Wall clock time and date at job start Tue Mar 31 2020 18:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35972 * 117.00207 * 2 1 4 4 C 1.38555 * 120.08431 * 0.02562 * 3 2 1 5 5 C 1.38236 * 120.01688 * 179.97438 * 4 3 2 6 6 C 1.38283 * 120.17921 * 0.02562 * 5 4 3 7 7 C 1.38199 * 120.16375 * 359.72311 * 6 5 4 8 8 C 1.38720 * 119.98181 * 0.54779 * 7 6 5 9 9 N 1.40134 * 120.08838 * 179.72289 * 8 7 6 10 10 C 1.34778 * 119.99858 * 335.19586 * 9 8 7 11 11 O 1.21291 * 120.00091 * 354.46754 * 10 9 8 12 12 C 1.50700 * 119.99736 * 174.46009 * 10 9 8 13 13 H 1.09002 * 109.46542 * 60.00835 * 12 10 9 14 14 C 1.52997 * 109.47291 * 300.00836 * 12 10 9 15 15 N 1.46898 * 109.47105 * 180.02562 * 12 10 9 16 16 C 1.47845 * 110.99868 * 300.13061 * 15 12 10 17 17 C 1.54905 * 104.79437 * 213.63443 * 16 15 12 18 18 C 1.55137 * 101.65513 * 37.07269 * 17 16 15 19 19 O 1.42899 * 110.85930 * 82.79606 * 18 17 16 20 20 C 1.50697 * 110.70883 * 205.96431 * 18 17 16 21 21 H 1.08003 * 119.99978 * 113.59344 * 20 18 17 22 22 C 1.37874 * 119.99938 * 293.59761 * 20 18 17 23 23 N 1.31517 * 119.99989 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 120.00104 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46929 * 89.99891 * 24 22 20 26 26 H 1.48499 * 109.47276 * 209.99894 * 24 22 20 27 27 H 1.48498 * 109.47200 * 330.00208 * 24 22 20 28 28 C 1.47437 * 111.00018 * 179.28820 * 15 12 10 29 29 H 1.08994 * 109.47217 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46768 * 300.00499 * 1 2 3 31 31 H 1.09002 * 109.46756 * 59.99892 * 1 2 3 32 32 H 1.08002 * 119.99177 * 359.95899 * 4 3 2 33 33 H 1.08003 * 119.91175 * 179.97438 * 5 4 3 34 34 H 1.08003 * 119.91582 * 180.02562 * 6 5 4 35 35 H 1.07995 * 120.00684 * 180.30405 * 7 6 5 36 36 H 0.96998 * 119.99483 * 155.19751 * 9 8 7 37 37 H 1.08999 * 109.46829 * 299.99501 * 14 12 10 38 38 H 1.08992 * 109.47338 * 59.99918 * 14 12 10 39 39 H 1.09002 * 109.46907 * 179.97438 * 14 12 10 40 40 H 1.09002 * 110.37869 * 332.46107 * 16 15 12 41 41 H 1.09000 * 110.37628 * 94.80494 * 16 15 12 42 42 H 1.09000 * 110.99375 * 155.16141 * 17 16 15 43 43 H 1.09001 * 110.99421 * 278.97799 * 17 16 15 44 44 H 0.96699 * 114.00125 * 66.31885 * 19 18 17 45 45 H 0.96998 * 119.99614 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.89072 * 242.66275 * 28 15 12 47 47 H 1.08994 * 109.88927 * 3.85106 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9225 3.6056 0.0011 6 6 3.3033 3.6806 0.0005 7 6 4.0615 2.5252 0.0052 8 6 3.4373 1.2864 -0.0010 9 7 4.2040 0.1134 -0.0021 10 6 5.4613 0.1306 -0.4873 11 8 5.8944 1.1336 -1.0141 12 6 6.3290 -1.0964 -0.3751 13 1 5.8553 -1.9256 -0.9006 14 6 6.5068 -1.4623 1.0998 15 7 7.6426 -0.8235 -0.9733 16 6 7.5100 -0.4625 -2.4009 17 6 8.7828 -1.0343 -3.0735 18 6 8.9778 -2.3629 -2.2966 19 8 8.1526 -3.3956 -2.8395 20 6 10.4260 -2.7795 -2.3083 21 1 10.9922 -2.7905 -1.3887 22 6 11.0282 -3.1464 -3.4931 23 7 10.3387 -3.1333 -4.6129 24 14 12.8236 -3.6620 -3.5078 25 1 12.9192 -5.1284 -3.2931 26 1 13.4281 -3.3132 -4.8185 27 1 13.5507 -2.9546 -2.4233 28 6 8.5263 -1.9989 -0.8665 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2148 2.3196 0.0003 33 1 1.3340 4.5112 0.0011 34 1 3.7904 4.6446 0.0014 35 1 5.1397 2.5867 0.0098 36 1 3.8297 -0.7109 0.3463 37 1 6.9805 -0.6331 1.6252 38 1 5.5323 -1.6647 1.5440 39 1 7.1341 -2.3500 1.1808 40 1 6.6173 -0.9205 -2.8269 41 1 7.4737 0.6208 -2.5166 42 1 8.6131 -1.2232 -4.1335 43 1 9.6337 -0.3687 -2.9284 44 1 8.3945 -3.6613 -3.7372 45 1 10.7623 -3.3918 -5.4463 46 1 9.3947 -1.7556 -0.2542 47 1 7.9814 -2.8337 -0.4259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592144969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:44 Heat of formation + Delta-G solvation = -98.272357 kcal Electronic energy + Delta-G solvation = -29454.572126 eV Core-core repulsion = 25409.282894 eV Total energy + Delta-G solvation = -4045.289232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.99051 -40.81118 -39.67411 -38.18087 -36.66209 -35.87138 -34.11674 -33.57913 -31.17595 -30.67656 -30.07138 -29.18775 -28.05647 -26.88359 -25.18485 -23.53603 -23.10582 -22.20026 -21.32198 -20.75628 -19.45691 -19.15810 -18.38632 -18.08315 -17.10206 -17.05316 -16.90625 -16.63102 -16.23656 -15.89176 -15.82470 -15.64195 -15.25680 -14.79674 -14.76040 -14.43395 -14.28171 -13.89293 -13.74368 -13.52435 -13.32213 -13.11731 -13.00553 -12.94029 -12.76937 -12.66503 -12.53511 -12.36860 -12.25913 -12.16353 -12.02469 -12.00496 -11.85591 -11.54524 -11.16548 -10.64650 -10.60758 -10.08120 -9.58254 -9.26571 -8.78491 -8.21533 -6.36143 0.25633 0.42388 1.41602 1.43282 1.53233 1.55476 1.85972 2.31779 2.39511 2.83625 3.02042 3.04949 3.55596 3.84474 3.89184 3.98511 4.01845 4.11079 4.26610 4.31957 4.37743 4.40492 4.43411 4.43676 4.48212 4.55232 4.57981 4.70517 4.77425 4.80316 4.88618 4.91011 5.09475 5.13950 5.21178 5.28745 5.31688 5.47300 5.48806 5.51815 5.60635 5.80222 5.83739 5.91096 6.06186 6.16618 6.40126 6.42366 6.68525 7.09510 7.34139 7.42685 8.84220 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.002538 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.613958 B =11031.171137 C =11323.620898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.089 3.911 4 C -0.187 4.187 5 C -0.098 4.098 6 C -0.142 4.142 7 C -0.118 4.118 8 C 0.100 3.900 9 N -0.653 5.653 10 C 0.522 3.478 11 O -0.535 6.535 12 C 0.059 3.941 13 H 0.068 0.932 14 C -0.135 4.135 15 N -0.511 5.511 16 C 0.065 3.935 17 C -0.126 4.126 18 C 0.221 3.779 19 O -0.597 6.597 20 C -0.554 4.554 21 H 0.060 0.940 22 C 0.026 3.974 23 N -0.917 5.917 24 Si 0.963 3.037 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.270 1.270 28 C 0.068 3.932 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.141 0.859 35 H 0.129 0.871 36 H 0.423 0.577 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.022 0.978 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.377 0.623 45 H 0.269 0.731 46 H 0.082 0.918 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.374 8.348 11.750 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.042 3.958 4 C -0.206 4.206 5 C -0.116 4.116 6 C -0.161 4.161 7 C -0.139 4.139 8 C 0.006 3.994 9 N -0.299 5.299 10 C 0.309 3.691 11 O -0.410 6.410 12 C -0.053 4.053 13 H 0.085 0.915 14 C -0.192 4.192 15 N -0.236 5.236 16 C -0.062 4.062 17 C -0.165 4.165 18 C 0.181 3.819 19 O -0.407 6.407 20 C -0.592 4.592 21 H 0.078 0.922 22 C -0.174 4.174 23 N -0.558 5.558 24 Si 0.788 3.212 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.059 4.059 29 H 0.134 0.866 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.177 0.823 33 H 0.174 0.826 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.260 0.740 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.041 0.959 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.228 0.772 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.007 9.246 12.072 25.933 hybrid contribution 0.766 -1.318 -1.444 2.100 sum -20.241 7.928 10.629 24.197 Atomic orbital electron populations 1.23345 0.76042 1.05559 1.02412 1.85988 1.23748 1.26154 1.89129 1.18798 0.89843 0.86175 1.01024 1.21403 1.01195 0.91149 1.06867 1.21300 0.94179 0.98183 0.97960 1.21254 0.94546 0.98104 1.02155 1.21316 1.01330 0.90981 1.00257 1.17393 0.87814 0.87248 1.06986 1.43240 1.13250 1.11846 1.61561 1.20827 0.81630 0.90001 0.76595 1.90629 1.73164 1.34940 1.42289 1.21853 0.90127 0.93511 0.99819 0.91458 1.21851 1.03978 1.02827 0.90580 1.63585 1.09787 1.34528 1.15673 1.22833 0.96446 0.99757 0.87181 1.23022 0.95588 0.98744 0.99109 1.19953 0.88496 0.84080 0.89395 1.86040 1.60017 1.58305 1.36308 1.21878 0.96679 1.46112 0.94548 0.92163 1.25742 1.02369 0.94333 0.94973 1.69687 1.38343 1.48590 0.99150 0.85484 0.79716 0.78526 0.77437 1.20043 1.20854 1.19433 1.22766 0.96175 0.90305 0.96666 0.86553 0.91095 0.91868 0.82260 0.82586 0.84108 0.85312 0.73964 0.91572 0.88964 0.90662 0.95915 0.90918 0.93027 0.93153 0.77194 0.92173 0.89998 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.36 9.91 -93.23 -0.92 -7.28 16 3 C 0.09 1.92 6.70 22.60 0.15 2.07 16 4 C -0.19 -3.09 9.04 22.34 0.20 -2.89 16 5 C -0.10 -1.59 10.04 22.28 0.22 -1.37 16 6 C -0.14 -2.99 10.04 22.27 0.22 -2.76 16 7 C -0.12 -3.26 8.72 22.38 0.20 -3.06 16 8 C 0.10 2.67 6.45 38.18 0.25 2.91 16 9 N -0.65 -17.21 5.14 -303.12 -1.56 -18.77 16 10 C 0.52 17.02 6.69 87.66 0.59 17.61 16 11 O -0.53 -21.00 11.50 -3.06 -0.04 -21.03 16 12 C 0.06 1.92 2.08 44.17 0.09 2.01 16 13 H 0.07 2.23 8.09 -2.39 -0.02 2.21 16 14 C -0.13 -3.35 8.95 71.98 0.64 -2.70 16 15 N -0.51 -20.63 4.83 -864.77 -4.17 -24.80 16 16 C 0.07 2.91 5.34 86.77 0.46 3.38 16 17 C -0.13 -6.29 5.67 31.98 0.18 -6.11 16 18 C 0.22 11.26 0.85 -10.36 -0.01 11.25 16 19 O -0.60 -31.71 13.09 -148.98 -1.95 -33.66 16 20 C -0.55 -30.14 8.21 25.60 0.21 -29.93 16 21 H 0.06 3.22 7.53 -2.91 -0.02 3.20 16 22 C 0.03 1.37 5.28 84.65 0.45 1.82 16 23 N -0.92 -50.27 10.69 21.45 0.23 -50.04 16 24 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 C 0.07 2.95 5.49 86.65 0.48 3.43 16 29 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.47 7.66 -2.38 -0.02 0.45 16 31 H 0.06 0.52 7.66 -2.39 -0.02 0.50 16 32 H 0.16 1.58 6.30 -2.91 -0.02 1.56 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.13 4.17 5.79 -2.91 -0.02 4.15 16 36 H 0.42 8.94 7.94 -92.71 -0.74 8.21 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 1.65 7.70 -2.39 -0.02 1.63 16 39 H 0.07 1.89 6.46 -2.39 -0.02 1.87 16 40 H 0.02 1.02 7.77 -2.39 -0.02 1.00 16 41 H 0.07 3.30 6.97 -2.39 -0.02 3.29 16 42 H 0.05 2.74 7.76 -2.39 -0.02 2.72 16 43 H 0.05 2.60 8.04 -2.39 -0.02 2.59 16 44 H 0.38 20.81 6.98 -74.06 -0.52 20.29 16 45 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.08 3.54 7.63 -2.39 -0.02 3.52 16 47 H 0.06 2.50 6.22 -2.39 -0.01 2.48 16 Total: -1.00 -67.40 372.60 -1.18 -68.59 By element: Atomic # 1 Polarization: 45.45 SS G_CDS: -0.24 Total: 45.21 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 5.45 Total: -3.05 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -5.50 Total: -93.61 kcal Atomic # 8 Polarization: -59.06 SS G_CDS: -2.91 Total: -61.97 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -67.40 -1.18 -68.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.687 kcal (2) G-P(sol) polarization free energy of solvation -67.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds