Wall clock time and date at job start Tue Mar 31 2020 17:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47198 * 2 1 4 4 C 1.52997 * 109.47131 * 239.99766 * 2 1 3 5 5 N 1.46495 * 109.46975 * 179.97438 * 4 2 1 6 6 C 1.34775 * 120.00018 * 179.97438 * 5 4 2 7 7 O 1.21592 * 120.00129 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00099 * 180.02562 * 6 5 4 9 9 C 1.47023 * 125.64933 * 0.02576 * 8 6 5 10 10 C 1.54328 * 107.27199 * 181.02398 * 9 8 6 11 11 C 1.55154 * 102.94203 * 22.19119 * 10 9 8 12 12 O 1.42900 * 111.00430 * 82.57289 * 11 10 9 13 13 C 1.50699 * 111.00536 * 206.38758 * 11 10 9 14 14 H 1.08003 * 119.99957 * 359.97438 * 13 11 10 15 15 C 1.37872 * 120.00221 * 180.02562 * 13 11 10 16 16 N 1.31513 * 120.00096 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00011 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47194 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47372 * 120.00055 * 17 15 13 20 20 H 1.48508 * 109.46836 * 240.00089 * 17 15 13 21 21 C 1.47430 * 125.65000 * 179.71484 * 8 6 5 22 22 O 1.42897 * 109.46745 * 119.99552 * 2 1 3 23 23 C 1.35898 * 117.00337 * 275.18234 * 22 2 1 24 24 C 1.38735 * 120.05702 * 5.19494 * 23 22 2 25 25 C 1.38139 * 119.94830 * 180.29877 * 24 23 22 26 26 C 1.38266 * 120.05450 * 359.94876 * 25 24 23 27 27 C 1.38272 * 120.11366 * 0.04835 * 26 25 24 28 28 C 1.38149 * 120.05155 * 359.97438 * 27 26 25 29 29 H 1.08991 * 109.47381 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47065 * 300.00776 * 1 2 3 31 31 H 1.09006 * 109.46679 * 59.99770 * 1 2 3 32 32 H 1.08999 * 109.47270 * 300.00189 * 4 2 1 33 33 H 1.09007 * 109.46722 * 60.00141 * 4 2 1 34 34 H 0.97008 * 120.00442 * 0.02562 * 5 4 2 35 35 H 1.09005 * 109.88107 * 300.43786 * 9 8 6 36 36 H 1.08998 * 109.88242 * 61.60822 * 9 8 6 37 37 H 1.08996 * 110.72211 * 140.55556 * 10 9 8 38 38 H 1.09005 * 110.71626 * 263.65142 * 10 9 8 39 39 H 0.96700 * 113.99500 * 180.02562 * 12 11 10 40 40 H 0.96997 * 120.00193 * 180.02562 * 16 15 13 41 41 H 1.08996 * 110.37044 * 274.74942 * 21 8 6 42 42 H 1.09003 * 110.36238 * 37.07430 * 21 8 6 43 43 H 1.07999 * 120.02401 * 0.24626 * 24 23 22 44 44 H 1.07992 * 119.97623 * 179.97438 * 25 24 23 45 45 H 1.07995 * 119.94847 * 180.02562 * 26 25 24 46 46 H 1.07994 * 119.97351 * 179.97438 * 27 26 25 47 47 H 1.08006 * 120.02504 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5050 -0.7207 -1.2495 6 6 4.1789 -1.3047 -2.2600 7 8 3.5710 -1.8316 -3.1718 8 7 5.5267 -1.3047 -2.2600 9 6 6.3835 -0.7073 -1.2254 10 6 7.8479 -0.9276 -1.6598 11 6 7.7279 -1.1376 -3.1924 12 8 7.6570 0.1147 -3.8770 13 6 8.8695 -1.9714 -3.7144 14 1 9.6284 -2.3330 -3.0363 15 6 8.9458 -2.2719 -5.0579 16 7 8.0225 -1.8304 -5.8839 17 14 10.3605 -3.3061 -5.7048 18 1 11.2585 -3.6748 -4.5810 19 1 9.8244 -4.5388 -6.3358 20 1 11.1236 -2.5260 -6.7121 21 6 6.3860 -1.9092 -3.2943 22 8 2.0063 -0.6735 1.1668 23 6 2.1088 0.0618 2.3051 24 6 1.6578 1.3736 2.3279 25 6 1.7688 2.1209 3.4844 26 6 2.3278 1.5623 4.6189 27 6 2.7780 0.2551 4.5989 28 6 2.6697 -0.4963 3.4446 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.9901 -0.3007 -0.5219 35 1 6.1776 0.3600 -1.1442 36 1 6.2036 -1.1956 -0.2677 37 1 8.4527 -0.0486 -1.4372 38 1 8.2641 -1.8124 -1.1780 39 1 7.5807 0.0340 -4.8376 40 1 8.0760 -2.0420 -6.8290 41 1 6.5384 -2.9688 -3.0891 42 1 5.9445 -1.7727 -4.2815 43 1 1.2211 1.8103 1.4420 44 1 1.4182 3.1422 3.5025 45 1 2.4133 2.1480 5.5222 46 1 3.2147 -0.1789 5.4862 47 1 3.0219 -1.5172 3.4293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591959579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:01 Heat of formation + Delta-G solvation = -108.552131 kcal Electronic energy + Delta-G solvation = -28950.780341 eV Core-core repulsion = 24905.045344 eV Total energy + Delta-G solvation = -4045.734997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.51070 -41.01260 -39.21051 -38.52912 -36.07717 -35.91112 -34.14846 -33.23888 -31.86611 -31.51530 -30.53933 -29.61342 -27.79955 -26.33598 -24.36493 -24.03681 -23.32626 -21.91729 -21.45032 -20.92088 -19.39404 -19.31251 -18.87287 -17.54555 -17.16155 -16.96053 -16.80717 -16.65940 -16.19482 -16.11709 -15.74293 -15.39615 -15.17893 -14.81642 -14.65251 -14.42584 -14.38574 -13.99037 -13.76275 -13.63212 -13.48411 -13.41823 -13.26546 -13.07293 -12.86514 -12.52835 -12.42842 -12.30628 -12.20333 -12.16272 -12.11054 -11.96211 -11.58206 -11.36753 -11.22761 -10.65230 -10.35866 -10.23418 -9.90248 -9.34523 -9.12981 -8.25478 -6.42301 0.43619 0.53300 1.41347 1.44738 1.55727 1.64092 2.08989 2.17020 2.38499 2.89213 3.00556 3.03949 3.53553 3.79399 3.83634 3.95172 4.02432 4.06339 4.10867 4.17198 4.31589 4.31998 4.41086 4.52502 4.56126 4.58327 4.64533 4.70793 4.75014 4.80987 4.89992 5.03922 5.08311 5.12936 5.18034 5.27911 5.36967 5.41447 5.43074 5.44878 5.53135 5.65398 5.77068 5.90565 6.01406 6.13128 6.48316 6.65067 7.01762 7.30364 7.39713 7.52802 8.80491 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.002508 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.488424 B =11162.054945 C =12007.762957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.080 3.920 3 H 0.094 0.906 4 C 0.143 3.857 5 N -0.729 5.729 6 C 0.711 3.289 7 O -0.643 6.643 8 N -0.632 5.632 9 C 0.109 3.891 10 C -0.110 4.110 11 C 0.233 3.767 12 O -0.589 6.589 13 C -0.554 4.554 14 H 0.071 0.929 15 C 0.024 3.976 16 N -0.918 5.918 17 Si 0.967 3.033 18 H -0.263 1.263 19 H -0.283 1.283 20 H -0.279 1.279 21 C 0.125 3.875 22 O -0.323 6.323 23 C 0.112 3.888 24 C -0.217 4.217 25 C -0.086 4.086 26 C -0.165 4.165 27 C -0.085 4.085 28 C -0.172 4.172 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.377 0.623 40 H 0.270 0.730 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.308 8.103 20.530 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.023 3.977 3 H 0.112 0.888 4 C 0.019 3.981 5 N -0.386 5.386 6 C 0.412 3.588 7 O -0.526 6.526 8 N -0.369 5.369 9 C -0.013 4.013 10 C -0.148 4.148 11 C 0.193 3.807 12 O -0.398 6.398 13 C -0.592 4.592 14 H 0.089 0.911 15 C -0.177 4.177 16 N -0.558 5.558 17 Si 0.792 3.208 18 H -0.187 1.187 19 H -0.209 1.209 20 H -0.205 1.205 21 C 0.001 3.999 22 O -0.238 6.238 23 C 0.068 3.932 24 C -0.236 4.236 25 C -0.104 4.104 26 C -0.183 4.183 27 C -0.103 4.103 28 C -0.191 4.191 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.242 0.758 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.228 0.772 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.162 0.838 46 H 0.165 0.835 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.810 7.760 20.278 25.732 hybrid contribution 0.695 -0.732 -1.335 1.674 sum -13.115 7.028 18.942 24.088 Atomic orbital electron populations 1.22278 0.92014 1.04079 1.04553 1.22724 0.96232 0.96761 0.81952 0.88819 1.21415 0.78216 1.01615 0.96840 1.44842 1.07213 1.61775 1.24728 1.15714 0.80712 0.79598 0.82735 1.90844 1.68169 1.53994 1.39592 1.47830 1.03104 1.59302 1.26620 1.22078 0.90550 0.98109 0.90604 1.22595 0.94782 1.03029 0.94378 1.19874 0.89581 0.81550 0.89734 1.86046 1.96610 1.32200 1.24991 1.21857 1.09952 1.33391 0.93994 0.91090 1.25861 0.98344 0.96258 0.97219 1.69690 1.35033 1.46473 1.04635 0.85370 0.79013 0.78060 0.78351 1.18674 1.20935 1.20498 1.22769 0.91757 0.96001 0.89394 1.86158 1.81462 1.39156 1.17027 1.19261 0.96207 0.91055 0.86724 1.21524 1.07014 0.93911 1.01147 1.21302 0.96708 1.00364 0.92019 1.21419 1.01403 0.95873 0.99601 1.21276 0.97421 0.94281 0.97304 1.20688 1.04587 1.01719 0.92104 0.91479 0.90426 0.88792 0.91968 0.89377 0.75821 0.91118 0.89753 0.89609 0.89246 0.77214 0.92004 0.93945 0.94236 0.84101 0.83693 0.83821 0.83518 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.17 71.98 0.66 -1.63 16 2 C 0.08 1.42 2.31 30.60 0.07 1.49 16 3 H 0.09 1.43 6.31 -2.39 -0.02 1.41 16 4 C 0.14 3.57 5.37 86.38 0.46 4.03 16 5 N -0.73 -22.30 5.41 -478.54 -2.59 -24.89 16 6 C 0.71 29.91 8.49 179.06 1.52 31.43 16 7 O -0.64 -32.64 16.60 -4.01 -0.07 -32.71 16 8 N -0.63 -26.90 3.33 -829.28 -2.76 -29.66 16 9 C 0.11 3.69 6.15 86.73 0.53 4.22 16 10 C -0.11 -4.22 6.12 31.78 0.19 -4.03 16 11 C 0.23 11.46 0.89 -10.07 -0.01 11.45 16 12 O -0.59 -30.97 13.19 -148.98 -1.97 -32.94 16 13 C -0.55 -28.96 8.25 25.60 0.21 -28.75 16 14 H 0.07 3.57 7.77 -2.91 -0.02 3.55 16 15 C 0.02 1.24 5.30 84.65 0.45 1.69 16 16 N -0.92 -50.65 10.72 21.45 0.23 -50.42 16 17 Si 0.97 42.02 29.54 68.60 2.03 44.05 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 C 0.12 6.30 5.65 86.93 0.49 6.79 16 22 O -0.32 -7.01 9.55 -92.40 -0.88 -7.89 16 23 C 0.11 2.21 6.60 22.51 0.15 2.35 16 24 C -0.22 -3.44 8.24 22.37 0.18 -3.25 16 25 C -0.09 -1.15 10.04 22.25 0.22 -0.92 16 26 C -0.16 -2.13 10.04 22.28 0.22 -1.91 16 27 C -0.08 -1.24 10.04 22.26 0.22 -1.01 16 28 C -0.17 -3.21 9.99 22.37 0.22 -2.99 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.91 6.91 -2.39 -0.02 0.90 16 31 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.41 10.66 7.33 -92.70 -0.68 9.98 16 35 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.09 3.18 8.02 -2.38 -0.02 3.16 16 39 H 0.38 20.99 6.93 -74.06 -0.51 20.48 16 40 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.04 2.21 8.04 -2.39 -0.02 2.20 16 42 H 0.04 2.29 7.64 -2.39 -0.02 2.28 16 43 H 0.14 1.77 5.43 -2.91 -0.02 1.76 16 44 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 45 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 46 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 47 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -69.70 384.20 -0.39 -70.09 By element: Atomic # 1 Polarization: 45.61 SS G_CDS: -0.20 Total: 45.41 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 5.81 Total: 18.97 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -5.12 Total: -104.98 kcal Atomic # 8 Polarization: -70.63 SS G_CDS: -2.91 Total: -73.54 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -69.70 -0.39 -70.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591959579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.461 kcal (2) G-P(sol) polarization free energy of solvation -69.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds