Wall clock time and date at job start Tue Mar 31 2020 18:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35975 * 116.99594 * 2 1 4 4 C 1.38548 * 120.08285 * 359.97438 * 3 2 1 5 5 C 1.38249 * 120.01180 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.17693 * 0.02562 * 5 4 3 7 7 C 1.38191 * 120.16510 * 0.27713 * 6 5 4 8 8 C 1.38722 * 119.98810 * 359.43101 * 7 6 5 9 9 N 1.40120 * 120.09254 * 180.27523 * 8 7 6 10 10 C 1.34776 * 120.00062 * 24.68633 * 9 8 7 11 11 O 1.21296 * 120.00210 * 5.86229 * 10 9 8 12 12 C 1.50703 * 120.00099 * 185.86346 * 10 9 8 13 13 H 1.09000 * 109.46676 * 300.00099 * 12 10 9 14 14 C 1.52998 * 109.47300 * 59.99371 * 12 10 9 15 15 N 1.46892 * 109.47088 * 179.97438 * 12 10 9 16 16 C 1.47848 * 110.99878 * 176.80252 * 15 12 10 17 17 C 1.54906 * 104.79622 * 213.63656 * 16 15 12 18 18 C 1.55140 * 101.65407 * 37.06785 * 17 16 15 19 19 O 1.42898 * 110.85290 * 82.80107 * 18 17 16 20 20 C 1.50697 * 110.70681 * 205.96499 * 18 17 16 21 21 H 1.07999 * 120.00203 * 113.60187 * 20 18 17 22 22 C 1.37879 * 119.99931 * 293.60130 * 20 18 17 23 23 N 1.31511 * 120.00129 * 359.97438 * 22 20 18 24 24 Si 1.86804 * 119.99950 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47000 * 59.99550 * 24 22 20 26 26 H 1.48498 * 109.47053 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46809 * 299.99729 * 24 22 20 28 28 C 1.47447 * 111.00391 * 55.96172 * 15 12 10 29 29 H 1.09003 * 109.47044 * 60.00421 * 1 2 3 30 30 H 1.09004 * 109.47007 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47088 * 300.00248 * 1 2 3 32 32 H 1.07998 * 119.99627 * 359.97438 * 4 3 2 33 33 H 1.07993 * 119.91163 * 180.02562 * 5 4 3 34 34 H 1.08004 * 119.91229 * 179.97438 * 6 5 4 35 35 H 1.08004 * 120.00415 * 179.70162 * 7 6 5 36 36 H 0.97002 * 119.99554 * 204.68745 * 9 8 7 37 37 H 1.09006 * 109.47491 * 305.01743 * 14 12 10 38 38 H 1.09007 * 109.47057 * 65.01418 * 14 12 10 39 39 H 1.09001 * 109.47374 * 185.01395 * 14 12 10 40 40 H 1.09005 * 110.37109 * 332.46391 * 16 15 12 41 41 H 1.09000 * 110.37413 * 94.80561 * 16 15 12 42 42 H 1.08995 * 110.98903 * 278.97824 * 17 16 15 43 43 H 1.09002 * 110.99197 * 155.16152 * 17 16 15 44 44 H 0.96695 * 114.00542 * 66.31615 * 19 18 17 45 45 H 0.97004 * 120.00306 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.88336 * 242.66297 * 28 15 12 47 47 H 1.09003 * 109.88385 * 3.68498 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2932 2.3746 -0.0005 5 6 1.9223 3.6057 0.0000 6 6 3.3031 3.6807 0.0005 7 6 4.0613 2.5254 -0.0052 8 6 3.4372 1.2864 0.0003 9 7 4.2039 0.1136 0.0003 10 6 5.4622 0.1310 0.4829 11 8 5.8944 1.1324 1.0137 12 6 6.3323 -1.0936 0.3629 13 1 5.8614 -1.9263 0.8852 14 6 6.5077 -1.4519 -1.1142 15 7 7.6466 -0.8208 0.9595 16 6 8.5029 -2.0257 0.9286 17 6 9.3591 -1.9357 2.2163 18 6 8.3425 -1.3441 3.2279 19 8 7.5145 -2.3713 3.7767 20 6 9.0558 -0.5950 4.3238 21 1 8.9392 0.4752 4.4108 22 6 9.8572 -1.2759 5.2155 23 7 9.9988 -2.5791 5.1100 24 14 10.7409 -0.3474 6.5745 25 1 9.7433 0.3350 7.4373 26 1 11.5319 -1.3016 7.3924 27 1 11.6493 0.6623 5.9742 28 6 7.5099 -0.3779 2.3593 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2147 2.3195 -0.0014 33 1 1.3338 4.5112 0.0000 34 1 3.7901 4.6447 0.0005 35 1 5.1396 2.5870 -0.0097 36 1 3.8290 -0.7108 -0.3470 37 1 5.5285 -1.5670 -1.5790 38 1 7.0578 -0.6570 -1.6180 39 1 7.0618 -2.3868 -1.1980 40 1 7.8901 -2.9271 0.9425 41 1 9.1425 -2.0141 0.0460 42 1 10.2060 -1.2641 2.0759 43 1 9.6943 -2.9236 2.5322 44 1 7.9895 -3.0052 4.3311 45 1 10.5630 -3.0581 5.7371 46 1 7.8904 0.6379 2.4655 47 1 6.4625 -0.4147 2.6591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592144971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:50 Heat of formation + Delta-G solvation = -99.360411 kcal Electronic energy + Delta-G solvation = -29656.919350 eV Core-core repulsion = 25611.582936 eV Total energy + Delta-G solvation = -4045.336414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.01694 -40.82914 -39.64107 -38.18386 -36.71004 -35.88798 -34.14920 -33.49412 -31.17478 -30.66434 -30.08199 -29.41677 -28.06727 -26.32576 -25.56195 -23.65614 -23.12218 -21.90805 -21.49999 -20.87374 -19.41159 -19.16724 -18.31965 -18.09593 -17.08499 -16.93472 -16.88589 -16.61361 -16.35267 -16.02936 -15.80314 -15.63123 -15.43957 -14.86871 -14.68482 -14.35218 -14.06800 -13.84723 -13.73760 -13.55527 -13.31553 -13.24751 -13.10127 -12.95817 -12.71590 -12.57377 -12.54345 -12.46941 -12.31098 -12.19414 -12.02553 -12.01236 -11.82630 -11.56089 -11.17912 -10.67046 -10.58207 -10.11030 -9.58614 -9.27626 -8.79095 -8.24393 -6.38618 0.24998 0.41545 1.39102 1.39985 1.48358 1.55713 1.87144 2.31195 2.37072 2.83003 2.97674 3.04750 3.54579 3.86597 3.89987 3.97448 4.01224 4.12558 4.26399 4.28348 4.38405 4.40631 4.43478 4.47370 4.50194 4.56411 4.58423 4.71563 4.76984 4.81257 4.84084 4.89972 5.12889 5.18248 5.21451 5.29080 5.30422 5.45972 5.49113 5.54481 5.59793 5.78749 5.82862 5.91261 6.06308 6.18475 6.39863 6.42296 6.63808 7.09843 7.31626 7.42871 8.80982 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.002966 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.269346 B = 9438.668009 C =10001.862753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.089 3.911 4 C -0.187 4.187 5 C -0.098 4.098 6 C -0.143 4.143 7 C -0.120 4.120 8 C 0.100 3.900 9 N -0.653 5.653 10 C 0.516 3.484 11 O -0.537 6.537 12 C 0.059 3.941 13 H 0.068 0.932 14 C -0.129 4.129 15 N -0.513 5.513 16 C 0.054 3.946 17 C -0.124 4.124 18 C 0.218 3.782 19 O -0.599 6.599 20 C -0.562 4.562 21 H 0.046 0.954 22 C 0.032 3.968 23 N -0.912 5.912 24 Si 0.959 3.041 25 H -0.278 1.278 26 H -0.274 1.274 27 H -0.272 1.272 28 C 0.093 3.907 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.423 0.577 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.378 0.622 45 H 0.271 0.729 46 H 0.059 0.941 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.630 3.787 -15.561 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.041 3.959 4 C -0.206 4.206 5 C -0.116 4.116 6 C -0.161 4.161 7 C -0.140 4.140 8 C 0.005 3.995 9 N -0.299 5.299 10 C 0.304 3.696 11 O -0.413 6.413 12 C -0.053 4.053 13 H 0.086 0.914 14 C -0.187 4.187 15 N -0.238 5.238 16 C -0.072 4.072 17 C -0.163 4.163 18 C 0.178 3.822 19 O -0.408 6.408 20 C -0.601 4.601 21 H 0.064 0.936 22 C -0.168 4.168 23 N -0.552 5.552 24 Si 0.785 3.215 25 H -0.203 1.203 26 H -0.199 1.199 27 H -0.198 1.198 28 C -0.035 4.035 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.179 0.821 33 H 0.175 0.825 34 H 0.158 0.842 35 H 0.145 0.855 36 H 0.261 0.739 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.229 0.771 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -18.344 4.804 -15.755 24.654 hybrid contribution 0.462 -0.746 1.831 2.030 sum -17.882 4.059 -13.924 23.024 Atomic orbital electron populations 1.23350 0.76021 1.05593 1.02408 1.85987 1.23772 1.26084 1.89131 1.18791 0.89803 0.86225 1.01033 1.21409 1.01218 0.91114 1.06830 1.21302 0.94112 0.98235 0.97981 1.21250 0.94610 0.98064 1.02193 1.21307 1.01271 0.91091 1.00327 1.17396 0.87885 0.87277 1.06913 1.43226 1.13145 1.11801 1.61705 1.20986 0.81850 0.90247 0.76538 1.90676 1.73379 1.35292 1.41958 1.21887 0.89890 0.93345 1.00155 0.91412 1.21789 1.03905 1.03132 0.89877 1.63625 1.11175 1.31692 1.17356 1.23064 0.95146 0.90310 0.98722 1.22957 0.97999 1.00491 0.94851 1.20016 0.86828 0.84921 0.90480 1.86056 1.41248 1.43664 1.69870 1.21823 1.29018 0.94322 1.14906 0.93602 1.25654 0.96016 0.95947 0.99206 1.69640 1.39845 1.07516 1.38159 0.85598 0.78439 0.78587 0.78913 1.20329 1.19909 1.19764 1.22376 0.97103 0.97665 0.86309 0.90983 0.86475 0.91993 0.82147 0.82518 0.84164 0.85505 0.73902 0.89308 0.91613 0.89875 0.93250 0.88703 0.93111 0.92028 0.77117 0.91914 0.92302 0.95797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.75 9.91 -93.27 -0.92 -7.67 16 3 C 0.09 2.06 6.70 22.60 0.15 2.21 16 4 C -0.19 -3.36 9.04 22.35 0.20 -3.16 16 5 C -0.10 -1.75 10.04 22.28 0.22 -1.53 16 6 C -0.14 -3.28 10.04 22.27 0.22 -3.06 16 7 C -0.12 -3.55 8.72 22.37 0.20 -3.36 16 8 C 0.10 2.85 6.45 38.19 0.25 3.10 16 9 N -0.65 -18.27 5.09 -303.13 -1.54 -19.81 16 10 C 0.52 17.93 6.28 87.66 0.55 18.48 16 11 O -0.54 -23.05 11.61 -3.08 -0.04 -23.08 16 12 C 0.06 1.93 2.15 44.17 0.10 2.03 16 13 H 0.07 2.24 8.01 -2.39 -0.02 2.22 16 14 C -0.13 -2.95 9.00 71.98 0.65 -2.30 16 15 N -0.51 -20.76 4.87 -864.75 -4.21 -24.97 16 16 C 0.05 2.07 5.58 86.77 0.48 2.56 16 17 C -0.12 -5.91 5.67 31.98 0.18 -5.73 16 18 C 0.22 11.60 0.85 -10.36 -0.01 11.59 16 19 O -0.60 -32.89 13.09 -148.98 -1.95 -34.84 16 20 C -0.56 -32.63 8.21 25.60 0.21 -32.42 16 21 H 0.05 2.73 7.53 -2.91 -0.02 2.71 16 22 C 0.03 1.77 5.28 84.66 0.45 2.22 16 23 N -0.91 -49.97 10.69 21.45 0.23 -49.74 16 24 Si 0.96 44.24 29.54 68.60 2.03 46.26 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 28 C 0.09 4.64 4.49 86.64 0.39 5.03 16 29 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 30 H 0.12 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 32 H 0.16 1.78 6.30 -2.91 -0.02 1.76 16 33 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.13 4.43 5.79 -2.91 -0.02 4.41 16 36 H 0.42 9.36 7.89 -92.71 -0.73 8.63 16 37 H 0.09 1.48 7.56 -2.38 -0.02 1.46 16 38 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.08 1.69 7.44 -2.39 -0.02 1.67 16 40 H 0.05 1.78 7.70 -2.38 -0.02 1.76 16 41 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.05 2.51 8.04 -2.39 -0.02 2.49 16 43 H 0.06 3.04 7.76 -2.39 -0.02 3.02 16 44 H 0.38 21.05 6.98 -74.06 -0.52 20.54 16 45 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 46 H 0.06 3.19 7.49 -2.39 -0.02 3.17 16 47 H 0.02 1.24 6.57 -2.39 -0.02 1.22 16 Total: -1.00 -71.43 373.69 -1.30 -72.73 By element: Atomic # 1 Polarization: 44.38 SS G_CDS: -0.24 Total: 44.14 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 5.35 Total: -3.01 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -5.52 Total: -94.52 kcal Atomic # 8 Polarization: -62.68 SS G_CDS: -2.91 Total: -65.59 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -71.43 -1.30 -72.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.631 kcal (2) G-P(sol) polarization free energy of solvation -71.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds