Wall clock time and date at job start Tue Mar 31 2020 17:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47198 * 2 1 4 4 C 1.52997 * 109.47131 * 239.99766 * 2 1 3 5 5 N 1.46495 * 109.46975 * 179.97438 * 4 2 1 6 6 C 1.34775 * 120.00018 * 179.97438 * 5 4 2 7 7 O 1.21592 * 120.00129 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00099 * 180.02562 * 6 5 4 9 9 C 1.47023 * 125.64933 * 0.02576 * 8 6 5 10 10 C 1.54328 * 107.27199 * 181.02398 * 9 8 6 11 11 C 1.55154 * 102.94203 * 22.19119 * 10 9 8 12 12 O 1.42900 * 111.00430 * 82.57289 * 11 10 9 13 13 C 1.50699 * 111.00536 * 206.38758 * 11 10 9 14 14 H 1.08003 * 119.99957 * 359.97438 * 13 11 10 15 15 C 1.37872 * 120.00221 * 180.02562 * 13 11 10 16 16 N 1.31513 * 120.00096 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00011 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47194 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47372 * 120.00055 * 17 15 13 20 20 H 1.48508 * 109.46836 * 240.00089 * 17 15 13 21 21 C 1.47430 * 125.65000 * 179.71484 * 8 6 5 22 22 O 1.42897 * 109.46745 * 119.99552 * 2 1 3 23 23 C 1.35898 * 117.00337 * 275.18234 * 22 2 1 24 24 C 1.38735 * 120.05702 * 5.19494 * 23 22 2 25 25 C 1.38139 * 119.94830 * 180.29877 * 24 23 22 26 26 C 1.38266 * 120.05450 * 359.94876 * 25 24 23 27 27 C 1.38272 * 120.11366 * 0.04835 * 26 25 24 28 28 C 1.38149 * 120.05155 * 359.97438 * 27 26 25 29 29 H 1.08991 * 109.47381 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47065 * 300.00776 * 1 2 3 31 31 H 1.09006 * 109.46679 * 59.99770 * 1 2 3 32 32 H 1.08999 * 109.47270 * 300.00189 * 4 2 1 33 33 H 1.09007 * 109.46722 * 60.00141 * 4 2 1 34 34 H 0.97008 * 120.00442 * 0.02562 * 5 4 2 35 35 H 1.09005 * 109.88107 * 300.43786 * 9 8 6 36 36 H 1.08998 * 109.88242 * 61.60822 * 9 8 6 37 37 H 1.08996 * 110.72211 * 140.55556 * 10 9 8 38 38 H 1.09005 * 110.71626 * 263.65142 * 10 9 8 39 39 H 0.96700 * 113.99500 * 180.02562 * 12 11 10 40 40 H 0.96997 * 120.00193 * 180.02562 * 16 15 13 41 41 H 1.08996 * 110.37044 * 274.74942 * 21 8 6 42 42 H 1.09003 * 110.36238 * 37.07430 * 21 8 6 43 43 H 1.07999 * 120.02401 * 0.24626 * 24 23 22 44 44 H 1.07992 * 119.97623 * 179.97438 * 25 24 23 45 45 H 1.07995 * 119.94847 * 180.02562 * 26 25 24 46 46 H 1.07994 * 119.97351 * 179.97438 * 27 26 25 47 47 H 1.08006 * 120.02504 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5050 -0.7207 -1.2495 6 6 4.1789 -1.3047 -2.2600 7 8 3.5710 -1.8316 -3.1718 8 7 5.5267 -1.3047 -2.2600 9 6 6.3835 -0.7073 -1.2254 10 6 7.8479 -0.9276 -1.6598 11 6 7.7279 -1.1376 -3.1924 12 8 7.6570 0.1147 -3.8770 13 6 8.8695 -1.9714 -3.7144 14 1 9.6284 -2.3330 -3.0363 15 6 8.9458 -2.2719 -5.0579 16 7 8.0225 -1.8304 -5.8839 17 14 10.3605 -3.3061 -5.7048 18 1 11.2585 -3.6748 -4.5810 19 1 9.8244 -4.5388 -6.3358 20 1 11.1236 -2.5260 -6.7121 21 6 6.3860 -1.9092 -3.2943 22 8 2.0063 -0.6735 1.1668 23 6 2.1088 0.0618 2.3051 24 6 1.6578 1.3736 2.3279 25 6 1.7688 2.1209 3.4844 26 6 2.3278 1.5623 4.6189 27 6 2.7780 0.2551 4.5989 28 6 2.6697 -0.4963 3.4446 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.9901 -0.3007 -0.5219 35 1 6.1776 0.3600 -1.1442 36 1 6.2036 -1.1956 -0.2677 37 1 8.4527 -0.0486 -1.4372 38 1 8.2641 -1.8124 -1.1780 39 1 7.5807 0.0340 -4.8376 40 1 8.0760 -2.0420 -6.8290 41 1 6.5384 -2.9688 -3.0891 42 1 5.9445 -1.7727 -4.2815 43 1 1.2211 1.8103 1.4420 44 1 1.4182 3.1422 3.5025 45 1 2.4133 2.1480 5.5222 46 1 3.2147 -0.1789 5.4862 47 1 3.0219 -1.5172 3.4293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591959579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:02 Heat of formation + Delta-G solvation = -87.157856 kcal Electronic energy + Delta-G solvation = -28949.852615 eV Core-core repulsion = 24905.045344 eV Total energy + Delta-G solvation = -4044.807271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.61819 -39.55391 -38.01247 -37.24797 -34.66897 -34.21671 -32.24082 -32.12260 -31.09463 -29.99140 -29.88441 -27.84896 -26.47299 -24.68264 -23.59856 -22.72241 -22.40521 -21.09687 -19.62337 -19.40064 -18.67184 -17.64572 -17.07985 -16.48368 -16.12161 -15.88572 -15.34165 -15.21208 -14.96733 -14.85772 -14.40032 -14.22419 -13.92807 -13.72035 -13.45719 -13.08037 -12.96700 -12.83930 -12.73493 -12.53245 -12.47633 -12.03932 -11.84004 -11.60720 -11.48367 -11.38608 -11.24144 -11.04606 -10.89007 -10.76419 -10.56200 -10.45407 -10.15644 -9.62030 -9.37513 -9.27606 -8.83640 -8.66758 -8.45302 -8.33906 -7.64632 -6.27283 -4.36602 1.06102 1.18324 2.86430 3.11678 3.21589 3.29756 3.33140 3.52762 3.77592 4.26220 4.34688 4.44247 4.55638 4.59805 4.69643 4.77286 4.86680 4.99987 5.09908 5.11869 5.29656 5.33469 5.37266 5.44918 5.60827 5.68350 5.69688 5.74117 5.78432 5.84641 6.05759 6.06255 6.13577 6.14205 6.26342 6.50885 6.53902 6.72962 6.73983 6.90248 6.98484 7.18615 7.25371 7.35361 7.65046 7.76675 8.02857 8.55527 8.67894 9.15097 9.33190 9.48840 10.80026 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.002508 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.488424 B =11162.054945 C =12007.762957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.080 0.920 4 C 0.148 3.852 5 N -0.749 5.749 6 C 0.717 3.283 7 O -0.598 6.598 8 N -0.626 5.626 9 C 0.106 3.894 10 C -0.116 4.116 11 C 0.249 3.751 12 O -0.584 6.584 13 C -0.536 4.536 14 H 0.068 0.932 15 C 0.070 3.930 16 N -0.894 5.894 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.112 3.888 22 O -0.304 6.304 23 C 0.133 3.867 24 C -0.212 4.212 25 C -0.081 4.081 26 C -0.162 4.162 27 C -0.081 4.081 28 C -0.153 4.153 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.395 0.605 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.386 0.614 40 H 0.270 0.730 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.129 0.871 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.128 0.872 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.291 6.834 18.072 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.015 3.985 3 H 0.098 0.902 4 C 0.023 3.977 5 N -0.407 5.407 6 C 0.419 3.581 7 O -0.478 6.478 8 N -0.363 5.363 9 C -0.017 4.017 10 C -0.154 4.154 11 C 0.208 3.792 12 O -0.394 6.394 13 C -0.575 4.575 14 H 0.086 0.914 15 C -0.133 4.133 16 N -0.534 5.534 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.010 4.010 22 O -0.218 6.218 23 C 0.088 3.912 24 C -0.231 4.231 25 C -0.099 4.099 26 C -0.180 4.180 27 C -0.099 4.099 28 C -0.172 4.172 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.228 0.772 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.238 0.762 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.147 0.853 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.146 0.854 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.786 6.456 17.742 23.378 hybrid contribution 0.730 -0.362 -0.636 1.034 sum -13.055 6.094 17.107 22.366 Atomic orbital electron populations 1.22299 0.93802 1.04043 1.03310 1.22778 0.95063 0.97017 0.83682 0.90182 1.21207 0.80186 1.01670 0.94679 1.44976 1.06076 1.63460 1.26154 1.15481 0.80863 0.79514 0.82219 1.90883 1.67290 1.52023 1.37576 1.47877 1.02695 1.59134 1.26562 1.21918 0.92487 0.96902 0.90434 1.22596 0.93069 1.01843 0.97893 1.19634 0.90278 0.82161 0.87114 1.86057 1.96587 1.31202 1.25582 1.21535 1.09348 1.33012 0.93562 0.91427 1.25090 0.96161 0.95199 0.96854 1.69577 1.33655 1.45611 1.04514 0.86337 0.81776 0.79807 0.78897 1.19581 1.20755 1.20764 1.23201 0.90988 0.96476 0.90384 1.86202 1.80882 1.38276 1.16421 1.19066 0.94958 0.90289 0.86909 1.21335 1.07126 0.94405 1.00187 1.20953 0.97221 0.99358 0.92365 1.21065 1.02335 0.95906 0.98741 1.20989 0.97710 0.94000 0.97181 1.20508 1.03806 1.01436 0.91400 0.90851 0.91416 0.90370 0.90711 0.89735 0.77154 0.92776 0.93158 0.90808 0.90487 0.76187 0.91938 0.92467 0.90097 0.85281 0.85916 0.86043 0.85437 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.17 37.16 0.34 -0.99 16 2 C 0.07 0.69 2.31 -26.73 -0.06 0.63 16 3 H 0.08 0.70 6.31 -51.93 -0.33 0.38 16 4 C 0.15 1.88 5.37 -4.05 -0.02 1.86 16 5 N -0.75 -11.77 5.41 -65.23 -0.35 -12.12 16 6 C 0.72 14.98 8.49 -86.92 -0.74 14.25 16 7 O -0.60 -14.70 16.60 5.28 0.09 -14.62 16 8 N -0.63 -13.33 3.33 -176.09 -0.59 -13.92 16 9 C 0.11 1.91 6.15 -3.06 -0.02 1.89 16 10 C -0.12 -2.32 6.12 -24.90 -0.15 -2.48 16 11 C 0.25 6.08 0.89 -89.51 -0.08 6.00 16 12 O -0.58 -15.14 13.19 -35.23 -0.46 -15.61 16 13 C -0.54 -13.97 8.25 -34.44 -0.28 -14.26 16 14 H 0.07 1.72 7.77 -52.48 -0.41 1.32 16 15 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 16 N -0.89 -24.00 10.72 55.43 0.59 -23.41 16 17 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.11 2.74 5.65 -2.41 -0.01 2.73 16 22 O -0.30 -3.46 9.55 -19.42 -0.19 -3.64 16 23 C 0.13 1.40 6.60 -39.22 -0.26 1.14 16 24 C -0.21 -1.91 8.24 -39.43 -0.33 -2.24 16 25 C -0.08 -0.65 10.04 -39.61 -0.40 -1.05 16 26 C -0.16 -1.28 10.04 -39.56 -0.40 -1.67 16 27 C -0.08 -0.67 10.04 -39.60 -0.40 -1.07 16 28 C -0.15 -1.51 9.99 -39.43 -0.39 -1.90 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.47 6.91 -51.93 -0.36 0.11 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.39 5.55 7.33 -40.82 -0.30 5.25 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.08 1.45 8.02 -51.93 -0.42 1.03 16 39 H 0.39 10.38 6.93 45.56 0.32 10.70 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.06 1.44 8.04 -51.93 -0.42 1.02 16 42 H 0.08 2.24 7.64 -51.93 -0.40 1.84 16 43 H 0.13 0.99 5.43 -52.49 -0.28 0.70 16 44 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 384.20 15.07 5.79 5.79 Total: -1.00 -31.35 384.20 -9.81 -41.16 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -6.38 Total: 16.42 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -3.29 Total: 4.57 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.34 Total: -49.44 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.56 Total: -33.86 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.35 -9.81 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591959579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.002 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds