Wall clock time and date at job start Tue Mar 31 2020 18:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35975 * 116.99594 * 2 1 4 4 C 1.38548 * 120.08285 * 359.97438 * 3 2 1 5 5 C 1.38249 * 120.01180 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.17693 * 0.02562 * 5 4 3 7 7 C 1.38191 * 120.16510 * 0.27713 * 6 5 4 8 8 C 1.38722 * 119.98810 * 359.43101 * 7 6 5 9 9 N 1.40120 * 120.09254 * 180.27523 * 8 7 6 10 10 C 1.34776 * 120.00062 * 24.68633 * 9 8 7 11 11 O 1.21296 * 120.00210 * 5.86229 * 10 9 8 12 12 C 1.50703 * 120.00099 * 185.86346 * 10 9 8 13 13 H 1.09000 * 109.46676 * 300.00099 * 12 10 9 14 14 C 1.52998 * 109.47300 * 59.99371 * 12 10 9 15 15 N 1.46892 * 109.47088 * 179.97438 * 12 10 9 16 16 C 1.47848 * 110.99878 * 176.80252 * 15 12 10 17 17 C 1.54906 * 104.79622 * 213.63656 * 16 15 12 18 18 C 1.55140 * 101.65407 * 37.06785 * 17 16 15 19 19 O 1.42898 * 110.85290 * 82.80107 * 18 17 16 20 20 C 1.50697 * 110.70681 * 205.96499 * 18 17 16 21 21 H 1.07999 * 120.00203 * 113.60187 * 20 18 17 22 22 C 1.37879 * 119.99931 * 293.60130 * 20 18 17 23 23 N 1.31511 * 120.00129 * 359.97438 * 22 20 18 24 24 Si 1.86804 * 119.99950 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47000 * 59.99550 * 24 22 20 26 26 H 1.48498 * 109.47053 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46809 * 299.99729 * 24 22 20 28 28 C 1.47447 * 111.00391 * 55.96172 * 15 12 10 29 29 H 1.09003 * 109.47044 * 60.00421 * 1 2 3 30 30 H 1.09004 * 109.47007 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47088 * 300.00248 * 1 2 3 32 32 H 1.07998 * 119.99627 * 359.97438 * 4 3 2 33 33 H 1.07993 * 119.91163 * 180.02562 * 5 4 3 34 34 H 1.08004 * 119.91229 * 179.97438 * 6 5 4 35 35 H 1.08004 * 120.00415 * 179.70162 * 7 6 5 36 36 H 0.97002 * 119.99554 * 204.68745 * 9 8 7 37 37 H 1.09006 * 109.47491 * 305.01743 * 14 12 10 38 38 H 1.09007 * 109.47057 * 65.01418 * 14 12 10 39 39 H 1.09001 * 109.47374 * 185.01395 * 14 12 10 40 40 H 1.09005 * 110.37109 * 332.46391 * 16 15 12 41 41 H 1.09000 * 110.37413 * 94.80561 * 16 15 12 42 42 H 1.08995 * 110.98903 * 278.97824 * 17 16 15 43 43 H 1.09002 * 110.99197 * 155.16152 * 17 16 15 44 44 H 0.96695 * 114.00542 * 66.31615 * 19 18 17 45 45 H 0.97004 * 120.00306 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.88336 * 242.66297 * 28 15 12 47 47 H 1.09003 * 109.88385 * 3.68498 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2932 2.3746 -0.0005 5 6 1.9223 3.6057 0.0000 6 6 3.3031 3.6807 0.0005 7 6 4.0613 2.5254 -0.0052 8 6 3.4372 1.2864 0.0003 9 7 4.2039 0.1136 0.0003 10 6 5.4622 0.1310 0.4829 11 8 5.8944 1.1324 1.0137 12 6 6.3323 -1.0936 0.3629 13 1 5.8614 -1.9263 0.8852 14 6 6.5077 -1.4519 -1.1142 15 7 7.6466 -0.8208 0.9595 16 6 8.5029 -2.0257 0.9286 17 6 9.3591 -1.9357 2.2163 18 6 8.3425 -1.3441 3.2279 19 8 7.5145 -2.3713 3.7767 20 6 9.0558 -0.5950 4.3238 21 1 8.9392 0.4752 4.4108 22 6 9.8572 -1.2759 5.2155 23 7 9.9988 -2.5791 5.1100 24 14 10.7409 -0.3474 6.5745 25 1 9.7433 0.3350 7.4373 26 1 11.5319 -1.3016 7.3924 27 1 11.6493 0.6623 5.9742 28 6 7.5099 -0.3779 2.3593 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2147 2.3195 -0.0014 33 1 1.3338 4.5112 0.0000 34 1 3.7901 4.6447 0.0005 35 1 5.1396 2.5870 -0.0097 36 1 3.8290 -0.7108 -0.3470 37 1 5.5285 -1.5670 -1.5790 38 1 7.0578 -0.6570 -1.6180 39 1 7.0618 -2.3868 -1.1980 40 1 7.8901 -2.9271 0.9425 41 1 9.1425 -2.0141 0.0460 42 1 10.2060 -1.2641 2.0759 43 1 9.6943 -2.9236 2.5322 44 1 7.9895 -3.0052 4.3311 45 1 10.5630 -3.0581 5.7371 46 1 7.8904 0.6379 2.4655 47 1 6.4625 -0.4147 2.6591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592144971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:51 Heat of formation + Delta-G solvation = -75.449973 kcal Electronic energy + Delta-G solvation = -29655.882516 eV Core-core repulsion = 25611.582936 eV Total energy + Delta-G solvation = -4044.299579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90506 -39.67383 -38.10995 -37.20276 -34.93899 -34.70366 -32.03652 -31.96952 -30.27590 -29.62283 -28.37795 -27.72484 -27.39178 -24.37631 -24.33303 -22.61372 -22.14981 -20.40953 -19.70456 -19.42079 -18.46129 -17.36437 -17.10755 -16.80091 -16.11924 -15.81913 -15.40800 -15.14179 -14.84561 -14.77853 -14.39481 -14.21571 -13.95990 -13.73095 -13.53615 -13.09836 -12.82679 -12.41129 -12.31710 -12.26494 -11.87513 -11.80522 -11.66889 -11.59401 -11.38578 -11.30966 -11.19723 -11.12968 -10.83447 -10.58534 -10.48551 -10.41437 -10.24218 -9.87503 -9.36610 -9.13654 -8.65227 -8.55030 -8.04668 -7.82816 -7.63295 -6.15636 -4.21472 1.20811 1.31936 2.78775 2.93065 3.12527 3.29806 3.33291 3.37898 3.75926 4.35879 4.54246 4.63442 4.74873 4.75961 4.88538 4.93809 5.10810 5.14270 5.20326 5.23006 5.33797 5.39895 5.50534 5.63174 5.74947 5.77643 5.86800 6.02083 6.10123 6.15652 6.17385 6.21694 6.32957 6.41196 6.50065 6.54408 6.59459 6.74582 7.09242 7.16059 7.22038 7.41218 7.46509 7.54973 7.68936 7.76293 7.88879 8.22690 8.31265 8.80156 9.45795 9.57614 10.91738 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.002966 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.269346 B = 9438.668009 C =10001.862753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.090 3.910 4 C -0.189 4.189 5 C -0.107 4.107 6 C -0.132 4.132 7 C -0.098 4.098 8 C 0.134 3.866 9 N -0.668 5.668 10 C 0.519 3.481 11 O -0.494 6.494 12 C 0.062 3.938 13 H 0.069 0.931 14 C -0.138 4.138 15 N -0.510 5.510 16 C 0.043 3.957 17 C -0.131 4.131 18 C 0.232 3.768 19 O -0.594 6.594 20 C -0.528 4.528 21 H 0.062 0.938 22 C 0.069 3.931 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.275 1.275 28 C 0.074 3.926 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.155 0.845 36 H 0.412 0.588 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.383 0.617 45 H 0.267 0.733 46 H 0.085 0.915 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.658 3.948 -14.284 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.234 6.234 3 C 0.043 3.957 4 C -0.208 4.208 5 C -0.126 4.126 6 C -0.151 4.151 7 C -0.118 4.118 8 C 0.038 3.962 9 N -0.314 5.314 10 C 0.307 3.693 11 O -0.366 6.366 12 C -0.051 4.051 13 H 0.086 0.914 14 C -0.196 4.196 15 N -0.235 5.235 16 C -0.084 4.084 17 C -0.170 4.170 18 C 0.191 3.809 19 O -0.404 6.404 20 C -0.566 4.566 21 H 0.080 0.920 22 C -0.132 4.132 23 N -0.543 5.543 24 Si 0.728 3.272 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.052 4.052 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.172 0.828 36 H 0.248 0.752 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.234 0.766 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.328 4.990 -14.440 22.361 hybrid contribution -0.001 -0.815 1.443 1.657 sum -16.329 4.176 -12.997 21.284 Atomic orbital electron populations 1.23020 0.78269 1.03874 1.01249 1.86004 1.21459 1.26585 1.89358 1.18688 0.90387 0.84971 1.01691 1.20990 0.99636 0.91871 1.08332 1.20890 0.94720 0.96805 1.00213 1.21012 0.93579 0.98314 1.02179 1.21394 1.02197 0.89642 0.98592 1.17180 0.86737 0.87556 1.04685 1.43467 1.14158 1.11102 1.62653 1.20862 0.80952 0.90687 0.76821 1.90683 1.72297 1.33851 1.39778 1.21728 0.91856 0.93629 0.97852 0.91365 1.21788 1.01827 1.02859 0.93148 1.63682 1.08719 1.31124 1.19993 1.23097 0.95420 0.90164 0.99727 1.23166 0.98500 1.01974 0.93332 1.19818 0.86036 0.84800 0.90195 1.86070 1.40882 1.43580 1.69835 1.21600 1.27372 0.94693 1.12965 0.91955 1.25001 0.95707 0.95028 0.97510 1.69579 1.40032 1.06871 1.37794 0.86513 0.79568 0.79546 0.81550 1.20131 1.21243 1.20058 1.22769 0.99014 0.99305 0.84161 0.92763 0.88269 0.92673 0.85375 0.85923 0.85560 0.82768 0.75222 0.92392 0.91173 0.91238 0.94371 0.91754 0.91665 0.90806 0.76569 0.92330 0.89651 0.93971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.52 9.91 -19.66 -0.19 -3.72 16 3 C 0.09 1.10 6.70 -39.07 -0.26 0.84 16 4 C -0.19 -1.96 9.04 -39.46 -0.36 -2.32 16 5 C -0.11 -1.10 10.04 -39.56 -0.40 -1.50 16 6 C -0.13 -1.55 10.04 -39.58 -0.40 -1.95 16 7 C -0.10 -1.40 8.72 -39.42 -0.34 -1.74 16 8 C 0.13 1.89 6.45 -83.49 -0.54 1.35 16 9 N -0.67 -9.27 5.09 -9.75 -0.05 -9.32 16 10 C 0.52 8.75 6.28 -10.98 -0.07 8.68 16 11 O -0.49 -9.94 11.61 5.54 0.06 -9.88 16 12 C 0.06 1.01 2.15 -68.87 -0.15 0.87 16 13 H 0.07 1.15 8.01 -51.93 -0.42 0.73 16 14 C -0.14 -1.71 9.00 37.16 0.33 -1.38 16 15 N -0.51 -10.18 4.87 -224.68 -1.09 -11.27 16 16 C 0.04 0.84 5.58 -2.30 -0.01 0.83 16 17 C -0.13 -3.06 5.67 -24.59 -0.14 -3.20 16 18 C 0.23 5.97 0.85 -89.95 -0.08 5.89 16 19 O -0.59 -15.87 13.09 -35.23 -0.46 -16.33 16 20 C -0.53 -14.75 8.21 -34.44 -0.28 -15.03 16 21 H 0.06 1.76 7.53 -52.49 -0.40 1.36 16 22 C 0.07 1.87 5.28 -17.82 -0.09 1.78 16 23 N -0.90 -24.51 10.69 55.43 0.59 -23.92 16 24 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 C 0.07 1.76 4.49 -2.84 -0.01 1.75 16 29 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 32 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 35 H 0.15 2.47 5.79 -52.48 -0.30 2.16 16 36 H 0.41 4.70 7.89 -40.82 -0.32 4.38 16 37 H 0.06 0.56 7.56 -51.93 -0.39 0.17 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.81 7.44 -51.93 -0.39 0.43 16 40 H 0.04 0.72 7.70 -51.93 -0.40 0.32 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.58 8.04 -51.93 -0.42 1.16 16 43 H 0.07 1.80 7.76 -51.93 -0.40 1.40 16 44 H 0.38 10.39 6.98 45.56 0.32 10.71 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.09 2.15 7.49 -51.93 -0.39 1.76 16 47 H 0.04 1.04 6.57 -51.93 -0.34 0.70 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -31.43 373.69 -8.56 -39.99 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -6.22 Total: 16.43 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.80 Total: -3.93 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.55 Total: -44.51 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.59 Total: -29.92 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.43 -8.56 -39.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.457 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds