Wall clock time and date at job start Tue Mar 31 2020 18:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47093 * 2 1 4 4 C 1.53001 * 109.47056 * 119.99064 * 2 1 3 5 5 O 1.42905 * 109.46962 * 55.00607 * 4 2 1 6 6 C 1.42901 * 114.00039 * 179.97438 * 5 4 2 7 7 H 1.08992 * 110.75005 * 32.01607 * 6 5 4 8 8 C 1.55310 * 110.84722 * 155.71345 * 6 5 4 9 9 C 1.54945 * 100.94039 * 152.32030 * 8 6 5 10 10 O 1.43641 * 105.13785 * 323.55298 * 9 8 6 11 11 C 1.43240 * 109.97187 * 24.43236 * 10 9 8 12 12 N 1.46496 * 109.47574 * 239.99512 * 2 1 3 13 13 C 1.34781 * 119.99983 * 84.99403 * 12 2 1 14 14 O 1.21585 * 119.99977 * 0.02562 * 13 12 2 15 15 N 1.34772 * 119.99913 * 179.97438 * 13 12 2 16 16 C 1.39953 * 120.00037 * 175.48710 * 15 13 12 17 17 C 1.39285 * 119.94764 * 35.85378 * 16 15 13 18 18 C 1.38491 * 120.43296 * 180.25641 * 17 16 15 19 19 C 1.37688 * 120.31685 * 359.75087 * 18 17 16 20 20 C 1.40741 * 119.88595 * 359.97438 * 19 18 17 21 21 C 1.41410 * 120.21200 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99848 * 24.63814 * 21 20 19 23 23 C 1.39932 * 119.99769 * 204.63774 * 21 20 19 24 24 N 1.30822 * 120.00368 * 15.37315 * 23 21 20 25 25 Si 1.86804 * 119.99562 * 195.38034 * 23 21 20 26 26 H 1.48494 * 109.47319 * 59.99585 * 25 23 21 27 27 H 1.48502 * 109.46888 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46847 * 299.99705 * 25 23 21 29 29 C 1.38234 * 119.94747 * 215.60854 * 16 15 13 30 30 H 1.09003 * 109.47174 * 300.00459 * 1 2 3 31 31 H 1.09000 * 109.46956 * 60.00409 * 1 2 3 32 32 H 1.08999 * 109.46870 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47311 * 175.00102 * 4 2 1 34 34 H 1.08998 * 109.47417 * 295.00524 * 4 2 1 35 35 H 1.08997 * 111.12473 * 270.24314 * 8 6 5 36 36 H 1.08999 * 111.12124 * 34.40234 * 8 6 5 37 37 H 1.08998 * 110.30699 * 204.63440 * 9 8 6 38 38 H 1.09001 * 110.30906 * 82.46965 * 9 8 6 39 39 H 1.09001 * 109.82969 * 238.77477 * 11 10 9 40 40 H 1.08998 * 109.83414 * 117.80103 * 11 10 9 41 41 H 0.97005 * 119.99937 * 265.00541 * 12 2 1 42 42 H 0.97006 * 119.99981 * 355.49607 * 15 13 12 43 43 H 1.08007 * 119.78513 * 359.97438 * 17 16 15 44 44 H 1.07995 * 119.84446 * 179.77248 * 18 17 16 45 45 H 1.08002 * 120.05604 * 179.97438 * 19 18 17 46 46 H 0.97005 * 120.00145 * 179.97438 * 24 23 21 47 47 H 1.08000 * 120.16403 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 8 1.4703 -2.0302 1.3097 6 6 1.8845 -2.7927 2.4451 7 1 2.0679 -2.1428 3.3006 8 6 0.8357 -3.8850 2.7898 9 6 1.7344 -4.9546 3.4600 10 8 2.9709 -4.9164 2.7299 11 6 3.1367 -3.6333 2.1152 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3571 14 8 1.8582 1.1614 -2.4117 15 7 2.5969 -0.6537 -3.4573 16 6 2.6413 0.0181 -4.6843 17 6 2.9614 1.3730 -4.7240 18 6 3.0030 2.0489 -5.9320 19 6 2.7331 1.3867 -7.1086 20 6 2.4138 0.0162 -7.0846 21 6 2.1348 -0.6707 -8.2888 22 1 2.5317 -0.3041 -9.2239 23 6 1.3445 -1.8253 -8.2688 24 7 0.6216 -2.1050 -7.2149 25 14 1.3220 -2.9674 -9.7468 26 1 2.6939 -3.4759 -10.0005 27 1 0.4132 -4.1101 -9.4755 28 1 0.8412 -2.2242 -10.9392 29 6 2.3723 -0.6654 -5.8553 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1263 -0.7993 1.2058 34 1 1.7516 -0.1581 2.1370 35 1 0.0888 -3.5062 3.4876 36 1 0.3652 -4.2764 1.8879 37 1 1.2761 -5.9400 3.3767 38 1 1.9052 -4.7032 4.5068 39 1 3.2298 -3.7498 1.0354 40 1 4.0257 -3.1444 2.5136 41 1 2.2491 -1.6319 -1.1524 42 1 2.8898 -1.5766 -3.3988 43 1 3.1741 1.9012 -3.8062 44 1 3.2487 3.1004 -5.9514 45 1 2.7663 1.9180 -8.0483 46 1 0.0735 -2.9052 -7.2012 47 1 2.1275 -1.7169 -5.8260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590854970.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:53 Heat of formation + Delta-G solvation = -98.605418 kcal Electronic energy + Delta-G solvation = -28329.542409 eV Core-core repulsion = 24284.238734 eV Total energy + Delta-G solvation = -4045.303675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.21141 -39.80236 -38.06770 -37.19776 -35.17931 -34.07439 -33.25101 -31.85268 -30.73723 -29.43251 -29.11521 -27.90442 -26.67782 -25.16832 -22.99716 -22.30770 -21.96633 -21.11647 -20.57623 -19.89414 -18.13353 -17.78930 -17.34206 -16.99310 -16.41671 -15.73011 -15.50247 -15.33309 -14.92760 -14.78146 -14.57398 -14.37203 -14.19370 -13.76870 -13.55596 -13.32628 -12.99101 -12.76402 -12.61683 -12.48575 -12.25099 -12.01641 -11.96216 -11.65464 -11.63083 -11.19162 -11.14290 -11.05443 -11.01779 -10.72675 -10.42053 -10.05025 -10.01085 -9.91663 -9.81936 -9.45207 -9.22127 -8.86480 -8.83460 -7.29996 -6.87543 -6.64744 -4.31682 2.79141 2.93935 2.97623 3.08976 3.12126 3.13724 3.29796 3.53562 3.78340 3.96620 3.97155 4.39191 4.43923 4.56517 4.65857 4.70187 4.71237 4.83355 4.87534 5.00160 5.20237 5.25363 5.27319 5.35447 5.45823 5.46927 5.57122 5.71212 5.75627 5.99139 6.32256 6.34826 6.51330 6.63908 6.74313 6.78057 6.81661 6.90999 7.07225 7.12777 7.30246 7.46546 7.71377 7.92143 8.06052 8.11107 8.34017 8.53810 8.67522 8.95317 8.98903 9.14417 10.25811 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.002490 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.872464 B =11244.419097 C =12713.152270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.169 3.831 3 H 0.100 0.900 4 C 0.051 3.949 5 O -0.363 6.363 6 C 0.056 3.944 7 H 0.079 0.921 8 C -0.153 4.153 9 C 0.051 3.949 10 O -0.379 6.379 11 C 0.027 3.973 12 N -0.744 5.744 13 C 0.702 3.298 14 O -0.576 6.576 15 N -0.678 5.678 16 C 0.160 3.840 17 C -0.225 4.225 18 C -0.089 4.089 19 C -0.229 4.229 20 C 0.119 3.881 21 C -0.464 4.464 22 H 0.077 0.923 23 C 0.075 3.925 24 N -0.799 5.799 25 Si 0.908 3.092 26 H -0.265 1.265 27 H -0.280 1.280 28 H -0.266 1.266 29 C -0.184 4.184 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.396 0.604 42 H 0.396 0.604 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.278 0.722 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.198 -5.170 21.516 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.063 3.937 3 H 0.118 0.882 4 C -0.026 4.026 5 O -0.282 6.282 6 C -0.002 4.002 7 H 0.097 0.903 8 C -0.190 4.190 9 C -0.025 4.025 10 O -0.299 6.299 11 C -0.050 4.050 12 N -0.401 5.401 13 C 0.402 3.598 14 O -0.453 6.453 15 N -0.323 5.323 16 C 0.068 3.932 17 C -0.246 4.246 18 C -0.108 4.108 19 C -0.249 4.249 20 C 0.116 3.884 21 C -0.494 4.494 22 H 0.095 0.905 23 C -0.142 4.142 24 N -0.425 5.425 25 Si 0.733 3.267 26 H -0.189 1.189 27 H -0.205 1.205 28 H -0.191 1.191 29 C -0.206 4.206 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.230 0.770 42 H 0.229 0.771 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.748 -4.486 21.431 21.908 hybrid contribution 0.044 -1.181 -0.342 1.230 sum 0.792 -5.667 21.089 21.851 Atomic orbital electron populations 1.22109 0.94842 1.02734 1.02247 1.20776 0.94931 0.96308 0.81694 0.88171 1.22996 0.97653 0.83711 0.98246 1.87993 1.69451 1.26444 1.44334 1.23665 0.93974 0.93306 0.89271 0.90349 1.23314 0.98080 0.95141 1.02490 1.23353 0.83972 0.99854 0.95369 1.88450 1.39928 1.32765 1.68733 1.23691 0.97757 0.84132 0.99429 1.45137 1.72480 1.13655 1.08854 1.15959 0.78371 0.85273 0.80178 1.90904 1.56488 1.14002 1.83883 1.42547 1.66953 1.15678 1.07142 1.17430 1.00793 0.92304 0.82663 1.20467 1.13048 0.93908 0.97173 1.20436 1.00226 0.97363 0.92791 1.21024 1.12967 0.94780 0.96130 1.17350 0.88226 0.90322 0.92544 1.19490 1.27882 1.07527 0.94479 0.90498 1.25881 0.93370 0.97693 0.97229 1.69818 1.19343 1.24007 1.29303 0.86380 0.79023 0.79489 0.81846 1.18940 1.20471 1.19089 1.21120 1.08409 1.00551 0.90549 0.92257 0.91680 0.91700 0.92351 0.91537 0.89255 0.88934 0.89168 0.91954 0.89962 0.91184 0.76980 0.77072 0.87503 0.89154 0.88988 0.91070 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.29 37.16 0.35 -1.57 16 2 C 0.17 1.94 2.98 -67.93 -0.20 1.74 16 3 H 0.10 1.26 7.58 -51.93 -0.39 0.87 16 4 C 0.05 0.42 5.55 37.16 0.21 0.62 16 5 O -0.36 -3.21 8.93 -35.23 -0.31 -3.52 16 6 C 0.06 0.40 3.45 -24.78 -0.09 0.32 16 7 H 0.08 0.44 7.89 -51.93 -0.41 0.03 16 8 C -0.15 -0.98 6.89 -24.48 -0.17 -1.15 16 9 C 0.05 0.33 7.78 38.18 0.30 0.63 16 10 O -0.38 -3.68 11.36 -35.23 -0.40 -4.08 16 11 C 0.03 0.22 7.58 37.88 0.29 0.51 16 12 N -0.74 -10.14 5.06 -58.68 -0.30 -10.44 16 13 C 0.70 13.17 8.37 -86.92 -0.73 12.44 16 14 O -0.58 -12.96 13.47 5.29 0.07 -12.89 16 15 N -0.68 -13.22 5.34 -14.27 -0.08 -13.29 16 16 C 0.16 3.85 6.27 -83.76 -0.53 3.33 16 17 C -0.22 -5.50 8.70 -39.10 -0.34 -5.84 16 18 C -0.09 -2.15 10.02 -39.69 -0.40 -2.54 16 19 C -0.23 -5.82 9.79 -38.84 -0.38 -6.20 16 20 C 0.12 3.21 5.58 -106.85 -0.60 2.62 16 21 C -0.46 -12.40 9.07 -37.74 -0.34 -12.74 16 22 H 0.08 1.97 7.89 -52.49 -0.41 1.56 16 23 C 0.07 1.89 5.19 -17.35 -0.09 1.80 16 24 N -0.80 -20.78 10.81 55.55 0.60 -20.18 16 25 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 26 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 27 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 28 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 29 C -0.18 -4.79 8.61 -38.68 -0.33 -5.12 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.78 7.56 -51.93 -0.39 0.39 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.40 4.59 8.40 -40.82 -0.34 4.25 16 42 H 0.40 6.43 8.84 -40.82 -0.36 6.07 16 43 H 0.11 2.60 6.26 -52.48 -0.33 2.28 16 44 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 45 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 46 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 47 H 0.12 3.27 6.07 -52.49 -0.32 2.96 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -32.16 387.17 -9.83 -41.99 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -7.16 Total: 13.98 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -3.05 Total: -11.17 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.23 Total: -43.91 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.64 Total: -20.48 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.16 -9.83 -41.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590854970.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.618 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds