Wall clock time and date at job start Tue Mar 31 2020 18:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47093 * 2 1 4 4 C 1.53001 * 109.47056 * 119.99064 * 2 1 3 5 5 O 1.42905 * 109.46962 * 55.00607 * 4 2 1 6 6 C 1.42901 * 114.00039 * 179.97438 * 5 4 2 7 7 H 1.08992 * 110.75005 * 32.01607 * 6 5 4 8 8 C 1.55310 * 110.84722 * 155.71345 * 6 5 4 9 9 C 1.54945 * 100.94039 * 152.32030 * 8 6 5 10 10 O 1.43641 * 105.13785 * 323.55298 * 9 8 6 11 11 C 1.43240 * 109.97187 * 24.43236 * 10 9 8 12 12 N 1.46496 * 109.47574 * 239.99512 * 2 1 3 13 13 C 1.34781 * 119.99983 * 84.99403 * 12 2 1 14 14 O 1.21585 * 119.99977 * 0.02562 * 13 12 2 15 15 N 1.34772 * 119.99913 * 179.97438 * 13 12 2 16 16 C 1.39953 * 120.00037 * 175.48710 * 15 13 12 17 17 C 1.39285 * 119.94764 * 35.85378 * 16 15 13 18 18 C 1.38491 * 120.43296 * 180.25641 * 17 16 15 19 19 C 1.37688 * 120.31685 * 359.75087 * 18 17 16 20 20 C 1.40741 * 119.88595 * 359.97438 * 19 18 17 21 21 C 1.41410 * 120.21200 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99848 * 24.63814 * 21 20 19 23 23 C 1.39932 * 119.99769 * 204.63774 * 21 20 19 24 24 N 1.30822 * 120.00368 * 15.37315 * 23 21 20 25 25 Si 1.86804 * 119.99562 * 195.38034 * 23 21 20 26 26 H 1.48494 * 109.47319 * 59.99585 * 25 23 21 27 27 H 1.48502 * 109.46888 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46847 * 299.99705 * 25 23 21 29 29 C 1.38234 * 119.94747 * 215.60854 * 16 15 13 30 30 H 1.09003 * 109.47174 * 300.00459 * 1 2 3 31 31 H 1.09000 * 109.46956 * 60.00409 * 1 2 3 32 32 H 1.08999 * 109.46870 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47311 * 175.00102 * 4 2 1 34 34 H 1.08998 * 109.47417 * 295.00524 * 4 2 1 35 35 H 1.08997 * 111.12473 * 270.24314 * 8 6 5 36 36 H 1.08999 * 111.12124 * 34.40234 * 8 6 5 37 37 H 1.08998 * 110.30699 * 204.63440 * 9 8 6 38 38 H 1.09001 * 110.30906 * 82.46965 * 9 8 6 39 39 H 1.09001 * 109.82969 * 238.77477 * 11 10 9 40 40 H 1.08998 * 109.83414 * 117.80103 * 11 10 9 41 41 H 0.97005 * 119.99937 * 265.00541 * 12 2 1 42 42 H 0.97006 * 119.99981 * 355.49607 * 15 13 12 43 43 H 1.08007 * 119.78513 * 359.97438 * 17 16 15 44 44 H 1.07995 * 119.84446 * 179.77248 * 18 17 16 45 45 H 1.08002 * 120.05604 * 179.97438 * 19 18 17 46 46 H 0.97005 * 120.00145 * 179.97438 * 24 23 21 47 47 H 1.08000 * 120.16403 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 8 1.4703 -2.0302 1.3097 6 6 1.8845 -2.7927 2.4451 7 1 2.0679 -2.1428 3.3006 8 6 0.8357 -3.8850 2.7898 9 6 1.7344 -4.9546 3.4600 10 8 2.9709 -4.9164 2.7299 11 6 3.1367 -3.6333 2.1152 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3571 14 8 1.8582 1.1614 -2.4117 15 7 2.5969 -0.6537 -3.4573 16 6 2.6413 0.0181 -4.6843 17 6 2.9614 1.3730 -4.7240 18 6 3.0030 2.0489 -5.9320 19 6 2.7331 1.3867 -7.1086 20 6 2.4138 0.0162 -7.0846 21 6 2.1348 -0.6707 -8.2888 22 1 2.5317 -0.3041 -9.2239 23 6 1.3445 -1.8253 -8.2688 24 7 0.6216 -2.1050 -7.2149 25 14 1.3220 -2.9674 -9.7468 26 1 2.6939 -3.4759 -10.0005 27 1 0.4132 -4.1101 -9.4755 28 1 0.8412 -2.2242 -10.9392 29 6 2.3723 -0.6654 -5.8553 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1263 -0.7993 1.2058 34 1 1.7516 -0.1581 2.1370 35 1 0.0888 -3.5062 3.4876 36 1 0.3652 -4.2764 1.8879 37 1 1.2761 -5.9400 3.3767 38 1 1.9052 -4.7032 4.5068 39 1 3.2298 -3.7498 1.0354 40 1 4.0257 -3.1444 2.5136 41 1 2.2491 -1.6319 -1.1524 42 1 2.8898 -1.5766 -3.3988 43 1 3.1741 1.9012 -3.8062 44 1 3.2487 3.1004 -5.9514 45 1 2.7663 1.9180 -8.0483 46 1 0.0735 -2.9052 -7.2012 47 1 2.1275 -1.7169 -5.8260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590854970.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:51 Heat of formation + Delta-G solvation = -120.040452 kcal Electronic energy + Delta-G solvation = -28330.471902 eV Core-core repulsion = 24284.238734 eV Total energy + Delta-G solvation = -4046.233168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.48665 -40.63479 -39.34388 -38.48684 -36.39121 -35.76792 -35.09000 -32.64218 -31.78390 -31.36323 -29.79312 -29.54699 -27.47258 -27.13372 -23.83674 -23.43602 -23.00999 -22.51872 -21.83682 -21.50456 -19.64012 -19.17641 -18.38446 -17.75905 -17.57438 -17.11737 -16.56447 -16.45668 -16.31484 -16.07476 -15.92893 -15.78655 -15.15803 -14.85764 -14.75707 -14.53214 -14.26595 -14.18374 -14.03987 -13.59273 -13.37429 -13.19504 -12.96986 -12.75400 -12.71842 -12.57397 -12.53608 -12.38441 -12.19907 -11.96582 -11.84240 -11.70185 -11.67225 -11.23523 -11.03151 -10.67004 -10.63258 -10.50476 -10.12730 -9.29036 -8.74231 -8.54376 -6.33885 0.93404 1.08419 1.40648 1.51559 1.55955 1.70650 2.20567 2.23628 2.42344 2.79411 3.00329 3.30030 3.44953 3.74030 3.76507 3.89229 4.00681 4.07652 4.19077 4.29176 4.40347 4.46410 4.47792 4.58547 4.69883 4.74369 4.78329 4.81552 4.83590 4.88235 4.93535 4.97752 5.06817 5.14520 5.19830 5.24419 5.33823 5.38396 5.55807 5.79431 5.84763 5.96671 6.04289 6.12506 6.15332 6.21209 6.41309 6.71138 6.96484 7.00515 7.11797 7.61088 8.36887 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.002490 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.872464 B =11244.419097 C =12713.152270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 H 0.091 0.909 4 C 0.060 3.940 5 O -0.379 6.379 6 C 0.058 3.942 7 H 0.102 0.898 8 C -0.150 4.150 9 C 0.046 3.954 10 O -0.407 6.407 11 C 0.023 3.977 12 N -0.723 5.723 13 C 0.699 3.301 14 O -0.614 6.614 15 N -0.675 5.675 16 C 0.167 3.833 17 C -0.237 4.237 18 C -0.087 4.087 19 C -0.248 4.248 20 C 0.089 3.911 21 C -0.497 4.497 22 H 0.078 0.922 23 C 0.035 3.965 24 N -0.827 5.827 25 Si 0.984 3.016 26 H -0.259 1.259 27 H -0.269 1.269 28 H -0.262 1.262 29 C -0.205 4.205 30 H 0.086 0.914 31 H 0.027 0.973 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.409 0.591 42 H 0.411 0.589 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.101 0.899 46 H 0.286 0.714 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 -5.957 23.118 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.058 3.942 3 H 0.109 0.891 4 C -0.017 4.017 5 O -0.298 6.298 6 C 0.000 4.000 7 H 0.120 0.880 8 C -0.187 4.187 9 C -0.029 4.029 10 O -0.327 6.327 11 C -0.054 4.054 12 N -0.380 5.380 13 C 0.400 3.600 14 O -0.494 6.494 15 N -0.322 5.322 16 C 0.073 3.927 17 C -0.258 4.258 18 C -0.106 4.106 19 C -0.268 4.268 20 C 0.087 3.913 21 C -0.526 4.526 22 H 0.096 0.904 23 C -0.180 4.180 24 N -0.453 5.453 25 Si 0.805 3.195 26 H -0.183 1.183 27 H -0.193 1.193 28 H -0.186 1.186 29 C -0.227 4.227 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.245 0.755 42 H 0.247 0.753 43 H 0.126 0.874 44 H 0.137 0.863 45 H 0.119 0.881 46 H 0.097 0.903 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.696 -5.308 23.095 23.707 hybrid contribution 0.033 -0.924 -0.717 1.170 sum 0.729 -6.232 22.378 23.241 Atomic orbital electron populations 1.22038 0.95049 1.02415 1.01728 1.21006 0.94739 0.96421 0.82079 0.89070 1.22921 0.98041 0.83650 0.97074 1.87970 1.69671 1.26732 1.45451 1.23774 0.93516 0.93428 0.89320 0.87990 1.23313 0.98268 0.94900 1.02269 1.23539 0.83027 1.00392 0.95983 1.88414 1.41361 1.33685 1.69283 1.23747 0.98899 0.84036 0.98696 1.45053 1.70980 1.14100 1.07870 1.16123 0.78021 0.84935 0.80944 1.90871 1.58069 1.15827 1.84638 1.42417 1.67188 1.16309 1.06242 1.17468 0.99082 0.92396 0.83788 1.20637 1.13522 0.94265 0.97400 1.20754 0.98944 0.98753 0.92164 1.21204 1.13902 0.94572 0.97125 1.17774 0.88830 0.91369 0.93370 1.19770 1.29191 1.09139 0.94518 0.90420 1.26753 0.92243 0.98571 1.00395 1.69880 1.19543 1.24632 1.31240 0.85228 0.79325 0.77224 0.77746 1.18328 1.19327 1.18601 1.21064 1.10149 1.00291 0.91171 0.89546 0.95397 0.91818 0.91295 0.88653 0.87324 0.90493 0.88642 0.90195 0.91346 0.90125 0.75536 0.75341 0.87397 0.86307 0.88070 0.90315 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.29 71.98 0.67 -2.84 16 2 C 0.16 3.50 2.98 44.99 0.13 3.64 16 3 H 0.09 2.20 7.58 -2.39 -0.02 2.18 16 4 C 0.06 0.80 5.55 71.98 0.40 1.20 16 5 O -0.38 -5.75 8.93 -148.98 -1.33 -7.09 16 6 C 0.06 0.67 3.45 31.86 0.11 0.78 16 7 H 0.10 0.73 7.89 -2.39 -0.02 0.71 16 8 C -0.15 -1.61 6.89 32.05 0.22 -1.39 16 9 C 0.05 0.52 7.78 72.65 0.56 1.09 16 10 O -0.41 -7.43 11.36 -148.98 -1.69 -9.12 16 11 C 0.02 0.34 7.58 72.45 0.55 0.89 16 12 N -0.72 -19.15 5.06 -457.82 -2.32 -21.47 16 13 C 0.70 26.30 8.37 179.05 1.50 27.79 16 14 O -0.61 -27.97 13.47 -3.98 -0.05 -28.03 16 15 N -0.67 -26.55 5.34 -317.33 -1.69 -28.24 16 16 C 0.17 8.15 6.27 38.09 0.24 8.39 16 17 C -0.24 -11.72 8.70 22.58 0.20 -11.53 16 18 C -0.09 -4.22 10.02 22.20 0.22 -4.00 16 19 C -0.25 -12.83 9.79 22.75 0.22 -12.61 16 20 C 0.09 4.99 5.58 -21.30 -0.12 4.87 16 21 C -0.50 -27.12 9.07 23.46 0.21 -26.91 16 22 H 0.08 4.07 7.89 -2.91 -0.02 4.04 16 23 C 0.03 1.76 5.19 85.25 0.44 2.20 16 24 N -0.83 -43.56 10.81 21.82 0.24 -43.32 16 25 Si 0.98 38.35 29.59 68.60 2.03 40.38 16 26 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 27 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 28 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 29 C -0.20 -10.94 8.61 22.85 0.20 -10.74 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.46 7.56 -2.39 -0.02 1.44 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 0.80 8.11 -2.39 -0.02 0.78 16 35 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 1.15 8.05 -2.39 -0.02 1.14 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.41 8.99 8.40 -92.70 -0.78 8.21 16 42 H 0.41 13.37 8.84 -92.70 -0.82 12.55 16 43 H 0.11 5.30 6.26 -2.91 -0.02 5.28 16 44 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 45 H 0.10 4.89 8.06 -2.91 -0.02 4.86 16 46 H 0.29 13.69 8.30 -92.70 -0.77 12.92 16 47 H 0.12 6.27 6.07 -2.91 -0.02 6.26 16 Total: -1.00 -71.33 387.17 0.34 -70.99 By element: Atomic # 1 Polarization: 45.65 SS G_CDS: -0.60 Total: 45.05 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 5.76 Total: -19.16 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -3.78 Total: -93.03 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -3.08 Total: -44.23 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -71.33 0.34 -70.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590854970.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.045 kcal (2) G-P(sol) polarization free energy of solvation -71.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds