Wall clock time and date at job start Tue Mar 31 2020 18:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35973 * 116.99665 * 2 1 4 4 C 1.38554 * 120.08246 * 359.97438 * 3 2 1 5 5 C 1.38248 * 120.01101 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.18405 * 359.97438 * 5 4 3 7 7 C 1.38197 * 120.15925 * 0.02562 * 6 5 4 8 8 C 1.38722 * 119.98846 * 359.97438 * 7 6 5 9 9 N 1.40121 * 120.09023 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00133 * 24.79789 * 9 8 7 11 11 O 1.21291 * 119.99935 * 5.55488 * 10 9 8 12 12 C 1.50699 * 120.00066 * 185.56410 * 10 9 8 13 13 H 1.09006 * 109.47067 * 59.99349 * 12 10 9 14 14 C 1.52997 * 109.46924 * 299.99671 * 12 10 9 15 15 N 1.46896 * 109.47250 * 179.97438 * 12 10 9 16 16 C 1.48533 * 111.00230 * 172.77851 * 15 12 10 17 17 C 1.54941 * 103.22452 * 159.71980 * 16 15 12 18 18 C 1.54595 * 102.92292 * 322.58846 * 17 16 15 19 19 O 1.42898 * 110.30767 * 263.03671 * 18 17 16 20 20 C 1.50707 * 110.30523 * 140.87535 * 18 17 16 21 21 H 1.07999 * 119.99454 * 244.28620 * 20 18 17 22 22 C 1.37870 * 120.00195 * 64.28046 * 20 18 17 23 23 N 1.31522 * 120.00047 * 0.02562 * 22 20 18 24 24 Si 1.86796 * 120.00219 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47215 * 59.99727 * 24 22 20 26 26 H 1.48497 * 109.47361 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46968 * 300.00497 * 24 22 20 28 28 C 1.47904 * 110.99816 * 290.17941 * 15 12 10 29 29 H 1.09001 * 109.47313 * 60.00861 * 1 2 3 30 30 H 1.09010 * 109.46923 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47641 * 300.00221 * 1 2 3 32 32 H 1.07998 * 119.99431 * 359.95572 * 4 3 2 33 33 H 1.08007 * 119.90860 * 179.72461 * 5 4 3 34 34 H 1.07990 * 119.91860 * 179.97438 * 6 5 4 35 35 H 1.08004 * 120.00409 * 180.02562 * 7 6 5 36 36 H 0.97001 * 119.99737 * 204.79564 * 9 8 7 37 37 H 1.09003 * 109.47335 * 64.94115 * 14 12 10 38 38 H 1.09001 * 109.47194 * 184.93842 * 14 12 10 39 39 H 1.09000 * 109.47180 * 304.94122 * 14 12 10 40 40 H 1.08998 * 110.66630 * 278.15769 * 16 15 12 41 41 H 1.09004 * 110.66152 * 41.28784 * 16 15 12 42 42 H 1.09001 * 110.72101 * 204.22944 * 17 16 15 43 43 H 1.09004 * 110.71923 * 80.94761 * 17 16 15 44 44 H 0.96697 * 114.00455 * 295.71965 * 19 18 17 45 45 H 0.97004 * 119.99604 * 180.02562 * 23 22 20 46 46 H 1.08996 * 109.91931 * 333.50574 * 28 15 12 47 47 H 1.09004 * 109.91669 * 94.80614 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2932 2.3746 -0.0005 5 6 1.9223 3.6057 0.0000 6 6 3.3031 3.6808 0.0016 7 6 4.0613 2.5254 0.0021 8 6 3.4372 1.2865 0.0016 9 7 4.2039 0.1137 0.0027 10 6 5.4590 0.1295 0.4937 11 8 5.8894 1.1308 1.0259 12 6 6.3275 -1.0969 0.3814 13 1 6.4591 -1.3539 -0.6698 14 6 5.6595 -2.2635 1.1118 15 7 7.6383 -0.8258 0.9865 16 6 8.4608 -2.0609 1.0506 17 6 9.9049 -1.5181 1.1940 18 6 9.8951 -0.2656 0.2878 19 8 10.4302 -0.5805 -0.9992 20 6 10.6853 0.8478 0.9258 21 1 10.1896 1.7601 1.2231 22 6 12.0409 0.7017 1.1301 23 7 12.6446 -0.4091 0.7677 24 14 13.0205 2.0821 1.9203 25 1 12.4812 2.3587 3.2760 26 1 14.4459 1.6795 2.0267 27 1 12.9132 3.3058 1.0858 28 6 8.4123 0.1322 0.1675 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2146 2.3195 -0.0017 33 1 1.3337 4.5112 -0.0049 34 1 3.7900 4.6447 0.0016 35 1 5.1396 2.5871 0.0038 36 1 3.8314 -0.7096 -0.3499 37 1 4.7278 -2.5218 0.6084 38 1 6.3266 -3.1256 1.1061 39 1 5.4482 -1.9745 2.1413 40 1 8.1872 -2.6607 1.9186 41 1 8.3569 -2.6402 0.1331 42 1 10.6292 -2.2489 0.8342 43 1 10.1130 -1.2442 2.2284 44 1 11.3620 -0.8385 -0.9855 45 1 13.5984 -0.5120 0.9118 46 1 8.0949 0.0718 -0.8735 47 1 8.2677 1.1446 0.5445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592144962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:42 Heat of formation + Delta-G solvation = -74.316959 kcal Electronic energy + Delta-G solvation = -29508.722395 eV Core-core repulsion = 25464.471947 eV Total energy + Delta-G solvation = -4044.250448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89878 -39.64136 -38.16672 -37.23986 -35.07108 -34.70503 -32.00766 -31.99697 -30.28273 -29.63610 -28.48825 -27.63767 -27.38021 -24.45331 -24.29873 -22.63678 -22.19586 -20.51384 -19.65008 -19.35160 -18.56745 -17.40658 -17.12361 -16.83472 -16.07956 -15.79855 -15.46256 -15.20923 -14.87983 -14.76853 -14.37162 -14.22624 -13.93477 -13.85224 -13.58399 -13.15029 -12.80587 -12.51451 -12.34408 -12.15843 -12.05845 -11.81233 -11.65653 -11.60267 -11.42776 -11.33295 -11.20027 -10.97195 -10.85972 -10.60692 -10.49627 -10.43291 -10.19789 -9.87208 -9.39231 -9.10269 -8.67002 -8.51081 -8.04626 -7.85941 -7.75893 -6.12723 -4.17550 1.19552 1.30439 2.77462 2.90071 3.09083 3.32642 3.35753 3.40826 3.74225 4.38776 4.47796 4.60782 4.72246 4.73498 4.84393 4.91293 5.08884 5.11641 5.17056 5.19306 5.28709 5.33189 5.49252 5.57984 5.73504 5.74811 5.83134 6.00249 6.03357 6.10160 6.16227 6.16429 6.27270 6.40204 6.45520 6.51867 6.56043 6.73213 7.05060 7.12428 7.19764 7.32353 7.38552 7.58776 7.67622 7.73195 7.91739 8.24575 8.31435 8.84503 9.48651 9.58937 10.95085 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.002922 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.704074 B = 9580.459781 C =10746.239711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.089 3.911 4 C -0.189 4.189 5 C -0.107 4.107 6 C -0.131 4.131 7 C -0.098 4.098 8 C 0.133 3.867 9 N -0.669 5.669 10 C 0.519 3.481 11 O -0.490 6.490 12 C 0.057 3.943 13 H 0.067 0.933 14 C -0.144 4.144 15 N -0.491 5.491 16 C 0.033 3.967 17 C -0.118 4.118 18 C 0.243 3.757 19 O -0.596 6.596 20 C -0.524 4.524 21 H 0.063 0.937 22 C 0.067 3.933 23 N -0.903 5.903 24 Si 0.900 3.100 25 H -0.275 1.275 26 H -0.287 1.287 27 H -0.276 1.276 28 C 0.059 3.941 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.155 0.845 36 H 0.411 0.589 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.035 0.965 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.383 0.617 45 H 0.266 0.734 46 H 0.030 0.970 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.329 -1.541 -2.663 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.235 6.235 3 C 0.042 3.958 4 C -0.209 4.209 5 C -0.126 4.126 6 C -0.150 4.150 7 C -0.118 4.118 8 C 0.038 3.962 9 N -0.315 5.315 10 C 0.306 3.694 11 O -0.361 6.361 12 C -0.055 4.055 13 H 0.085 0.915 14 C -0.201 4.201 15 N -0.217 5.217 16 C -0.094 4.094 17 C -0.157 4.157 18 C 0.203 3.797 19 O -0.406 6.406 20 C -0.562 4.562 21 H 0.081 0.919 22 C -0.134 4.134 23 N -0.544 5.544 24 Si 0.728 3.272 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.068 4.068 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.173 0.827 36 H 0.247 0.753 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.235 0.765 45 H 0.076 0.924 46 H 0.048 0.952 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.383 -0.790 -1.943 23.477 hybrid contribution 0.707 -0.043 -0.351 0.791 sum -22.676 -0.834 -2.295 22.807 Atomic orbital electron populations 1.23015 0.78318 1.03811 1.01271 1.85992 1.21406 1.26629 1.89428 1.18670 0.90339 0.84926 1.01868 1.20986 0.99605 0.91880 1.08390 1.20899 0.94713 0.96821 1.00180 1.21033 0.93569 0.98390 1.01975 1.21430 1.02295 0.89682 0.98410 1.17174 0.86717 0.87547 1.04761 1.43487 1.14554 1.11151 1.62337 1.20860 0.80985 0.90499 0.77103 1.90680 1.72068 1.33678 1.39675 1.21759 0.92615 0.92456 0.98707 0.91534 1.21860 0.99995 0.96975 1.01319 1.64709 0.99850 1.09971 1.47139 1.23343 0.95620 0.91478 0.98984 1.22995 0.91798 0.98938 1.01970 1.19367 0.88281 0.91287 0.80768 1.86078 1.31901 1.90661 1.31951 1.21686 0.93235 1.02072 1.39224 0.91918 1.25005 0.97725 0.95834 0.94847 1.69614 1.10792 1.25445 1.48501 0.86517 0.78516 0.82200 0.79961 1.20079 1.21301 1.20164 1.22923 0.93464 0.96905 0.93494 0.92745 0.88310 0.92717 0.85392 0.85901 0.85480 0.82733 0.75289 0.92189 0.90805 0.91261 0.91358 0.94690 0.91561 0.91269 0.76515 0.92391 0.95211 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.27 9.91 -19.66 -0.19 -3.47 16 3 C 0.09 1.05 6.70 -39.07 -0.26 0.79 16 4 C -0.19 -1.90 9.04 -39.46 -0.36 -2.26 16 5 C -0.11 -1.09 10.04 -39.56 -0.40 -1.48 16 6 C -0.13 -1.56 10.04 -39.58 -0.40 -1.96 16 7 C -0.10 -1.42 8.72 -39.42 -0.34 -1.77 16 8 C 0.13 1.85 6.45 -83.49 -0.54 1.31 16 9 N -0.67 -8.99 5.22 -9.75 -0.05 -9.04 16 10 C 0.52 8.54 6.76 -10.98 -0.07 8.46 16 11 O -0.49 -9.85 12.25 5.55 0.07 -9.78 16 12 C 0.06 0.91 2.28 -68.87 -0.16 0.75 16 13 H 0.07 1.01 7.82 -51.93 -0.41 0.61 16 14 C -0.14 -1.76 8.85 37.16 0.33 -1.43 16 15 N -0.49 -9.82 4.80 -223.88 -1.07 -10.90 16 16 C 0.03 0.63 5.09 -1.90 -0.01 0.62 16 17 C -0.12 -2.78 5.49 -24.87 -0.14 -2.91 16 18 C 0.24 6.24 0.99 -90.41 -0.09 6.15 16 19 O -0.60 -15.85 12.93 -35.23 -0.46 -16.31 16 20 C -0.52 -14.65 8.10 -34.44 -0.28 -14.93 16 21 H 0.06 1.78 7.34 -52.49 -0.39 1.40 16 22 C 0.07 1.82 5.26 -17.82 -0.09 1.73 16 23 N -0.90 -24.57 10.88 55.43 0.60 -23.96 16 24 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 C 0.06 1.38 5.23 -2.75 -0.01 1.36 16 29 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.05 0.30 7.67 -51.93 -0.40 -0.10 16 32 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 33 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.16 2.58 5.79 -52.48 -0.30 2.28 16 36 H 0.41 4.44 7.71 -40.82 -0.31 4.12 16 37 H 0.06 0.56 7.59 -51.93 -0.39 0.16 16 38 H 0.07 0.87 6.53 -51.93 -0.34 0.53 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.17 7.56 -51.93 -0.39 0.78 16 41 H 0.03 0.64 8.01 -51.93 -0.42 0.22 16 42 H 0.07 1.59 8.05 -51.93 -0.42 1.17 16 43 H 0.07 1.73 7.86 -51.93 -0.41 1.33 16 44 H 0.38 10.33 7.05 45.56 0.32 10.65 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.03 0.68 7.39 -51.93 -0.38 0.30 16 47 H 0.09 2.24 6.63 -51.93 -0.34 1.90 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -31.71 373.38 -8.47 -40.18 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -6.14 Total: 15.59 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.83 Total: -4.38 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.52 Total: -43.90 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.58 Total: -29.56 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.71 -8.47 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.138 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds