360 * 65.49785 * 16 15 14 40 40 H 1.08998 * 109.45669 * 301.22174 * 17 16 15 41 41 H 1.08995 * 109.47049 * 184.94022 * 18 17 16 42 42 H 1.09002 * 109.47346 * 304.93572 * 18 17 16 43 43 H 0.97001 * 119.99860 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.49498 * 178.68539 * 27 17 16 45 45 H 1.08998 * 109.52167 * 58.60679 * 27 17 16 46 46 H 1.09002 * 109.58559 * 246.15199 * 28 14 12 47 47 H 1.08992 * 109.58808 * 6.43637 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1418 -0.0196 -2.3584 6 8 1.8524 1.1611 -2.4131 7 6 2.6250 -0.7125 -3.5573 8 6 2.7909 -0.1564 -4.7934 9 6 3.2706 -1.1741 -5.6326 10 6 3.3677 -2.2946 -4.8835 11 8 2.9779 -2.0124 -3.6337 12 6 2.0324 -0.7103 1.2305 13 8 2.3597 -1.8764 1.1664 14 7 2.1178 -0.0500 2.4022 15 6 1.6276 1.3300 2.5212 16 6 2.7435 2.2075 3.0854 17 6 3.2495 1.6045 4.3979 18 6 4.3457 2.4989 4.9803 19 6 3.7580 3.8352 5.3541 20 1 2.7075 4.0272 5.1929 21 6 4.5611 4.8124 5.9030 22 7 5.8401 4.5784 6.0998 23 14 3.8326 6.4690 6.3658 24 1 2.7627 6.2742 7.3770 25 1 4.8966 7.3371 6.9312 26 1 3.2596 7.1130 5.1566 27 6 3.8174 0.2080 4.1341 28 6 2.7085 -0.6941 3.5833 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3632 -1.0252 -0.0710 31 1 -0.3633 0.4512 0.9234 32 1 2.2491 -1.6318 -1.1525 33 1 2.5933 0.8685 -5.0709 34 1 3.5132 -1.0801 -6.6808 35 1 3.7044 -3.2587 -5.2348 36 1 1.3353 1.7000 1.5385 37 1 0.7703 1.3566 3.1938 38 1 2.3607 3.2113 3.2700 39 1 3.5626 2.2563 2.3679 40 1 2.4244 1.5331 5.1065 41 1 4.7671 2.0263 5.8674 42 1 5.1306 2.6422 4.2376 43 1 6.4052 5.2659 6.4857 44 1 4.1987 -0.2114 5.0651 45 1 4.6266 0.2752 3.4070 46 1 1.9411 -0.8360 4.3443 47 1 3.1268 -1.6604 3.3016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575001286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:11 Heat of formation + Delta-G solvation = -88.564215 kcal Electronic energy + Delta-G solvation = -28761.411252 eV Core-core repulsion = 24716.542996 eV Total energy + Delta-G solvation = -4044.868256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.67178 -41.77700 -40.43547 -38.84286 -36.33218 -35.76571 -34.15704 -34.02334 -32.73556 -31.77126 -30.43178 -29.78597 -26.81193 -25.71916 -24.40455 -24.09885 -22.97682 -22.67969 -21.51751 -21.21711 -20.38532 -19.57853 -18.41828 -18.13199 -17.69465 -17.39111 -17.15406 -16.64253 -16.52228 -16.25726 -15.72708 -15.44639 -15.19881 -15.07761 -14.66934 -14.57675 -14.32692 -14.21306 -13.98564 -13.91166 -13.64144 -13.54691 -13.41112 -13.30974 -12.96772 -12.83877 -12.69645 -12.48795 -12.33838 -12.13431 -11.78480 -11.60802 -11.37914 -11.19133 -11.06847 -10.86608 -10.84212 -10.50645 -10.48205 -9.71508 -9.68229 -8.15555 -6.25005 -0.02790 1.25485 1.40950 1.42469 1.44679 1.51907 1.54983 1.85247 2.01626 2.21481 2.43544 3.18191 3.19761 3.63542 3.83653 3.93374 3.94137 3.97777 4.02501 4.08950 4.10409 4.17454 4.39433 4.50864 4.54730 4.60614 4.66002 4.69788 4.79547 4.87535 4.89053 4.93316 4.94525 5.02831 5.09840 5.12382 5.29610 5.32442 5.37858 5.38962 5.51499 5.57756 5.79455 5.82010 5.90252 6.25043 6.26784 6.30481 6.82378 6.91566 6.92127 7.43838 8.96238 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.002401 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.223777 B =11658.780013 C =12317.106774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.124 3.876 3 H 0.112 0.888 4 N -0.701 5.701 5 C 0.606 3.394 6 O -0.550 6.550 7 C -0.114 4.114 8 C -0.120 4.120 9 C -0.234 4.234 10 C 0.011 3.989 11 O -0.174 6.174 12 C 0.515 3.485 13 O -0.571 6.571 14 N -0.598 5.598 15 C 0.105 3.895 16 C -0.117 4.117 17 C -0.073 4.073 18 C 0.032 3.968 19 C -0.526 4.526 20 H 0.069 0.931 21 C -0.005 4.005 22 N -0.938 5.938 23 Si 0.960 3.040 24 H -0.265 1.265 25 H -0.291 1.291 26 H -0.266 1.266 27 C -0.123 4.123 28 C 0.120 3.880 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.416 0.584 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.255 0.745 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.041 0.959 40 H 0.068 0.932 41 H -0.013 1.013 42 H -0.018 1.018 43 H 0.260 0.740 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.011 -14.717 -20.764 27.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.016 3.984 3 H 0.130 0.870 4 N -0.353 5.353 5 C 0.394 3.606 6 O -0.431 6.431 7 C -0.166 4.166 8 C -0.141 4.141 9 C -0.252 4.252 10 C -0.058 4.058 11 O -0.070 6.070 12 C 0.303 3.697 13 O -0.451 6.451 14 N -0.329 5.329 15 C -0.017 4.017 16 C -0.155 4.155 17 C -0.092 4.092 18 C -0.005 4.005 19 C -0.564 4.564 20 H 0.087 0.913 21 C -0.202 4.202 22 N -0.579 5.579 23 Si 0.785 3.215 24 H -0.190 1.190 25 H -0.216 1.216 26 H -0.191 1.191 27 C -0.161 4.161 28 C -0.002 4.002 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.254 0.746 33 H 0.180 0.820 34 H 0.203 0.797 35 H 0.270 0.730 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.005 0.995 42 H 0.000 1.000 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.107 0.893 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.921 -14.607 -20.448 27.400 hybrid contribution 0.707 0.814 0.465 1.174 sum -10.213 -13.793 -19.983 26.342 Atomic orbital electron populations 1.22117 0.90265 1.03914 1.04792 1.20950 0.97673 0.97450 0.82326 0.87030 1.45686 1.66393 1.15132 1.08129 1.16710 0.77006 0.85384 0.81475 1.90867 1.52244 1.15279 1.84671 1.21746 1.14197 0.83743 0.96908 1.22293 0.98625 1.02014 0.91135 1.22244 1.07764 0.92118 1.03097 1.25426 0.98090 1.02495 0.79817 1.84085 1.64230 1.25661 1.33016 1.20664 0.77541 0.86657 0.84850 1.90653 1.51650 1.17397 1.85374 1.48165 1.59383 1.15364 1.10019 1.22042 0.97022 0.79143 1.03467 1.21737 0.97820 0.99659 0.96278 1.21046 0.98165 0.93373 0.96574 1.19017 0.93657 0.94045 0.93776 1.21653 0.95819 0.99014 1.39920 0.91277 1.25978 0.95190 1.02918 0.96095 1.70106 1.06315 1.35508 1.45980 0.85579 0.77946 0.79067 0.78944 1.19008 1.21638 1.19080 1.21922 0.97556 0.95845 1.00762 1.21634 0.95954 0.96024 0.86591 0.90534 0.91157 0.88767 0.74603 0.82045 0.79720 0.72951 0.87919 0.88380 0.90292 0.94003 0.91319 0.99496 1.00005 0.93108 0.90723 0.93805 0.89335 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.21 71.98 0.66 -2.05 16 2 C 0.12 2.86 2.11 44.25 0.09 2.95 16 3 H 0.11 2.72 6.05 -2.39 -0.01 2.71 16 4 N -0.70 -16.75 5.05 -450.09 -2.27 -19.02 16 5 C 0.61 15.69 7.75 86.44 0.67 16.36 16 6 O -0.55 -16.97 16.53 -4.31 -0.07 -17.04 16 7 C -0.11 -2.53 7.13 24.07 0.17 -2.36 16 8 C -0.12 -2.24 10.62 22.39 0.24 -2.00 16 9 C -0.23 -2.81 10.87 22.07 0.24 -2.57 16 10 C 0.01 0.12 12.08 67.10 0.81 0.93 16 11 O -0.17 -3.20 10.40 -5.00 -0.05 -3.25 16 12 C 0.52 13.75 6.92 87.66 0.61 14.36 16 13 O -0.57 -18.04 15.40 -3.03 -0.05 -18.09 16 14 N -0.60 -15.45 2.98 -819.75 -2.44 -17.89 16 15 C 0.10 2.47 5.65 86.22 0.49 2.96 16 16 C -0.12 -3.83 5.17 30.53 0.16 -3.67 16 17 C -0.07 -2.72 2.10 -10.76 -0.02 -2.75 16 18 C 0.03 1.63 4.45 29.85 0.13 1.76 16 19 C -0.53 -28.41 8.39 25.60 0.21 -28.20 16 20 H 0.07 3.47 7.06 -2.91 -0.02 3.45 16 21 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 22 N -0.94 -57.09 13.29 21.45 0.28 -56.80 16 23 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 C -0.12 -3.99 5.36 30.67 0.16 -3.82 16 28 C 0.12 3.21 6.42 86.36 0.55 3.76 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.35 7.15 -2.39 -0.02 1.33 16 32 H 0.42 9.69 7.51 -92.71 -0.70 8.99 16 33 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.25 0.14 8.06 -2.91 -0.02 0.11 16 36 H 0.10 2.02 5.06 -2.39 -0.01 2.01 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.08 2.74 6.91 -2.39 -0.02 2.72 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 41 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 43 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.08 2.33 7.03 -2.39 -0.02 2.32 16 Total: -1.00 -73.84 384.87 3.36 -70.47 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.29 Total: 20.27 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.64 Total: -4.13 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -4.43 Total: -93.71 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.17 Total: -38.38 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -73.84 3.36 -70.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575001286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.092 kcal (2) G-P(sol) polarization free energy of solvation -73.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds