Wall clock time and date at job start Tue Mar 31 2020 18:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35976 * 117.00100 * 2 1 4 4 C 1.38718 * 119.98781 * 179.97438 * 3 2 1 5 5 C 1.38085 * 120.01723 * 180.02562 * 4 3 2 6 6 C 1.38845 * 119.98597 * 0.02592 * 5 4 3 7 7 N 1.40108 * 120.01594 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99709 * 146.75532 * 7 6 5 9 9 O 1.21292 * 120.00246 * 354.79580 * 8 7 6 10 10 C 1.50699 * 119.99769 * 175.07155 * 8 7 6 11 11 H 1.08999 * 109.47210 * 59.72208 * 10 8 7 12 12 C 1.53011 * 109.46851 * 299.72532 * 10 8 7 13 13 N 1.46900 * 109.47453 * 179.72786 * 10 8 7 14 14 C 1.48527 * 111.00205 * 175.34928 * 13 10 8 15 15 C 1.54937 * 103.22909 * 159.71745 * 14 13 10 16 16 C 1.54597 * 102.92118 * 322.58489 * 15 14 13 17 17 O 1.42901 * 110.39457 * 263.00062 * 16 15 14 18 18 C 1.50702 * 110.31267 * 140.87072 * 16 15 14 19 19 H 1.08000 * 119.99825 * 239.18147 * 18 16 15 20 20 C 1.37872 * 119.99521 * 59.17676 * 18 16 15 21 21 N 1.31515 * 120.00537 * 4.87483 * 20 18 16 22 22 Si 1.86806 * 119.99716 * 184.87333 * 20 18 16 23 23 H 1.48506 * 109.47058 * 94.99754 * 22 20 18 24 24 H 1.48504 * 109.46954 * 214.99298 * 22 20 18 25 25 H 1.48499 * 109.47317 * 334.99709 * 22 20 18 26 26 C 1.47902 * 110.99572 * 292.74395 * 13 10 8 27 27 C 1.38853 * 119.96859 * 0.24874 * 6 5 4 28 28 C 1.38090 * 119.98293 * 359.47521 * 27 6 5 29 29 H 1.08992 * 109.47267 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46940 * 300.00350 * 1 2 3 31 31 H 1.08997 * 109.46927 * 59.99527 * 1 2 3 32 32 H 1.08010 * 119.99123 * 0.02883 * 4 3 2 33 33 H 1.08000 * 120.00613 * 180.02562 * 5 4 3 34 34 H 0.96994 * 119.99872 * 326.75868 * 7 6 5 35 35 H 1.09004 * 109.46972 * 184.52721 * 12 10 8 36 36 H 1.09003 * 109.46779 * 304.52381 * 12 10 8 37 37 H 1.08995 * 109.46850 * 64.52394 * 12 10 8 38 38 H 1.09003 * 110.66726 * 278.15363 * 14 13 10 39 39 H 1.09005 * 110.66845 * 41.28041 * 14 13 10 40 40 H 1.08991 * 110.72429 * 204.22724 * 15 14 13 41 41 H 1.09002 * 110.72109 * 80.93774 * 15 14 13 42 42 H 0.96700 * 113.99449 * 295.76596 * 17 16 15 43 43 H 0.96999 * 120.00264 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.91542 * 333.51027 * 26 13 10 45 45 H 1.09003 * 109.91844 * 94.60113 * 26 13 10 46 46 H 1.08001 * 120.00568 * 179.74463 * 27 6 5 47 47 H 1.07997 * 119.99319 * 180.29476 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0592 2.5138 0.0011 6 6 3.3033 3.6785 0.0016 7 7 3.9394 4.9269 0.0027 8 6 3.3757 5.9709 -0.6367 9 8 2.3677 5.8086 -1.2915 10 6 4.0014 7.3387 -0.5431 11 1 5.0171 7.3013 -0.9366 12 6 4.0375 7.7839 0.9204 13 7 3.2076 8.2950 -1.3263 14 6 3.7301 9.6762 -1.1678 15 6 3.1615 10.4146 -2.4055 16 6 3.2454 9.3427 -3.5163 17 8 4.4316 9.5220 -4.2928 18 6 2.0272 9.4094 -4.4008 19 1 1.3859 8.5464 -4.5028 20 6 1.7313 10.5723 -5.0799 21 7 2.5616 11.5910 -5.0324 22 14 0.1508 10.7008 -6.0674 23 1 -0.9022 11.3372 -5.2357 24 1 0.3899 11.5253 -7.2792 25 1 -0.2919 9.3424 -6.4722 26 6 3.2924 7.9953 -2.7721 27 6 1.9167 3.6055 0.0068 28 6 1.2904 2.3748 0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 4.0195 0.3778 0.0005 33 1 5.1377 2.5699 0.0011 34 1 4.7854 5.0397 0.4635 35 1 4.4156 8.8045 0.9804 36 1 3.0311 7.7441 1.3372 37 1 4.6915 7.1202 1.4859 38 1 3.3574 10.1253 -0.2471 39 1 4.8200 9.6796 -1.1848 40 1 3.7772 11.2784 -2.6558 41 1 2.1271 10.7132 -2.2350 42 1 4.4580 10.3545 -4.7840 43 1 2.3536 12.4090 -5.5105 44 1 4.2292 7.4827 -2.9908 45 1 2.4498 7.3723 -3.0723 46 1 1.3282 4.5110 0.0114 47 1 0.2120 2.3178 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:54 Heat of formation + Delta-G solvation = -77.395353 kcal Electronic energy + Delta-G solvation = -29127.997949 eV Core-core repulsion = 25083.614011 eV Total energy + Delta-G solvation = -4044.383937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74999 -39.78392 -38.34114 -37.19575 -35.04965 -34.38992 -32.06122 -31.91115 -31.21703 -29.22157 -28.49091 -27.66409 -27.18374 -24.39007 -24.24720 -23.05461 -21.97102 -20.56897 -19.73058 -19.38502 -18.35276 -17.65637 -17.14120 -16.83348 -16.18413 -15.88889 -15.41188 -15.15122 -14.78099 -14.70291 -14.28852 -14.12662 -13.90324 -13.85628 -13.43164 -13.14915 -12.85894 -12.79128 -12.45279 -12.27141 -12.13511 -12.10481 -11.72459 -11.65470 -11.54949 -11.25284 -11.04524 -11.01011 -10.86317 -10.64121 -10.40705 -10.26159 -9.96250 -9.88334 -9.48695 -9.11217 -9.09927 -8.51255 -8.06832 -7.83032 -7.76371 -6.14396 -4.18965 1.16965 1.27123 2.73840 2.95540 3.13707 3.28801 3.35644 3.41581 3.69029 4.37279 4.44891 4.60376 4.72172 4.76649 4.90574 4.93655 5.06495 5.11976 5.15162 5.23175 5.24562 5.27593 5.44615 5.53543 5.70335 5.74752 5.78709 5.88781 5.99763 6.06788 6.12497 6.22965 6.25357 6.26481 6.34395 6.43588 6.53327 6.74976 7.03568 7.12165 7.23283 7.30744 7.33301 7.57587 7.64854 7.71769 7.89170 8.23809 8.29219 8.84058 9.45793 9.56231 10.93379 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.002803 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.026352 B = 9986.895292 C =11281.318411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.321 6.321 3 C 0.105 3.895 4 C -0.133 4.133 5 C -0.111 4.111 6 C 0.121 3.879 7 N -0.679 5.679 8 C 0.518 3.482 9 O -0.490 6.490 10 C 0.057 3.943 11 H 0.065 0.935 12 C -0.141 4.141 13 N -0.492 5.492 14 C 0.032 3.968 15 C -0.116 4.116 16 C 0.241 3.759 17 O -0.596 6.596 18 C -0.524 4.524 19 H 0.062 0.938 20 C 0.067 3.933 21 N -0.900 5.900 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.061 3.939 27 C -0.080 4.080 28 C -0.185 4.185 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.407 0.593 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.382 0.618 43 H 0.265 0.735 44 H 0.028 0.972 45 H 0.090 0.910 46 H 0.140 0.860 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.948 -15.798 14.952 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.059 3.941 4 C -0.152 4.152 5 C -0.131 4.131 6 C 0.026 3.974 7 N -0.326 5.326 8 C 0.304 3.696 9 O -0.360 6.360 10 C -0.056 4.056 11 H 0.083 0.917 12 C -0.199 4.199 13 N -0.217 5.217 14 C -0.095 4.095 15 C -0.155 4.155 16 C 0.202 3.798 17 O -0.406 6.406 18 C -0.562 4.562 19 H 0.081 0.919 20 C -0.134 4.134 21 N -0.541 5.541 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.066 4.066 27 C -0.101 4.101 28 C -0.205 4.205 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.243 0.757 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.233 0.767 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.108 0.892 46 H 0.158 0.842 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.908 -16.474 14.830 22.247 hybrid contribution 0.046 0.964 -0.857 1.290 sum 1.954 -15.510 13.973 20.967 Atomic orbital electron populations 1.23040 0.78488 1.03750 1.01517 1.86049 1.21302 1.26952 1.89126 1.18987 0.92332 0.84123 0.98623 1.20145 0.91287 0.97940 1.05816 1.20685 0.99666 0.90412 1.02343 1.17660 0.91909 0.84811 1.02971 1.43604 1.25806 1.08138 1.55086 1.20859 0.84913 0.85728 0.78068 1.90738 1.23881 1.84023 1.37405 1.21766 0.96124 0.90552 0.97165 0.91726 1.21828 1.02937 1.02311 0.92836 1.64732 1.48215 1.00811 1.07985 1.23351 0.96727 0.89081 1.00317 1.22949 1.00745 0.98483 0.93281 1.19405 0.83963 0.88432 0.88046 1.86094 1.43071 1.45685 1.65700 1.21710 1.08998 0.98488 1.27042 0.91932 1.25005 0.96984 0.95453 0.95949 1.69682 1.36260 1.04642 1.43490 0.86462 0.83335 0.78168 0.79357 1.20587 1.21242 1.19744 1.22902 1.00071 0.98594 0.85051 1.21023 0.93168 0.98218 0.97647 1.21144 1.00156 0.91740 1.07436 0.88385 0.92690 0.92539 0.84978 0.85055 0.75731 0.90880 0.91299 0.92221 0.91364 0.94715 0.91488 0.91281 0.76733 0.92490 0.95357 0.89154 0.84239 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.46 10.50 -19.67 -0.21 -3.66 16 3 C 0.10 1.22 6.69 -39.22 -0.26 0.96 16 4 C -0.13 -1.41 9.98 -39.46 -0.39 -1.81 16 5 C -0.11 -1.15 9.96 -39.41 -0.39 -1.55 16 6 C 0.12 1.51 6.28 -83.62 -0.53 0.99 16 7 N -0.68 -8.00 5.24 -9.83 -0.05 -8.06 16 8 C 0.52 8.11 6.67 -10.98 -0.07 8.04 16 9 O -0.49 -9.74 12.57 5.55 0.07 -9.67 16 10 C 0.06 0.86 2.23 -68.86 -0.15 0.70 16 11 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 12 C -0.14 -1.61 8.93 37.16 0.33 -1.28 16 13 N -0.49 -9.68 4.83 -223.88 -1.08 -10.76 16 14 C 0.03 0.62 5.21 -1.90 -0.01 0.61 16 15 C -0.12 -2.70 5.31 -24.87 -0.13 -2.83 16 16 C 0.24 6.19 0.99 -90.41 -0.09 6.10 16 17 O -0.60 -15.81 12.94 -35.23 -0.46 -16.27 16 18 C -0.52 -14.67 8.12 -34.44 -0.28 -14.95 16 19 H 0.06 1.80 7.36 -52.49 -0.39 1.41 16 20 C 0.07 1.84 5.22 -17.82 -0.09 1.74 16 21 N -0.90 -24.42 10.89 55.43 0.60 -23.82 16 22 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.06 1.42 5.12 -2.75 -0.01 1.40 16 27 C -0.08 -1.10 8.65 -39.41 -0.34 -1.44 16 28 C -0.19 -2.23 9.03 -39.46 -0.36 -2.58 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.41 3.32 8.50 -40.82 -0.35 2.97 16 35 H 0.07 0.81 6.60 -51.93 -0.34 0.47 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.48 7.84 -51.93 -0.41 0.08 16 38 H 0.07 1.14 7.56 -51.93 -0.39 0.75 16 39 H 0.03 0.63 8.02 -51.93 -0.42 0.21 16 40 H 0.07 1.60 7.99 -51.93 -0.41 1.19 16 41 H 0.07 1.73 7.86 -51.93 -0.41 1.32 16 42 H 0.38 10.22 7.29 45.56 0.33 10.55 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.03 0.65 7.43 -51.93 -0.39 0.27 16 45 H 0.09 2.30 6.51 -51.93 -0.34 1.96 16 46 H 0.14 2.13 6.42 -52.49 -0.34 1.80 16 47 H 0.13 1.31 6.29 -52.49 -0.33 0.98 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -32.30 375.62 -8.48 -40.78 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -6.21 Total: 14.08 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -1.79 Total: -4.71 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.53 Total: -42.64 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.59 Total: -29.60 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.30 -8.48 -40.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.611 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds