Wall clock time and date at job start Tue Mar 31 2020 18:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99974 * 2 1 4 4 C 1.53001 * 109.47172 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47063 * 305.00484 * 4 3 2 6 6 C 1.53000 * 109.47160 * 64.99849 * 4 3 2 7 7 C 1.52997 * 109.47552 * 184.99993 * 4 3 2 8 8 S 1.81403 * 109.47295 * 174.99897 * 7 4 3 9 9 O 1.42101 * 110.54077 * 291.62409 * 8 7 4 10 10 O 1.42091 * 110.54075 * 68.37680 * 8 7 4 11 11 N 1.65602 * 104.44538 * 180.02562 * 8 7 4 12 12 C 1.46494 * 120.00163 * 65.00550 * 11 8 7 13 13 C 1.52994 * 109.47400 * 164.99857 * 12 11 8 14 14 C 1.53040 * 109.45869 * 295.02342 * 13 12 11 15 15 C 1.53195 * 109.31681 * 178.59987 * 14 13 12 16 16 N 1.46932 * 108.76342 * 54.65222 * 15 14 13 17 17 C 1.36937 * 120.62603 * 126.40752 * 16 15 14 18 18 H 1.07995 * 120.00133 * 331.82542 * 17 16 15 19 19 C 1.38816 * 119.99865 * 151.82710 * 17 16 15 20 20 N 1.31618 * 119.99663 * 343.07171 * 19 17 16 21 21 Si 1.86798 * 120.00189 * 163.07300 * 19 17 16 22 22 H 1.48498 * 109.47095 * 89.99646 * 21 19 17 23 23 H 1.48497 * 109.47066 * 210.00217 * 21 19 17 24 24 H 1.48505 * 109.47070 * 330.00151 * 21 19 17 25 25 C 1.46922 * 118.74177 * 306.38948 * 16 15 14 26 26 C 1.53043 * 109.46362 * 174.96905 * 13 12 11 27 27 H 1.08996 * 109.47141 * 300.00226 * 1 2 3 28 28 H 1.09001 * 109.46827 * 60.00130 * 1 2 3 29 29 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47250 * 60.00098 * 3 2 1 31 31 H 1.08997 * 109.47208 * 299.99568 * 3 2 1 32 32 H 1.09003 * 109.47124 * 180.02562 * 6 4 3 33 33 H 1.08993 * 109.47199 * 60.00270 * 6 4 3 34 34 H 1.09005 * 109.47007 * 300.00320 * 6 4 3 35 35 H 1.08995 * 109.47267 * 295.00281 * 7 4 3 36 36 H 1.09004 * 109.46616 * 55.00102 * 7 4 3 37 37 H 0.96998 * 119.99843 * 244.99320 * 11 8 7 38 38 H 1.09008 * 109.47135 * 284.99618 * 12 11 8 39 39 H 1.08996 * 109.47767 * 44.99488 * 12 11 8 40 40 H 1.08997 * 109.46399 * 54.99421 * 13 12 11 41 41 H 1.09000 * 109.50002 * 298.56368 * 14 13 12 42 42 H 1.09004 * 109.50103 * 58.66239 * 14 13 12 43 43 H 1.09007 * 109.59729 * 294.87175 * 15 14 13 44 44 H 1.09001 * 109.70505 * 174.50486 * 15 14 13 45 45 H 0.97003 * 119.99528 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.58335 * 293.81834 * 25 16 15 47 47 H 1.08994 * 109.70527 * 173.46495 * 25 16 15 48 48 H 1.08996 * 109.49829 * 301.33481 * 26 13 12 49 49 H 1.08997 * 109.49488 * 61.43729 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8508 0.5684 0.8427 6 6 3.9963 0.5364 -1.3064 7 6 4.1574 2.5769 0.1264 8 16 5.9587 2.4233 0.2758 9 8 6.3070 1.8300 1.5192 10 8 6.5220 1.9563 -0.9422 11 7 6.4972 3.9841 0.4036 12 6 6.1306 4.7923 1.5692 13 6 7.0324 6.0264 1.6381 14 6 8.4776 5.5885 1.8866 15 6 9.3827 6.8240 1.9202 16 7 8.8583 7.7671 2.9173 17 6 9.6646 8.2487 3.9139 18 1 10.4946 7.6568 4.2703 19 6 9.4150 9.4976 4.4660 20 7 8.6394 10.3531 3.8346 21 14 10.1799 9.9639 6.1052 22 1 11.4984 10.6058 5.8714 23 1 9.2862 10.9131 6.8162 24 1 10.3631 8.7434 6.9310 25 6 7.4525 8.1841 2.8246 26 6 6.5691 6.9333 2.7805 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 5.0829 0.4499 -1.3057 33 1 3.6810 1.1525 -2.1484 34 1 3.5532 -0.4555 -1.3959 35 1 3.9150 3.1644 -0.7591 36 1 3.7603 3.0735 1.0118 37 1 7.0554 4.3631 -0.2932 38 1 5.0906 5.1068 1.4807 39 1 6.2552 4.2002 2.4757 40 1 6.9750 6.5712 0.6958 41 1 8.5403 5.0653 2.8408 42 1 8.7994 4.9237 1.0849 43 1 9.3915 7.2976 0.9384 44 1 10.3962 6.5298 2.1930 45 1 8.4646 11.2257 4.2206 46 1 7.3039 8.7686 1.9166 47 1 7.1898 8.7866 3.6940 48 1 5.5322 7.2259 2.6151 49 1 6.6500 6.3974 3.7261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582328477.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:10 Heat of formation + Delta-G solvation = -114.397906 kcal Electronic energy + Delta-G solvation = -27542.367688 eV Core-core repulsion = 23631.823151 eV Total energy + Delta-G solvation = -3910.544537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -38.72908 -38.18431 -37.22994 -36.14945 -35.60759 -35.29014 -32.69121 -30.65643 -29.64253 -28.33198 -27.69578 -26.52501 -25.77866 -23.91093 -22.15727 -21.25796 -21.10365 -19.60690 -19.03082 -17.84076 -17.29045 -16.69641 -16.60001 -16.26583 -16.07862 -15.43451 -15.22014 -14.78846 -14.57968 -14.32532 -13.91672 -13.71833 -13.50192 -13.29724 -13.17712 -12.86264 -12.78673 -12.41654 -12.38366 -12.15921 -12.10369 -12.05099 -11.88248 -11.70256 -11.54362 -11.38598 -11.33898 -10.98869 -10.76390 -10.69538 -10.51218 -10.23530 -10.22067 -10.13263 -9.88943 -9.67098 -9.45820 -9.35743 -8.46313 -6.65450 -5.78598 -3.20324 0.06526 2.58371 3.20096 3.37757 3.44783 3.47822 3.65433 3.92545 4.15236 4.33132 4.46316 4.50692 4.75351 4.84469 4.87573 4.91171 4.93712 5.07956 5.13286 5.16992 5.22913 5.27557 5.33334 5.39800 5.45504 5.52213 5.63642 5.66755 5.81969 5.88683 5.94246 6.06741 6.18482 6.33389 6.52592 6.58899 6.66941 6.67702 6.77108 6.84322 6.90134 7.02403 7.36263 7.64975 7.80693 8.46259 9.22623 9.86185 10.42955 11.30033 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024166 B = 0.002215 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.391860 B =12636.019741 C =13232.073057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.073 3.927 4 C -0.078 4.078 5 H 0.094 0.906 6 C -0.176 4.176 7 C -0.632 4.632 8 S 2.616 3.384 9 O -0.952 6.952 10 O -0.956 6.956 11 N -1.115 6.115 12 C 0.115 3.885 13 C -0.083 4.083 14 C -0.129 4.129 15 C 0.144 3.856 16 N -0.593 5.593 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.172 3.828 26 C -0.136 4.136 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.419 0.581 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.016 0.984 44 H 0.053 0.947 45 H 0.253 0.747 46 H 0.017 0.983 47 H 0.087 0.913 48 H 0.050 0.950 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.208 -16.810 -10.090 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.005 4.005 4 C -0.097 4.097 5 H 0.112 0.888 6 C -0.234 4.234 7 C -0.760 4.760 8 S 2.707 3.293 9 O -0.941 6.941 10 O -0.947 6.947 11 N -0.875 5.875 12 C -0.010 4.010 13 C -0.103 4.103 14 C -0.168 4.168 15 C 0.018 3.982 16 N -0.315 5.315 17 C -0.380 4.380 18 H 0.082 0.918 19 C -0.198 4.198 20 N -0.549 5.549 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.046 3.954 26 C -0.176 4.176 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.254 0.746 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.106 0.894 48 H 0.068 0.932 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.709 -17.644 -9.870 25.603 hybrid contribution -0.373 1.315 0.494 1.454 sum -16.082 -16.329 -9.376 24.762 Atomic orbital electron populations 1.22759 0.80742 1.02943 1.00093 1.87865 1.19861 1.27703 1.95445 1.22511 0.92318 0.84864 1.00767 1.20767 0.95178 0.92703 1.01095 0.88789 1.22249 1.03010 1.02306 0.95799 1.30722 1.27981 1.05306 1.12013 1.04821 0.76875 0.73155 0.74428 1.93621 1.80806 1.75236 1.44479 1.93590 1.75445 1.78784 1.46847 1.55511 1.66195 1.33695 1.32118 1.21580 0.98431 0.93866 0.87168 1.21238 0.95095 0.93835 1.00115 1.22069 0.94866 0.98970 1.00889 1.20914 0.95459 0.89516 0.92329 1.44053 1.06631 1.51032 1.29827 1.19183 1.10580 0.97773 1.10421 0.91762 1.25041 1.00018 0.95153 0.99572 1.70031 1.41242 1.06331 1.37303 0.86311 0.78520 0.77974 0.84069 1.21438 1.21595 1.20483 1.20748 0.82388 0.91201 1.01100 1.22230 0.99000 0.99317 0.97041 0.93930 0.94007 0.89451 0.92760 0.92715 0.90600 0.91636 0.90488 0.84552 0.84717 0.74609 0.92265 0.90307 0.91160 0.92051 0.93063 0.96624 0.92853 0.93701 0.96507 0.89438 0.93158 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.39 10.24 -35.23 -0.36 -3.75 16 3 C 0.07 0.54 5.32 37.16 0.20 0.73 16 4 C -0.08 -0.63 2.62 -90.62 -0.24 -0.87 16 5 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 6 C -0.18 -1.51 8.78 37.16 0.33 -1.18 16 7 C -0.63 -4.47 5.51 37.16 0.20 -4.26 16 8 S 2.62 27.76 5.11 -107.50 -0.55 27.21 16 9 O -0.95 -13.68 17.49 -57.54 -1.01 -14.69 16 10 O -0.96 -12.31 15.83 -57.54 -0.91 -13.22 16 11 N -1.11 -11.59 5.40 -10.62 -0.06 -11.65 16 12 C 0.12 1.34 5.52 -4.05 -0.02 1.32 16 13 C -0.08 -1.23 2.18 -90.58 -0.20 -1.43 16 14 C -0.13 -2.17 5.26 -26.61 -0.14 -2.31 16 15 C 0.14 2.98 6.52 -3.71 -0.02 2.96 16 16 N -0.59 -14.62 2.99 -172.31 -0.52 -15.13 16 17 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16 18 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 19 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 20 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 21 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 26 C -0.14 -2.36 5.36 -26.61 -0.14 -2.51 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.74 5.61 -51.93 -0.29 0.44 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.64 7.82 -51.93 -0.41 0.23 16 35 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.13 0.73 8.14 -51.92 -0.42 0.30 16 37 H 0.42 4.02 8.33 -34.47 -0.29 3.74 16 38 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 39 H 0.08 0.98 7.69 -51.93 -0.40 0.58 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.76 7.50 -51.93 -0.39 0.37 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 2.26 6.07 -51.93 -0.31 1.95 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 394.46 15.07 5.94 5.94 Total: -1.00 -34.25 394.46 -9.85 -44.10 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.81 Total: -0.64 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 0.83 Total: -9.41 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.05 Total: -52.14 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -2.28 Total: -31.65 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Atomic # 16 Polarization: 27.76 SS G_CDS: -0.55 Total: 27.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.25 -9.85 -44.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582328477.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.301 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds