Wall clock time and date at job start Tue Mar 31 2020 17:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53001 * 109.47054 * 120.00112 * 2 1 3 5 5 N 1.46501 * 109.47278 * 184.99981 * 4 2 1 6 6 C 1.34778 * 120.00052 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99906 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99939 * 180.02562 * 6 5 4 9 9 C 1.47017 * 125.64812 * 359.68426 * 8 6 5 10 10 C 1.54336 * 107.26518 * 178.85498 * 9 8 6 11 11 C 1.55155 * 103.01955 * 338.14154 * 10 9 8 12 12 O 1.42903 * 111.00532 * 277.23374 * 11 10 9 13 13 C 1.50702 * 111.03856 * 153.39967 * 11 10 9 14 14 H 1.08002 * 119.99575 * 6.32661 * 13 11 10 15 15 C 1.37870 * 120.00213 * 186.33036 * 13 11 10 16 16 N 1.31517 * 119.99992 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00191 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47131 * 90.00327 * 17 15 13 19 19 H 1.48502 * 109.47282 * 210.00375 * 17 15 13 20 20 H 1.48498 * 109.46919 * 329.99923 * 17 15 13 21 21 C 1.47426 * 125.64751 * 180.02562 * 8 6 5 22 22 O 1.42906 * 109.47083 * 239.99573 * 2 1 3 23 23 C 1.35899 * 116.99634 * 84.80974 * 22 2 1 24 24 C 1.38735 * 120.05622 * 174.35401 * 23 22 2 25 25 C 1.38143 * 119.94356 * 179.74197 * 24 23 22 26 26 C 1.38264 * 120.05710 * 0.51086 * 25 24 23 27 27 C 1.38265 * 120.11131 * 359.76651 * 26 25 24 28 28 C 1.38150 * 120.05539 * 359.97405 * 27 26 25 29 29 H 1.09002 * 109.47493 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47136 * 300.00159 * 1 2 3 31 31 H 1.09006 * 109.47024 * 59.99864 * 1 2 3 32 32 H 1.09001 * 109.47071 * 305.00049 * 4 2 1 33 33 H 1.09003 * 109.47173 * 64.99877 * 4 2 1 34 34 H 0.96997 * 119.99624 * 359.97438 * 5 4 2 35 35 H 1.09000 * 109.88661 * 298.39586 * 9 8 6 36 36 H 1.09000 * 109.88385 * 59.56401 * 9 8 6 37 37 H 1.09009 * 110.84883 * 219.67807 * 10 9 8 38 38 H 1.09000 * 110.51886 * 96.45605 * 10 9 8 39 39 H 0.96702 * 114.00170 * 173.65275 * 12 11 10 40 40 H 0.97003 * 120.00113 * 179.97438 * 16 15 13 41 41 H 1.09003 * 110.36240 * 322.92022 * 21 8 6 42 42 H 1.08992 * 110.37147 * 85.14046 * 21 8 6 43 43 H 1.07998 * 120.02503 * 359.97438 * 24 23 22 44 44 H 1.07999 * 119.96865 * 180.27212 * 25 24 23 45 45 H 1.07997 * 119.94769 * 179.74266 * 26 25 24 46 46 H 1.07999 * 119.97259 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.02817 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.6179 1.3110 6 6 4.1730 -1.1836 2.3326 7 8 3.5683 -1.7793 3.2032 8 7 5.5161 -1.0881 2.3896 9 6 6.3691 -0.4051 1.4061 10 6 7.8264 -0.5297 1.8987 11 6 7.6602 -0.7941 3.4185 12 8 7.4719 0.4287 4.1336 13 6 8.8364 -1.5610 3.9660 14 1 9.6918 -1.7591 3.3371 15 6 8.8204 -2.0095 5.2696 16 7 7.7786 -1.7687 6.0352 17 14 10.2780 -2.9607 5.9480 18 1 11.2515 -2.0132 6.5478 19 1 9.8082 -3.9117 6.9873 20 1 10.9331 -3.7134 4.8482 21 6 6.3739 -1.6572 3.4450 22 8 2.0063 -0.6738 -1.1668 23 6 2.1087 0.0615 -2.3051 24 6 2.6731 -0.4954 -3.4436 25 6 2.7711 0.2524 -4.6010 26 6 2.3169 1.5581 -4.6225 27 6 1.7592 2.1173 -3.4875 28 6 1.6540 1.3720 -2.3291 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -0.2618 2.1370 33 1 1.7516 -1.7716 1.2056 34 1 3.9824 -0.1430 0.6162 35 1 6.2637 -0.8800 0.4307 36 1 6.0905 0.6467 1.3406 37 1 8.3748 0.3965 1.7261 38 1 8.3234 -1.3695 1.4131 39 1 7.2671 0.3086 5.0711 40 1 7.7672 -2.0846 6.9522 41 1 5.8841 -1.5782 4.4155 42 1 6.6087 -2.6981 3.2228 43 1 3.0321 -1.5138 -3.4260 44 1 3.2064 -0.1822 -5.4887 45 1 2.3982 2.1424 -5.5271 46 1 1.4056 3.1375 -3.5067 47 1 1.2187 1.8093 -1.4427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591959581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:09 Heat of formation + Delta-G solvation = -87.053722 kcal Electronic energy + Delta-G solvation = -28936.757511 eV Core-core repulsion = 24891.954755 eV Total energy + Delta-G solvation = -4044.802756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61494 -39.56218 -38.01524 -37.26363 -34.67975 -34.19281 -32.22713 -32.20366 -31.09529 -29.99346 -29.88378 -27.81178 -26.47098 -24.68079 -23.59901 -22.72828 -22.40634 -21.11159 -19.64258 -19.41662 -18.66184 -17.63609 -17.02292 -16.47932 -16.12749 -15.88700 -15.35751 -15.22495 -14.95443 -14.85059 -14.42775 -14.22232 -13.94351 -13.72286 -13.47316 -13.07815 -12.97462 -12.82832 -12.71419 -12.56578 -12.45984 -12.03412 -11.83890 -11.64017 -11.47157 -11.36829 -11.25025 -11.01671 -10.89164 -10.79937 -10.57740 -10.44887 -10.17085 -9.60951 -9.33935 -9.27764 -8.84110 -8.67149 -8.45355 -8.32991 -7.65788 -6.24906 -4.34651 1.05912 1.18235 2.87583 3.10660 3.23416 3.30403 3.32807 3.52590 3.77557 4.27336 4.34636 4.43935 4.55524 4.59583 4.69744 4.77161 4.86418 5.02156 5.09712 5.11616 5.29668 5.33507 5.37131 5.44157 5.60650 5.68071 5.69666 5.73860 5.77305 5.82599 6.04088 6.05983 6.13450 6.14083 6.26163 6.50897 6.53823 6.72463 6.73416 6.91830 6.99007 7.18653 7.26179 7.35445 7.66227 7.77082 8.06284 8.55515 8.69678 9.15080 9.32671 9.40839 10.82109 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019352 B = 0.002497 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.534168 B =11212.695157 C =12021.729586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.080 0.920 4 C 0.147 3.853 5 N -0.750 5.750 6 C 0.717 3.283 7 O -0.598 6.598 8 N -0.627 5.627 9 C 0.105 3.895 10 C -0.115 4.115 11 C 0.248 3.752 12 O -0.583 6.583 13 C -0.537 4.537 14 H 0.066 0.934 15 C 0.071 3.929 16 N -0.892 5.892 17 Si 0.903 3.097 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.114 3.886 22 O -0.304 6.304 23 C 0.133 3.867 24 C -0.153 4.153 25 C -0.081 4.081 26 C -0.162 4.162 27 C -0.081 4.081 28 C -0.212 4.212 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.394 0.606 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.381 0.619 40 H 0.270 0.730 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.056 6.687 -18.380 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.015 3.985 3 H 0.098 0.902 4 C 0.022 3.978 5 N -0.408 5.408 6 C 0.419 3.581 7 O -0.477 6.477 8 N -0.364 5.364 9 C -0.018 4.018 10 C -0.153 4.153 11 C 0.208 3.792 12 O -0.391 6.391 13 C -0.576 4.576 14 H 0.084 0.916 15 C -0.133 4.133 16 N -0.530 5.530 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.008 4.008 22 O -0.218 6.218 23 C 0.088 3.912 24 C -0.172 4.172 25 C -0.099 4.099 26 C -0.181 4.181 27 C -0.099 4.099 28 C -0.231 4.231 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.228 0.772 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.231 0.769 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.494 6.240 -18.076 23.404 hybrid contribution 0.714 -0.335 0.629 1.009 sum -12.779 5.905 -17.446 22.418 Atomic orbital electron populations 1.22297 0.93783 1.04051 1.03317 1.22770 0.95058 0.96998 0.83703 0.90185 1.21199 0.80294 1.01657 0.94625 1.45006 1.06624 1.61384 1.27744 1.15474 0.80831 0.79844 0.81926 1.90886 1.67286 1.48866 1.40626 1.47916 1.03218 1.57270 1.27988 1.21923 0.92605 0.95938 0.91345 1.22588 0.93187 1.01965 0.97592 1.19637 0.90594 0.82078 0.86928 1.86100 1.93721 1.32560 1.26744 1.21449 1.02954 1.35687 0.97465 0.91556 1.25083 0.96244 0.95101 0.96835 1.69724 1.28863 1.46132 1.08303 0.86408 0.82141 0.79607 0.78765 1.20425 1.21027 1.19721 1.23136 0.90960 0.96993 0.89729 1.86211 1.80902 1.38250 1.16434 1.19066 0.94917 0.90312 0.86910 1.20507 1.03783 1.01491 0.91383 1.20985 0.97726 0.94027 0.97148 1.21063 1.02345 0.95901 0.98744 1.20958 0.97223 0.99360 0.92352 1.21339 1.07121 0.94442 1.00161 0.90843 0.90372 0.91408 0.89684 0.90644 0.77232 0.93131 0.92808 0.90807 0.90433 0.76942 0.92020 0.89632 0.92488 0.85180 0.85446 0.86042 0.85911 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.17 37.16 0.34 -0.99 16 2 C 0.07 0.69 2.26 -26.73 -0.06 0.63 16 3 H 0.08 0.70 6.32 -51.93 -0.33 0.38 16 4 C 0.15 1.88 5.34 -4.04 -0.02 1.85 16 5 N -0.75 -11.72 5.46 -65.22 -0.36 -12.08 16 6 C 0.72 14.94 8.49 -86.92 -0.74 14.21 16 7 O -0.60 -14.68 16.60 5.29 0.09 -14.59 16 8 N -0.63 -13.31 3.33 -176.23 -0.59 -13.90 16 9 C 0.11 1.89 6.15 -3.06 -0.02 1.87 16 10 C -0.12 -2.30 6.13 -24.89 -0.15 -2.46 16 11 C 0.25 6.04 0.87 -89.61 -0.08 5.96 16 12 O -0.58 -14.88 13.16 -35.23 -0.46 -15.35 16 13 C -0.54 -14.02 8.27 -34.44 -0.28 -14.31 16 14 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 15 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 16 N -0.89 -23.98 10.69 55.43 0.59 -23.39 16 17 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C 0.11 2.79 5.38 -2.52 -0.01 2.78 16 22 O -0.30 -3.47 9.75 -19.42 -0.19 -3.66 16 23 C 0.13 1.40 6.60 -39.22 -0.26 1.15 16 24 C -0.15 -1.51 9.99 -39.43 -0.39 -1.91 16 25 C -0.08 -0.67 10.04 -39.61 -0.40 -1.07 16 26 C -0.16 -1.27 10.04 -39.56 -0.40 -1.67 16 27 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16 28 C -0.21 -1.91 8.24 -39.43 -0.32 -2.24 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.47 6.90 -51.93 -0.36 0.12 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.39 5.47 7.46 -40.82 -0.30 5.17 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 38 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 39 H 0.38 10.00 7.57 45.56 0.34 10.35 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.09 2.36 7.33 -51.93 -0.38 1.98 16 42 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 43 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.13 0.99 5.43 -52.49 -0.28 0.70 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -31.36 384.52 -9.77 -41.14 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -6.34 Total: 16.07 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -3.29 Total: 4.51 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.35 Total: -49.36 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.57 Total: -33.60 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.36 -9.77 -41.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591959581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.918 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds