Wall clock time and date at job start Tue Mar 31 2020 18:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35972 * 117.00207 * 2 1 4 4 C 1.38555 * 120.08431 * 0.02562 * 3 2 1 5 5 C 1.38236 * 120.01688 * 179.97438 * 4 3 2 6 6 C 1.38283 * 120.17921 * 0.02562 * 5 4 3 7 7 C 1.38199 * 120.16375 * 359.72311 * 6 5 4 8 8 C 1.38720 * 119.98181 * 0.54779 * 7 6 5 9 9 N 1.40134 * 120.08838 * 179.72289 * 8 7 6 10 10 C 1.34778 * 119.99858 * 335.19586 * 9 8 7 11 11 O 1.21291 * 120.00091 * 354.46754 * 10 9 8 12 12 C 1.50700 * 119.99736 * 174.46009 * 10 9 8 13 13 H 1.09002 * 109.46542 * 60.00835 * 12 10 9 14 14 C 1.52997 * 109.47291 * 300.00836 * 12 10 9 15 15 N 1.46898 * 109.47105 * 180.02562 * 12 10 9 16 16 C 1.47845 * 110.99868 * 300.13061 * 15 12 10 17 17 C 1.54905 * 104.79437 * 213.63443 * 16 15 12 18 18 C 1.55137 * 101.65513 * 37.07269 * 17 16 15 19 19 O 1.42899 * 110.85930 * 82.79606 * 18 17 16 20 20 C 1.50697 * 110.70883 * 205.96431 * 18 17 16 21 21 H 1.08003 * 119.99978 * 113.59344 * 20 18 17 22 22 C 1.37874 * 119.99938 * 293.59761 * 20 18 17 23 23 N 1.31517 * 119.99989 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 120.00104 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46929 * 89.99891 * 24 22 20 26 26 H 1.48499 * 109.47276 * 209.99894 * 24 22 20 27 27 H 1.48498 * 109.47200 * 330.00208 * 24 22 20 28 28 C 1.47437 * 111.00018 * 179.28820 * 15 12 10 29 29 H 1.08994 * 109.47217 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46768 * 300.00499 * 1 2 3 31 31 H 1.09002 * 109.46756 * 59.99892 * 1 2 3 32 32 H 1.08002 * 119.99177 * 359.95899 * 4 3 2 33 33 H 1.08003 * 119.91175 * 179.97438 * 5 4 3 34 34 H 1.08003 * 119.91582 * 180.02562 * 6 5 4 35 35 H 1.07995 * 120.00684 * 180.30405 * 7 6 5 36 36 H 0.96998 * 119.99483 * 155.19751 * 9 8 7 37 37 H 1.08999 * 109.46829 * 299.99501 * 14 12 10 38 38 H 1.08992 * 109.47338 * 59.99918 * 14 12 10 39 39 H 1.09002 * 109.46907 * 179.97438 * 14 12 10 40 40 H 1.09002 * 110.37869 * 332.46107 * 16 15 12 41 41 H 1.09000 * 110.37628 * 94.80494 * 16 15 12 42 42 H 1.09000 * 110.99375 * 155.16141 * 17 16 15 43 43 H 1.09001 * 110.99421 * 278.97799 * 17 16 15 44 44 H 0.96699 * 114.00125 * 66.31885 * 19 18 17 45 45 H 0.96998 * 119.99614 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.89072 * 242.66275 * 28 15 12 47 47 H 1.08994 * 109.88927 * 3.85106 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9225 3.6056 0.0011 6 6 3.3033 3.6806 0.0005 7 6 4.0615 2.5252 0.0052 8 6 3.4373 1.2864 -0.0010 9 7 4.2040 0.1134 -0.0021 10 6 5.4613 0.1306 -0.4873 11 8 5.8944 1.1336 -1.0141 12 6 6.3290 -1.0964 -0.3751 13 1 5.8553 -1.9256 -0.9006 14 6 6.5068 -1.4623 1.0998 15 7 7.6426 -0.8235 -0.9733 16 6 7.5100 -0.4625 -2.4009 17 6 8.7828 -1.0343 -3.0735 18 6 8.9778 -2.3629 -2.2966 19 8 8.1526 -3.3956 -2.8395 20 6 10.4260 -2.7795 -2.3083 21 1 10.9922 -2.7905 -1.3887 22 6 11.0282 -3.1464 -3.4931 23 7 10.3387 -3.1333 -4.6129 24 14 12.8236 -3.6620 -3.5078 25 1 12.9192 -5.1284 -3.2931 26 1 13.4281 -3.3132 -4.8185 27 1 13.5507 -2.9546 -2.4233 28 6 8.5263 -1.9989 -0.8665 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2148 2.3196 0.0003 33 1 1.3340 4.5112 0.0011 34 1 3.7904 4.6446 0.0014 35 1 5.1397 2.5867 0.0098 36 1 3.8297 -0.7109 0.3463 37 1 6.9805 -0.6331 1.6252 38 1 5.5323 -1.6647 1.5440 39 1 7.1341 -2.3500 1.1808 40 1 6.6173 -0.9205 -2.8269 41 1 7.4737 0.6208 -2.5166 42 1 8.6131 -1.2232 -4.1335 43 1 9.6337 -0.3687 -2.9284 44 1 8.3945 -3.6613 -3.7372 45 1 10.7623 -3.3918 -5.4463 46 1 9.3947 -1.7556 -0.2542 47 1 7.9814 -2.8337 -0.4259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592144969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:45 Heat of formation + Delta-G solvation = -75.626864 kcal Electronic energy + Delta-G solvation = -29453.590144 eV Core-core repulsion = 25409.282894 eV Total energy + Delta-G solvation = -4044.307250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.93685 -39.68613 -38.16133 -37.25926 -34.93494 -34.72974 -32.08333 -32.02841 -30.33105 -29.69379 -28.23297 -27.68697 -27.38097 -25.16412 -23.84120 -22.53689 -22.10788 -20.54255 -19.83856 -19.15294 -18.53792 -17.46868 -17.20863 -16.80790 -16.16746 -15.88900 -15.54157 -15.19867 -14.88132 -14.77114 -14.44428 -14.12245 -13.94055 -13.71662 -13.34816 -13.12394 -12.94428 -12.75246 -12.42032 -12.23493 -11.86785 -11.80836 -11.65630 -11.53345 -11.38534 -11.31322 -11.22642 -11.15378 -10.88088 -10.53593 -10.51209 -10.41767 -10.25213 -9.87619 -9.35768 -9.24271 -8.70831 -8.59063 -8.05180 -7.88171 -7.61402 -6.18715 -4.25543 1.15584 1.26673 2.73920 2.88866 3.08419 3.24772 3.31895 3.35581 3.70537 4.32609 4.54654 4.59768 4.70997 4.73830 4.84762 4.89376 5.07510 5.09891 5.19061 5.21872 5.28716 5.40327 5.46412 5.66557 5.70578 5.76475 5.91014 5.98715 6.11678 6.17787 6.19492 6.27905 6.34291 6.36518 6.45925 6.48298 6.69129 6.72742 6.97119 7.17177 7.17757 7.37945 7.46173 7.53666 7.68701 7.74887 7.85849 8.15649 8.27270 8.75560 9.41940 9.53812 10.88642 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.002538 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.613958 B =11031.171137 C =11323.620898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.090 3.910 4 C -0.189 4.189 5 C -0.107 4.107 6 C -0.133 4.133 7 C -0.098 4.098 8 C 0.133 3.867 9 N -0.668 5.668 10 C 0.521 3.479 11 O -0.499 6.499 12 C 0.062 3.938 13 H 0.069 0.931 14 C -0.142 4.142 15 N -0.508 5.508 16 C 0.048 3.952 17 C -0.132 4.132 18 C 0.235 3.765 19 O -0.594 6.594 20 C -0.530 4.530 21 H 0.062 0.938 22 C 0.069 3.931 23 N -0.899 5.899 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 C 0.058 3.942 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.155 0.845 36 H 0.413 0.587 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.384 0.616 45 H 0.267 0.733 46 H 0.082 0.918 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.294 8.086 10.396 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.234 6.234 3 C 0.043 3.957 4 C -0.208 4.208 5 C -0.126 4.126 6 C -0.151 4.151 7 C -0.119 4.119 8 C 0.038 3.962 9 N -0.314 5.314 10 C 0.308 3.692 11 O -0.371 6.371 12 C -0.050 4.050 13 H 0.087 0.913 14 C -0.200 4.200 15 N -0.233 5.233 16 C -0.079 4.079 17 C -0.171 4.171 18 C 0.195 3.805 19 O -0.404 6.404 20 C -0.568 4.568 21 H 0.081 0.919 22 C -0.133 4.133 23 N -0.540 5.540 24 Si 0.729 3.271 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.197 1.197 28 C -0.069 4.069 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.172 0.828 36 H 0.249 0.751 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.236 0.764 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.876 8.993 10.685 23.481 hybrid contribution 0.278 -1.276 -1.028 1.662 sum -18.598 7.718 9.657 22.332 Atomic orbital electron populations 1.23026 0.78224 1.03918 1.01253 1.86006 1.21492 1.26570 1.89333 1.18696 0.90392 0.84984 1.01637 1.20995 0.99663 0.91869 1.08308 1.20893 0.94719 0.96817 1.00173 1.21016 0.93583 0.98306 1.02235 1.21398 1.02190 0.89638 0.98631 1.17191 0.86745 0.87572 1.04729 1.43497 1.14265 1.11134 1.62470 1.20941 0.80825 0.90710 0.76676 1.90635 1.72224 1.33878 1.40393 1.21720 0.91940 0.93293 0.98075 0.91347 1.21857 1.01962 1.03128 0.93014 1.63647 1.07605 1.35139 1.16941 1.23088 0.98227 1.00335 0.86237 1.23189 0.94886 0.98877 1.00128 1.19725 0.88899 0.84368 0.87543 1.86048 1.59759 1.57827 1.36753 1.21598 0.95567 1.45339 0.94336 0.91930 1.25013 0.98557 0.94415 0.95300 1.69595 1.37015 1.48535 0.98822 0.86452 0.84356 0.78863 0.77479 1.20570 1.21141 1.19746 1.22919 0.95672 0.89490 0.98832 0.88228 0.92735 0.92683 0.85359 0.85909 0.85571 0.82763 0.75150 0.91298 0.92367 0.90633 0.95308 0.90496 0.90995 0.91745 0.76424 0.92313 0.89950 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.36 9.91 -19.65 -0.19 -3.56 16 3 C 0.09 1.05 6.70 -39.07 -0.26 0.79 16 4 C -0.19 -1.85 9.04 -39.47 -0.36 -2.21 16 5 C -0.11 -1.03 10.04 -39.57 -0.40 -1.43 16 6 C -0.13 -1.47 10.04 -39.58 -0.40 -1.86 16 7 C -0.10 -1.33 8.72 -39.42 -0.34 -1.68 16 8 C 0.13 1.79 6.45 -83.49 -0.54 1.25 16 9 N -0.67 -8.90 5.14 -9.74 -0.05 -8.95 16 10 C 0.52 8.40 6.69 -10.98 -0.07 8.33 16 11 O -0.50 -9.45 11.50 5.55 0.06 -9.38 16 12 C 0.06 1.02 2.08 -68.87 -0.14 0.88 16 13 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 14 C -0.14 -1.86 8.95 37.16 0.33 -1.53 16 15 N -0.51 -10.15 4.83 -224.68 -1.08 -11.23 16 16 C 0.05 1.04 5.34 -2.30 -0.01 1.03 16 17 C -0.13 -3.19 5.67 -24.60 -0.14 -3.33 16 18 C 0.24 5.87 0.85 -89.95 -0.08 5.80 16 19 O -0.59 -15.48 13.09 -35.23 -0.46 -15.94 16 20 C -0.53 -14.24 8.21 -34.44 -0.28 -14.52 16 21 H 0.06 1.66 7.53 -52.48 -0.40 1.27 16 22 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 23 N -0.90 -24.27 10.69 55.43 0.59 -23.68 16 24 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 C 0.06 1.25 5.49 -2.84 -0.02 1.23 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.28 7.66 -51.92 -0.40 -0.12 16 31 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 32 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 33 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.15 2.35 5.79 -52.49 -0.30 2.05 16 36 H 0.41 4.57 7.94 -40.82 -0.32 4.25 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.59 7.70 -51.93 -0.40 0.19 16 39 H 0.07 1.01 6.46 -51.93 -0.34 0.68 16 40 H 0.03 0.63 7.77 -51.93 -0.40 0.23 16 41 H 0.08 1.68 6.97 -51.93 -0.36 1.32 16 42 H 0.07 1.83 7.76 -51.93 -0.40 1.43 16 43 H 0.06 1.60 8.04 -51.93 -0.42 1.19 16 44 H 0.38 10.31 6.98 45.56 0.32 10.62 16 45 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.08 1.77 7.63 -51.93 -0.40 1.38 16 47 H 0.05 1.04 6.22 -51.93 -0.32 0.72 16 LS Contribution 372.60 15.07 5.61 5.61 Total: -1.00 -30.57 372.60 -8.47 -39.04 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -6.12 Total: 16.61 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.81 Total: -4.31 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.54 Total: -43.85 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.59 Total: -28.88 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.57 -8.47 -39.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.592 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds