Wall clock time and date at job start Tue Mar 31 2020 18:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99974 * 2 1 4 4 C 1.53001 * 109.47172 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47063 * 305.00484 * 4 3 2 6 6 C 1.53000 * 109.47160 * 64.99849 * 4 3 2 7 7 C 1.52997 * 109.47552 * 184.99993 * 4 3 2 8 8 S 1.81403 * 109.47295 * 174.99897 * 7 4 3 9 9 O 1.42101 * 110.54077 * 291.62409 * 8 7 4 10 10 O 1.42091 * 110.54075 * 68.37680 * 8 7 4 11 11 N 1.65602 * 104.44538 * 180.02562 * 8 7 4 12 12 C 1.46494 * 120.00163 * 65.00550 * 11 8 7 13 13 C 1.52994 * 109.47400 * 164.99857 * 12 11 8 14 14 C 1.53040 * 109.45869 * 295.02342 * 13 12 11 15 15 C 1.53195 * 109.31681 * 178.59987 * 14 13 12 16 16 N 1.46932 * 108.76342 * 54.65222 * 15 14 13 17 17 C 1.36937 * 120.62603 * 126.40752 * 16 15 14 18 18 H 1.07995 * 120.00133 * 331.82542 * 17 16 15 19 19 C 1.38816 * 119.99865 * 151.82710 * 17 16 15 20 20 N 1.31618 * 119.99663 * 343.07171 * 19 17 16 21 21 Si 1.86798 * 120.00189 * 163.07300 * 19 17 16 22 22 H 1.48498 * 109.47095 * 89.99646 * 21 19 17 23 23 H 1.48497 * 109.47066 * 210.00217 * 21 19 17 24 24 H 1.48505 * 109.47070 * 330.00151 * 21 19 17 25 25 C 1.46922 * 118.74177 * 306.38948 * 16 15 14 26 26 C 1.53043 * 109.46362 * 174.96905 * 13 12 11 27 27 H 1.08996 * 109.47141 * 300.00226 * 1 2 3 28 28 H 1.09001 * 109.46827 * 60.00130 * 1 2 3 29 29 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47250 * 60.00098 * 3 2 1 31 31 H 1.08997 * 109.47208 * 299.99568 * 3 2 1 32 32 H 1.09003 * 109.47124 * 180.02562 * 6 4 3 33 33 H 1.08993 * 109.47199 * 60.00270 * 6 4 3 34 34 H 1.09005 * 109.47007 * 300.00320 * 6 4 3 35 35 H 1.08995 * 109.47267 * 295.00281 * 7 4 3 36 36 H 1.09004 * 109.46616 * 55.00102 * 7 4 3 37 37 H 0.96998 * 119.99843 * 244.99320 * 11 8 7 38 38 H 1.09008 * 109.47135 * 284.99618 * 12 11 8 39 39 H 1.08996 * 109.47767 * 44.99488 * 12 11 8 40 40 H 1.08997 * 109.46399 * 54.99421 * 13 12 11 41 41 H 1.09000 * 109.50002 * 298.56368 * 14 13 12 42 42 H 1.09004 * 109.50103 * 58.66239 * 14 13 12 43 43 H 1.09007 * 109.59729 * 294.87175 * 15 14 13 44 44 H 1.09001 * 109.70505 * 174.50486 * 15 14 13 45 45 H 0.97003 * 119.99528 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.58335 * 293.81834 * 25 16 15 47 47 H 1.08994 * 109.70527 * 173.46495 * 25 16 15 48 48 H 1.08996 * 109.49829 * 301.33481 * 26 13 12 49 49 H 1.08997 * 109.49488 * 61.43729 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8508 0.5684 0.8427 6 6 3.9963 0.5364 -1.3064 7 6 4.1574 2.5769 0.1264 8 16 5.9587 2.4233 0.2758 9 8 6.3070 1.8300 1.5192 10 8 6.5220 1.9563 -0.9422 11 7 6.4972 3.9841 0.4036 12 6 6.1306 4.7923 1.5692 13 6 7.0324 6.0264 1.6381 14 6 8.4776 5.5885 1.8866 15 6 9.3827 6.8240 1.9202 16 7 8.8583 7.7671 2.9173 17 6 9.6646 8.2487 3.9139 18 1 10.4946 7.6568 4.2703 19 6 9.4150 9.4976 4.4660 20 7 8.6394 10.3531 3.8346 21 14 10.1799 9.9639 6.1052 22 1 11.4984 10.6058 5.8714 23 1 9.2862 10.9131 6.8162 24 1 10.3631 8.7434 6.9310 25 6 7.4525 8.1841 2.8246 26 6 6.5691 6.9333 2.7805 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 5.0829 0.4499 -1.3057 33 1 3.6810 1.1525 -2.1484 34 1 3.5532 -0.4555 -1.3959 35 1 3.9150 3.1644 -0.7591 36 1 3.7603 3.0735 1.0118 37 1 7.0554 4.3631 -0.2932 38 1 5.0906 5.1068 1.4807 39 1 6.2552 4.2002 2.4757 40 1 6.9750 6.5712 0.6958 41 1 8.5403 5.0653 2.8408 42 1 8.7994 4.9237 1.0849 43 1 9.3915 7.2976 0.9384 44 1 10.3962 6.5298 2.1930 45 1 8.4646 11.2257 4.2206 46 1 7.3039 8.7686 1.9166 47 1 7.1898 8.7866 3.6940 48 1 5.5322 7.2259 2.6151 49 1 6.6500 6.3974 3.7261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582328477.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:10 Heat of formation + Delta-G solvation = -139.515403 kcal Electronic energy + Delta-G solvation = -27543.456865 eV Core-core repulsion = 23631.823151 eV Total energy + Delta-G solvation = -3911.633714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.59478 -39.25542 -38.15977 -37.04881 -36.63352 -36.20341 -34.32363 -32.30591 -31.29513 -28.86701 -28.26979 -28.03241 -26.26933 -25.53454 -23.72774 -22.66156 -21.80122 -20.80660 -20.15828 -18.88036 -18.39855 -17.96828 -17.32208 -16.93201 -16.78681 -16.74660 -16.04369 -15.91426 -15.66366 -15.48656 -15.27515 -15.11933 -14.78266 -14.44521 -14.10200 -13.88646 -13.84107 -13.54369 -13.30379 -13.20586 -13.16311 -13.06136 -12.97845 -12.75129 -12.58225 -12.53354 -12.43243 -12.26346 -12.10095 -11.97590 -11.96270 -11.80210 -11.55544 -11.39419 -11.11325 -11.07696 -10.61120 -10.51721 -10.27976 -8.64259 -7.86411 -5.30853 -0.71922 1.46063 1.47556 1.57464 1.79000 2.52020 2.64631 2.97146 3.25308 3.27849 3.56520 3.68609 3.74649 3.86405 3.93799 4.01997 4.10763 4.24537 4.33619 4.45896 4.50428 4.54824 4.58193 4.60712 4.64523 4.66121 4.73278 4.76245 4.81639 4.87287 4.88239 4.94447 5.00246 5.08400 5.11222 5.27790 5.30717 5.35821 5.37442 5.46983 5.58351 5.69002 5.84994 6.13049 6.22018 6.41551 7.17804 7.90113 8.40398 9.19383 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024166 B = 0.002215 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.391860 B =12636.019741 C =13232.073057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.071 3.929 4 C -0.085 4.085 5 H 0.083 0.917 6 C -0.180 4.180 7 C -0.608 4.608 8 S 2.618 3.382 9 O -0.997 6.997 10 O -0.985 6.985 11 N -1.113 6.113 12 C 0.120 3.880 13 C -0.077 4.077 14 C -0.120 4.120 15 C 0.139 3.861 16 N -0.612 5.612 17 C -0.263 4.263 18 H 0.060 0.940 19 C -0.051 4.051 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.273 1.273 25 C 0.174 3.826 26 C -0.124 4.124 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.423 0.577 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.016 0.984 44 H 0.044 0.956 45 H 0.250 0.750 46 H -0.002 1.002 47 H 0.051 0.949 48 H 0.083 0.917 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.423 -17.422 -10.694 27.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.007 4.007 4 C -0.105 4.105 5 H 0.101 0.899 6 C -0.237 4.237 7 C -0.740 4.740 8 S 2.715 3.285 9 O -0.987 6.987 10 O -0.975 6.975 11 N -0.874 5.874 12 C -0.006 4.006 13 C -0.098 4.098 14 C -0.159 4.159 15 C 0.013 3.987 16 N -0.336 5.336 17 C -0.393 4.393 18 H 0.078 0.922 19 C -0.246 4.246 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.198 1.198 25 C 0.048 3.952 26 C -0.164 4.164 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.185 0.815 36 H 0.180 0.820 37 H 0.259 0.741 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.034 0.966 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.016 0.984 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.874 -18.284 -10.485 27.636 hybrid contribution 0.299 1.472 0.613 1.623 sum -17.575 -16.812 -9.872 26.248 Atomic orbital electron populations 1.22920 0.79404 1.03774 1.00985 1.87828 1.21434 1.28683 1.95660 1.22586 0.91228 0.84703 1.02163 1.20835 0.96314 0.93044 1.00343 0.89854 1.22277 1.01931 1.02712 0.96818 1.30487 1.23029 1.05534 1.14939 1.04501 0.78527 0.72600 0.72921 1.93567 1.82720 1.76245 1.46198 1.93554 1.77310 1.79232 1.47453 1.55334 1.67004 1.33170 1.31889 1.21500 0.99665 0.92047 0.87359 1.21142 0.94217 0.95084 0.99309 1.21950 0.95761 0.97106 1.01123 1.21066 0.96045 0.90324 0.91228 1.44344 1.07365 1.51577 1.30344 1.19468 1.10734 0.97858 1.11242 0.92234 1.25756 1.01037 0.95212 1.02595 1.70173 1.42699 1.06468 1.38578 0.85324 0.77525 0.77595 0.80283 1.21278 1.21583 1.19841 1.20628 0.82747 0.93313 0.98481 1.22026 0.99490 0.96920 0.97925 0.93142 0.92949 0.88825 0.91454 0.91146 0.92199 0.90251 0.90819 0.81470 0.81978 0.74114 0.88161 0.91134 0.90225 0.93368 0.90723 0.96610 0.93732 0.94094 0.98357 0.93019 0.89896 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.42 -6.38 10.24 -148.98 -1.53 -7.91 16 3 C 0.07 0.81 5.32 71.98 0.38 1.19 16 4 C -0.09 -1.18 2.62 -10.79 -0.03 -1.21 16 5 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 6 C -0.18 -2.80 8.78 71.98 0.63 -2.17 16 7 C -0.61 -6.21 5.51 71.98 0.40 -5.81 16 8 S 2.62 50.57 5.11 -56.49 -0.29 50.28 16 9 O -1.00 -27.88 17.49 -127.65 -2.23 -30.12 16 10 O -0.99 -24.34 15.83 -127.65 -2.02 -26.36 16 11 N -1.11 -19.93 5.40 -187.50 -1.01 -20.94 16 12 C 0.12 2.35 5.52 86.38 0.48 2.83 16 13 C -0.08 -2.12 2.18 -10.77 -0.02 -2.14 16 14 C -0.12 -3.92 5.26 30.67 0.16 -3.76 16 15 C 0.14 5.76 6.52 86.36 0.56 6.32 16 16 N -0.61 -30.72 2.99 -699.08 -2.09 -32.82 16 17 C -0.26 -14.66 9.58 84.03 0.81 -13.85 16 18 H 0.06 3.29 7.88 -2.91 -0.02 3.27 16 19 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 20 N -0.93 -54.91 11.19 21.65 0.24 -54.66 16 21 Si 0.96 45.17 29.59 68.60 2.03 47.20 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 C 0.17 8.05 5.30 86.36 0.46 8.51 16 26 C -0.12 -4.10 5.36 30.67 0.16 -3.93 16 27 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 1.13 5.61 -2.39 -0.01 1.11 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.16 7.82 -2.38 -0.02 1.14 16 35 H 0.17 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.16 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.42 6.97 8.33 -96.75 -0.81 6.17 16 38 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.07 1.55 7.69 -2.39 -0.02 1.53 16 40 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 2.07 7.50 -2.38 -0.02 2.06 16 43 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.04 1.87 7.93 -2.39 -0.02 1.85 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 46 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 47 H 0.05 2.75 6.07 -2.39 -0.01 2.73 16 48 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -77.02 394.46 -1.14 -78.15 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.11 Total: 12.14 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 5.65 Total: -14.97 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -2.86 Total: -108.42 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: -5.78 Total: -64.39 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 50.57 SS G_CDS: -0.29 Total: 50.28 kcal Total: -77.02 -1.14 -78.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582328477.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.363 kcal (2) G-P(sol) polarization free energy of solvation -77.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds