Wall clock time and date at job start Tue Mar 31 2020 17:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53001 * 109.47054 * 120.00112 * 2 1 3 5 5 N 1.46501 * 109.47278 * 184.99981 * 4 2 1 6 6 C 1.34778 * 120.00052 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99906 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99939 * 180.02562 * 6 5 4 9 9 C 1.47017 * 125.64812 * 359.68426 * 8 6 5 10 10 C 1.54336 * 107.26518 * 178.85498 * 9 8 6 11 11 C 1.55155 * 103.01955 * 338.14154 * 10 9 8 12 12 O 1.42903 * 111.00532 * 277.23374 * 11 10 9 13 13 C 1.50702 * 111.03856 * 153.39967 * 11 10 9 14 14 H 1.08002 * 119.99575 * 6.32661 * 13 11 10 15 15 C 1.37870 * 120.00213 * 186.33036 * 13 11 10 16 16 N 1.31517 * 119.99992 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00191 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47131 * 90.00327 * 17 15 13 19 19 H 1.48502 * 109.47282 * 210.00375 * 17 15 13 20 20 H 1.48498 * 109.46919 * 329.99923 * 17 15 13 21 21 C 1.47426 * 125.64751 * 180.02562 * 8 6 5 22 22 O 1.42906 * 109.47083 * 239.99573 * 2 1 3 23 23 C 1.35899 * 116.99634 * 84.80974 * 22 2 1 24 24 C 1.38735 * 120.05622 * 174.35401 * 23 22 2 25 25 C 1.38143 * 119.94356 * 179.74197 * 24 23 22 26 26 C 1.38264 * 120.05710 * 0.51086 * 25 24 23 27 27 C 1.38265 * 120.11131 * 359.76651 * 26 25 24 28 28 C 1.38150 * 120.05539 * 359.97405 * 27 26 25 29 29 H 1.09002 * 109.47493 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47136 * 300.00159 * 1 2 3 31 31 H 1.09006 * 109.47024 * 59.99864 * 1 2 3 32 32 H 1.09001 * 109.47071 * 305.00049 * 4 2 1 33 33 H 1.09003 * 109.47173 * 64.99877 * 4 2 1 34 34 H 0.96997 * 119.99624 * 359.97438 * 5 4 2 35 35 H 1.09000 * 109.88661 * 298.39586 * 9 8 6 36 36 H 1.09000 * 109.88385 * 59.56401 * 9 8 6 37 37 H 1.09009 * 110.84883 * 219.67807 * 10 9 8 38 38 H 1.09000 * 110.51886 * 96.45605 * 10 9 8 39 39 H 0.96702 * 114.00170 * 173.65275 * 12 11 10 40 40 H 0.97003 * 120.00113 * 179.97438 * 16 15 13 41 41 H 1.09003 * 110.36240 * 322.92022 * 21 8 6 42 42 H 1.08992 * 110.37147 * 85.14046 * 21 8 6 43 43 H 1.07998 * 120.02503 * 359.97438 * 24 23 22 44 44 H 1.07999 * 119.96865 * 180.27212 * 25 24 23 45 45 H 1.07997 * 119.94769 * 179.74266 * 26 25 24 46 46 H 1.07999 * 119.97259 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.02817 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.6179 1.3110 6 6 4.1730 -1.1836 2.3326 7 8 3.5683 -1.7793 3.2032 8 7 5.5161 -1.0881 2.3896 9 6 6.3691 -0.4051 1.4061 10 6 7.8264 -0.5297 1.8987 11 6 7.6602 -0.7941 3.4185 12 8 7.4719 0.4287 4.1336 13 6 8.8364 -1.5610 3.9660 14 1 9.6918 -1.7591 3.3371 15 6 8.8204 -2.0095 5.2696 16 7 7.7786 -1.7687 6.0352 17 14 10.2780 -2.9607 5.9480 18 1 11.2515 -2.0132 6.5478 19 1 9.8082 -3.9117 6.9873 20 1 10.9331 -3.7134 4.8482 21 6 6.3739 -1.6572 3.4450 22 8 2.0063 -0.6738 -1.1668 23 6 2.1087 0.0615 -2.3051 24 6 2.6731 -0.4954 -3.4436 25 6 2.7711 0.2524 -4.6010 26 6 2.3169 1.5581 -4.6225 27 6 1.7592 2.1173 -3.4875 28 6 1.6540 1.3720 -2.3291 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -0.2618 2.1370 33 1 1.7516 -1.7716 1.2056 34 1 3.9824 -0.1430 0.6162 35 1 6.2637 -0.8800 0.4307 36 1 6.0905 0.6467 1.3406 37 1 8.3748 0.3965 1.7261 38 1 8.3234 -1.3695 1.4131 39 1 7.2671 0.3086 5.0711 40 1 7.7672 -2.0846 6.9522 41 1 5.8841 -1.5782 4.4155 42 1 6.6087 -2.6981 3.2228 43 1 3.0321 -1.5138 -3.4260 44 1 3.2064 -0.1822 -5.4887 45 1 2.3982 2.1424 -5.5271 46 1 1.4056 3.1375 -3.5067 47 1 1.2187 1.8093 -1.4427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591959581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:08 Heat of formation + Delta-G solvation = -108.633173 kcal Electronic energy + Delta-G solvation = -28937.693266 eV Core-core repulsion = 24891.954755 eV Total energy + Delta-G solvation = -4045.738511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.50793 -41.01821 -39.22048 -38.53002 -36.04612 -35.91761 -34.22501 -33.22627 -31.86340 -31.51412 -30.53994 -29.57368 -27.79986 -26.33509 -24.36705 -24.04593 -23.32174 -21.93453 -21.46663 -20.92327 -19.39176 -19.27320 -18.83458 -17.55334 -17.16495 -16.93858 -16.82135 -16.66086 -16.21496 -16.12290 -15.74599 -15.40886 -15.19236 -14.81686 -14.62916 -14.43882 -14.38284 -13.96995 -13.74790 -13.65065 -13.50333 -13.42505 -13.24561 -13.06819 -12.83456 -12.53793 -12.42730 -12.33393 -12.23564 -12.16749 -12.09738 -11.97175 -11.58266 -11.34826 -11.19161 -10.65938 -10.34189 -10.24145 -9.90391 -9.35036 -9.13080 -8.23729 -6.40987 0.43450 0.53213 1.42320 1.44532 1.54280 1.64532 2.09351 2.17130 2.38946 2.89055 3.01911 3.03984 3.53227 3.78737 3.83761 3.95328 4.02439 4.05838 4.07903 4.17711 4.31475 4.32199 4.40361 4.52778 4.56220 4.58239 4.64196 4.70750 4.76090 4.81233 4.89902 5.06245 5.09401 5.12798 5.17936 5.28196 5.36248 5.41295 5.43136 5.46307 5.53014 5.65256 5.76428 5.90517 6.03954 6.14599 6.48367 6.66193 7.01929 7.28150 7.35703 7.53164 8.81492 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019352 B = 0.002497 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.534168 B =11212.695157 C =12021.729586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.080 3.920 3 H 0.094 0.906 4 C 0.143 3.857 5 N -0.730 5.730 6 C 0.711 3.289 7 O -0.643 6.643 8 N -0.633 5.633 9 C 0.108 3.892 10 C -0.110 4.110 11 C 0.233 3.767 12 O -0.586 6.586 13 C -0.555 4.555 14 H 0.069 0.931 15 C 0.025 3.975 16 N -0.915 5.915 17 Si 0.964 3.036 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.128 3.872 22 O -0.324 6.324 23 C 0.112 3.888 24 C -0.173 4.173 25 C -0.085 4.085 26 C -0.165 4.165 27 C -0.086 4.086 28 C -0.217 4.217 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.406 0.594 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.373 0.627 40 H 0.269 0.731 41 H 0.045 0.955 42 H 0.038 0.962 43 H 0.126 0.874 44 H 0.147 0.853 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.051 8.140 -20.809 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.023 3.977 3 H 0.112 0.888 4 C 0.019 3.981 5 N -0.386 5.386 6 C 0.413 3.587 7 O -0.525 6.525 8 N -0.370 5.370 9 C -0.014 4.014 10 C -0.147 4.147 11 C 0.193 3.807 12 O -0.394 6.394 13 C -0.593 4.593 14 H 0.087 0.913 15 C -0.176 4.176 16 N -0.554 5.554 17 Si 0.790 3.210 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.189 1.189 21 C 0.004 3.996 22 O -0.239 6.239 23 C 0.068 3.932 24 C -0.192 4.192 25 C -0.103 4.103 26 C -0.183 4.183 27 C -0.104 4.104 28 C -0.236 4.236 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.242 0.758 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.221 0.779 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.144 0.856 44 H 0.165 0.835 45 H 0.162 0.838 46 H 0.163 0.837 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.493 7.731 -20.580 25.795 hybrid contribution 0.677 -0.765 1.316 1.666 sum -12.816 6.966 -19.264 24.163 Atomic orbital electron populations 1.22277 0.91997 1.04098 1.04556 1.22716 0.96222 0.96755 0.81961 0.88790 1.21398 0.78421 1.01498 0.96769 1.44866 1.07708 1.59832 1.26217 1.15706 0.80682 0.79856 0.82491 1.90847 1.68183 1.50885 1.42631 1.47863 1.03625 1.57524 1.27959 1.22086 0.90638 0.97077 0.91610 1.22589 0.94913 1.03074 0.94165 1.19854 0.89808 0.81621 0.89445 1.86091 1.93704 1.33324 1.26262 1.21784 1.03639 1.36035 0.97883 0.91270 1.25843 0.98530 0.95958 0.97260 1.69850 1.30349 1.46855 1.08372 0.85454 0.79191 0.78313 0.78067 1.19968 1.21230 1.18944 1.22674 0.91580 0.96365 0.88938 1.86167 1.81488 1.39151 1.17055 1.19263 0.96175 0.91094 0.86718 1.20687 1.04584 1.01768 0.92112 1.21272 0.97437 0.94315 0.97257 1.21417 1.01400 0.95852 0.99617 1.21308 0.96697 1.00366 0.91996 1.21526 1.06995 0.93927 1.01131 0.91457 0.88808 0.90410 0.89292 0.92041 0.75840 0.89804 0.90964 0.89507 0.89369 0.77880 0.92198 0.93622 0.94387 0.85620 0.83527 0.83803 0.83665 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.17 71.98 0.66 -1.63 16 2 C 0.08 1.43 2.26 30.59 0.07 1.50 16 3 H 0.09 1.43 6.32 -2.39 -0.02 1.41 16 4 C 0.14 3.57 5.34 86.38 0.46 4.03 16 5 N -0.73 -22.17 5.46 -478.53 -2.61 -24.78 16 6 C 0.71 29.83 8.49 179.06 1.52 31.35 16 7 O -0.64 -32.63 16.60 -4.00 -0.07 -32.69 16 8 N -0.63 -26.85 3.33 -829.72 -2.76 -29.61 16 9 C 0.11 3.64 6.15 86.73 0.53 4.17 16 10 C -0.11 -4.19 6.13 31.79 0.19 -4.00 16 11 C 0.23 11.40 0.87 -10.14 -0.01 11.39 16 12 O -0.59 -30.29 13.16 -148.98 -1.96 -32.25 16 13 C -0.56 -29.10 8.27 25.60 0.21 -28.89 16 14 H 0.07 3.50 7.79 -2.91 -0.02 3.48 16 15 C 0.03 1.32 5.29 84.65 0.45 1.77 16 16 N -0.92 -50.63 10.69 21.45 0.23 -50.41 16 17 Si 0.96 42.17 29.54 68.60 2.03 44.20 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 21 C 0.13 6.48 5.38 86.86 0.47 6.95 16 22 O -0.32 -7.06 9.75 -92.41 -0.90 -7.96 16 23 C 0.11 2.21 6.60 22.51 0.15 2.36 16 24 C -0.17 -3.24 9.99 22.37 0.22 -3.01 16 25 C -0.08 -1.24 10.04 22.25 0.22 -1.01 16 26 C -0.16 -2.13 10.04 22.28 0.22 -1.90 16 27 C -0.09 -1.14 10.04 22.26 0.22 -0.91 16 28 C -0.22 -3.43 8.24 22.37 0.18 -3.24 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 0.91 6.90 -2.38 -0.02 0.90 16 32 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.41 10.48 7.46 -92.71 -0.69 9.79 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 38 H 0.09 3.16 8.03 -2.39 -0.02 3.14 16 39 H 0.37 20.25 7.57 -74.06 -0.56 19.69 16 40 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.05 2.65 7.33 -2.39 -0.02 2.63 16 42 H 0.04 2.02 8.03 -2.39 -0.02 2.00 16 43 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 46 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 47 H 0.14 1.77 5.43 -2.91 -0.02 1.75 16 Total: -1.00 -69.77 384.52 -0.52 -70.29 By element: Atomic # 1 Polarization: 44.57 SS G_CDS: -0.26 Total: 44.31 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 5.78 Total: 18.91 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -5.14 Total: -104.80 kcal Atomic # 8 Polarization: -69.98 SS G_CDS: -2.93 Total: -72.90 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -69.77 -0.52 -70.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591959581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.344 kcal (2) G-P(sol) polarization free energy of solvation -69.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds