Wall clock time and date at job start Tue Mar 31 2020 18:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35973 * 116.99665 * 2 1 4 4 C 1.38554 * 120.08246 * 359.97438 * 3 2 1 5 5 C 1.38248 * 120.01101 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.18405 * 359.97438 * 5 4 3 7 7 C 1.38197 * 120.15925 * 0.02562 * 6 5 4 8 8 C 1.38722 * 119.98846 * 359.97438 * 7 6 5 9 9 N 1.40121 * 120.09023 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00133 * 24.79789 * 9 8 7 11 11 O 1.21291 * 119.99935 * 5.55488 * 10 9 8 12 12 C 1.50699 * 120.00066 * 185.56410 * 10 9 8 13 13 H 1.09006 * 109.47067 * 59.99349 * 12 10 9 14 14 C 1.52997 * 109.46924 * 299.99671 * 12 10 9 15 15 N 1.46896 * 109.47250 * 179.97438 * 12 10 9 16 16 C 1.48533 * 111.00230 * 172.77851 * 15 12 10 17 17 C 1.54941 * 103.22452 * 159.71980 * 16 15 12 18 18 C 1.54595 * 102.92292 * 322.58846 * 17 16 15 19 19 O 1.42898 * 110.30767 * 263.03671 * 18 17 16 20 20 C 1.50707 * 110.30523 * 140.87535 * 18 17 16 21 21 H 1.07999 * 119.99454 * 244.28620 * 20 18 17 22 22 C 1.37870 * 120.00195 * 64.28046 * 20 18 17 23 23 N 1.31522 * 120.00047 * 0.02562 * 22 20 18 24 24 Si 1.86796 * 120.00219 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47215 * 59.99727 * 24 22 20 26 26 H 1.48497 * 109.47361 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46968 * 300.00497 * 24 22 20 28 28 C 1.47904 * 110.99816 * 290.17941 * 15 12 10 29 29 H 1.09001 * 109.47313 * 60.00861 * 1 2 3 30 30 H 1.09010 * 109.46923 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47641 * 300.00221 * 1 2 3 32 32 H 1.07998 * 119.99431 * 359.95572 * 4 3 2 33 33 H 1.08007 * 119.90860 * 179.72461 * 5 4 3 34 34 H 1.07990 * 119.91860 * 179.97438 * 6 5 4 35 35 H 1.08004 * 120.00409 * 180.02562 * 7 6 5 36 36 H 0.97001 * 119.99737 * 204.79564 * 9 8 7 37 37 H 1.09003 * 109.47335 * 64.94115 * 14 12 10 38 38 H 1.09001 * 109.47194 * 184.93842 * 14 12 10 39 39 H 1.09000 * 109.47180 * 304.94122 * 14 12 10 40 40 H 1.08998 * 110.66630 * 278.15769 * 16 15 12 41 41 H 1.09004 * 110.66152 * 41.28784 * 16 15 12 42 42 H 1.09001 * 110.72101 * 204.22944 * 17 16 15 43 43 H 1.09004 * 110.71923 * 80.94761 * 17 16 15 44 44 H 0.96697 * 114.00455 * 295.71965 * 19 18 17 45 45 H 0.97004 * 119.99604 * 180.02562 * 23 22 20 46 46 H 1.08996 * 109.91931 * 333.50574 * 28 15 12 47 47 H 1.09004 * 109.91669 * 94.80614 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2932 2.3746 -0.0005 5 6 1.9223 3.6057 0.0000 6 6 3.3031 3.6808 0.0016 7 6 4.0613 2.5254 0.0021 8 6 3.4372 1.2865 0.0016 9 7 4.2039 0.1137 0.0027 10 6 5.4590 0.1295 0.4937 11 8 5.8894 1.1308 1.0259 12 6 6.3275 -1.0969 0.3814 13 1 6.4591 -1.3539 -0.6698 14 6 5.6595 -2.2635 1.1118 15 7 7.6383 -0.8258 0.9865 16 6 8.4608 -2.0609 1.0506 17 6 9.9049 -1.5181 1.1940 18 6 9.8951 -0.2656 0.2878 19 8 10.4302 -0.5805 -0.9992 20 6 10.6853 0.8478 0.9258 21 1 10.1896 1.7601 1.2231 22 6 12.0409 0.7017 1.1301 23 7 12.6446 -0.4091 0.7677 24 14 13.0205 2.0821 1.9203 25 1 12.4812 2.3587 3.2760 26 1 14.4459 1.6795 2.0267 27 1 12.9132 3.3058 1.0858 28 6 8.4123 0.1322 0.1675 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2146 2.3195 -0.0017 33 1 1.3337 4.5112 -0.0049 34 1 3.7900 4.6447 0.0016 35 1 5.1396 2.5871 0.0038 36 1 3.8314 -0.7096 -0.3499 37 1 4.7278 -2.5218 0.6084 38 1 6.3266 -3.1256 1.1061 39 1 5.4482 -1.9745 2.1413 40 1 8.1872 -2.6607 1.9186 41 1 8.3569 -2.6402 0.1331 42 1 10.6292 -2.2489 0.8342 43 1 10.1130 -1.2442 2.2284 44 1 11.3620 -0.8385 -0.9855 45 1 13.5984 -0.5120 0.9118 46 1 8.0949 0.0718 -0.8735 47 1 8.2677 1.1446 0.5445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592144962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:42 Heat of formation + Delta-G solvation = -98.669631 kcal Electronic energy + Delta-G solvation = -29509.778406 eV Core-core repulsion = 25464.471947 eV Total energy + Delta-G solvation = -4045.306459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.96382 -40.77575 -39.68498 -38.18526 -36.83395 -35.86192 -34.14081 -33.48477 -31.17294 -30.65534 -30.14367 -29.30775 -28.04337 -26.27957 -25.63676 -23.69085 -23.13622 -21.97379 -21.30360 -20.91993 -19.49146 -19.13843 -18.30850 -18.12094 -16.97967 -16.92622 -16.83770 -16.64070 -16.38311 -15.98019 -15.84749 -15.70551 -15.34599 -14.96921 -14.66983 -14.34973 -14.09765 -13.90422 -13.80834 -13.60383 -13.32184 -13.17755 -13.03413 -12.89941 -12.71674 -12.55663 -12.54924 -12.39616 -12.30416 -12.17679 -12.04742 -11.98772 -11.87758 -11.52917 -11.09629 -10.66751 -10.61362 -10.10858 -9.59011 -9.34882 -8.78995 -8.22920 -6.35605 0.24778 0.40852 1.39396 1.40107 1.48670 1.57918 1.87060 2.31169 2.38539 2.82166 2.93151 3.09078 3.55107 3.87169 3.91936 3.93168 4.01291 4.07717 4.24875 4.28258 4.36419 4.41772 4.45972 4.46746 4.49556 4.52191 4.57159 4.69279 4.78907 4.80973 4.81703 4.87641 5.12520 5.15123 5.19564 5.25683 5.30135 5.40263 5.47899 5.59409 5.61448 5.75479 5.81666 5.95962 6.03643 6.17354 6.40809 6.44701 6.66964 7.13521 7.33862 7.44770 8.82995 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.002922 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.704074 B = 9580.459781 C =10746.239711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.093 3.907 4 C -0.185 4.185 5 C -0.097 4.097 6 C -0.144 4.144 7 C -0.124 4.124 8 C 0.102 3.898 9 N -0.653 5.653 10 C 0.516 3.484 11 O -0.537 6.537 12 C 0.055 3.945 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.504 5.504 16 C 0.046 3.954 17 C -0.111 4.111 18 C 0.228 3.772 19 O -0.601 6.601 20 C -0.556 4.556 21 H 0.043 0.957 22 C 0.030 3.970 23 N -0.912 5.912 24 Si 0.958 3.042 25 H -0.276 1.276 26 H -0.274 1.274 27 H -0.277 1.277 28 C 0.075 3.925 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.163 0.837 33 H 0.157 0.843 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.424 0.576 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.379 0.621 45 H 0.271 0.729 46 H 0.025 0.975 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.335 -2.493 -2.677 26.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.046 3.954 4 C -0.204 4.204 5 C -0.116 4.116 6 C -0.163 4.163 7 C -0.144 4.144 8 C 0.007 3.993 9 N -0.299 5.299 10 C 0.303 3.697 11 O -0.413 6.413 12 C -0.057 4.057 13 H 0.096 0.904 14 C -0.194 4.194 15 N -0.229 5.229 16 C -0.081 4.081 17 C -0.150 4.150 18 C 0.188 3.812 19 O -0.411 6.411 20 C -0.594 4.594 21 H 0.061 0.939 22 C -0.170 4.170 23 N -0.552 5.552 24 Si 0.783 3.217 25 H -0.201 1.201 26 H -0.199 1.199 27 H -0.202 1.202 28 C -0.053 4.053 29 H 0.087 0.913 30 H 0.137 0.863 31 H 0.082 0.918 32 H 0.181 0.819 33 H 0.175 0.825 34 H 0.154 0.846 35 H 0.138 0.862 36 H 0.262 0.738 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.229 0.771 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.441 -1.778 -1.979 26.574 hybrid contribution 1.501 0.278 -0.386 1.574 sum -24.940 -1.499 -2.364 25.097 Atomic orbital electron populations 1.23364 0.75988 1.05693 1.02383 1.85981 1.23744 1.25807 1.89078 1.18719 0.89579 0.86279 1.00840 1.21420 1.01279 0.91032 1.06708 1.21291 0.93880 0.98409 0.97976 1.21224 0.94767 0.97925 1.02362 1.21285 1.01035 0.91472 1.00634 1.17345 0.87988 0.87140 1.06841 1.43234 1.13541 1.11813 1.61330 1.21029 0.81854 0.90036 0.76745 1.90678 1.73214 1.35213 1.42159 1.21919 0.90523 0.93628 0.99659 0.90385 1.21877 1.01489 0.95312 1.00682 1.64587 1.01261 1.09785 1.47263 1.23282 0.92478 0.91257 1.01056 1.22760 0.94702 0.97830 0.99743 1.19581 0.89167 0.91856 0.80588 1.86065 1.31525 1.90704 1.32769 1.21879 0.94364 1.02425 1.40775 0.93882 1.25640 0.98269 0.97994 0.95076 1.69672 1.11116 1.26210 1.48178 0.85628 0.77667 0.79545 0.78858 1.20121 1.19858 1.20232 1.22558 0.92709 0.96546 0.93473 0.91328 0.86252 0.91774 0.81934 0.82533 0.84583 0.86191 0.73769 0.88603 0.89691 0.92107 0.88413 0.93043 0.92471 0.93620 0.77058 0.91987 0.95649 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -5.89 9.91 -93.25 -0.92 -6.81 16 3 C 0.09 2.03 6.70 22.60 0.15 2.18 16 4 C -0.19 -3.16 9.04 22.35 0.20 -2.96 16 5 C -0.10 -1.74 10.04 22.28 0.22 -1.51 16 6 C -0.14 -3.45 10.04 22.27 0.22 -3.23 16 7 C -0.12 -3.81 8.72 22.38 0.20 -3.61 16 8 C 0.10 2.84 6.45 38.19 0.25 3.09 16 9 N -0.65 -17.50 5.22 -303.13 -1.58 -19.08 16 10 C 0.52 17.45 6.76 87.66 0.59 18.05 16 11 O -0.54 -23.16 12.25 -3.06 -0.04 -23.19 16 12 C 0.05 1.71 2.28 44.17 0.10 1.81 16 13 H 0.08 2.28 7.82 -2.38 -0.02 2.26 16 14 C -0.14 -2.99 8.85 71.98 0.64 -2.35 16 15 N -0.50 -20.37 4.80 -862.23 -4.14 -24.51 16 16 C 0.05 1.73 5.09 86.65 0.44 2.17 16 17 C -0.11 -5.34 5.49 31.80 0.17 -5.16 16 18 C 0.23 12.14 0.99 -10.66 -0.01 12.13 16 19 O -0.60 -32.94 12.93 -148.98 -1.93 -34.87 16 20 C -0.56 -32.52 8.10 25.60 0.21 -32.32 16 21 H 0.04 2.61 7.34 -2.91 -0.02 2.59 16 22 C 0.03 1.69 5.26 84.65 0.45 2.13 16 23 N -0.91 -50.32 10.88 21.45 0.23 -50.08 16 24 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 28 C 0.08 3.66 5.23 86.45 0.45 4.11 16 29 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 30 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.06 0.45 7.67 -2.39 -0.02 0.43 16 32 H 0.16 1.60 6.30 -2.91 -0.02 1.58 16 33 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 34 H 0.14 2.84 8.06 -2.92 -0.02 2.82 16 35 H 0.12 4.50 5.79 -2.91 -0.02 4.48 16 36 H 0.42 8.59 7.71 -92.71 -0.72 7.87 16 37 H 0.10 1.42 7.59 -2.39 -0.02 1.41 16 38 H 0.08 1.70 6.53 -2.39 -0.02 1.69 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.10 3.12 7.56 -2.39 -0.02 3.10 16 41 H 0.05 1.78 8.01 -2.38 -0.02 1.76 16 42 H 0.06 2.79 8.05 -2.39 -0.02 2.77 16 43 H 0.04 2.35 7.86 -2.38 -0.02 2.33 16 44 H 0.38 21.01 7.05 -74.06 -0.52 20.49 16 45 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 46 H 0.03 1.22 7.39 -2.39 -0.02 1.20 16 47 H 0.06 3.21 6.63 -2.38 -0.02 3.19 16 Total: -1.00 -73.12 373.38 -1.18 -74.30 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -0.23 Total: 41.55 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 5.40 Total: -4.20 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -5.49 Total: -93.67 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: -2.89 Total: -64.87 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -73.12 -1.18 -74.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.370 kcal (2) G-P(sol) polarization free energy of solvation -73.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds