Wall clock time and date at job start Tue Mar 31 2020 18:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35976 * 117.00100 * 2 1 4 4 C 1.38718 * 119.98781 * 179.97438 * 3 2 1 5 5 C 1.38085 * 120.01723 * 180.02562 * 4 3 2 6 6 C 1.38845 * 119.98597 * 0.02592 * 5 4 3 7 7 N 1.40108 * 120.01594 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99709 * 146.75532 * 7 6 5 9 9 O 1.21292 * 120.00246 * 354.79580 * 8 7 6 10 10 C 1.50699 * 119.99769 * 175.07155 * 8 7 6 11 11 H 1.08999 * 109.47210 * 59.72208 * 10 8 7 12 12 C 1.53011 * 109.46851 * 299.72532 * 10 8 7 13 13 N 1.46900 * 109.47453 * 179.72786 * 10 8 7 14 14 C 1.48527 * 111.00205 * 175.34928 * 13 10 8 15 15 C 1.54937 * 103.22909 * 159.71745 * 14 13 10 16 16 C 1.54597 * 102.92118 * 322.58489 * 15 14 13 17 17 O 1.42901 * 110.39457 * 263.00062 * 16 15 14 18 18 C 1.50702 * 110.31267 * 140.87072 * 16 15 14 19 19 H 1.08000 * 119.99825 * 239.18147 * 18 16 15 20 20 C 1.37872 * 119.99521 * 59.17676 * 18 16 15 21 21 N 1.31515 * 120.00537 * 4.87483 * 20 18 16 22 22 Si 1.86806 * 119.99716 * 184.87333 * 20 18 16 23 23 H 1.48506 * 109.47058 * 94.99754 * 22 20 18 24 24 H 1.48504 * 109.46954 * 214.99298 * 22 20 18 25 25 H 1.48499 * 109.47317 * 334.99709 * 22 20 18 26 26 C 1.47902 * 110.99572 * 292.74395 * 13 10 8 27 27 C 1.38853 * 119.96859 * 0.24874 * 6 5 4 28 28 C 1.38090 * 119.98293 * 359.47521 * 27 6 5 29 29 H 1.08992 * 109.47267 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46940 * 300.00350 * 1 2 3 31 31 H 1.08997 * 109.46927 * 59.99527 * 1 2 3 32 32 H 1.08010 * 119.99123 * 0.02883 * 4 3 2 33 33 H 1.08000 * 120.00613 * 180.02562 * 5 4 3 34 34 H 0.96994 * 119.99872 * 326.75868 * 7 6 5 35 35 H 1.09004 * 109.46972 * 184.52721 * 12 10 8 36 36 H 1.09003 * 109.46779 * 304.52381 * 12 10 8 37 37 H 1.08995 * 109.46850 * 64.52394 * 12 10 8 38 38 H 1.09003 * 110.66726 * 278.15363 * 14 13 10 39 39 H 1.09005 * 110.66845 * 41.28041 * 14 13 10 40 40 H 1.08991 * 110.72429 * 204.22724 * 15 14 13 41 41 H 1.09002 * 110.72109 * 80.93774 * 15 14 13 42 42 H 0.96700 * 113.99449 * 295.76596 * 17 16 15 43 43 H 0.96999 * 120.00264 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.91542 * 333.51027 * 26 13 10 45 45 H 1.09003 * 109.91844 * 94.60113 * 26 13 10 46 46 H 1.08001 * 120.00568 * 179.74463 * 27 6 5 47 47 H 1.07997 * 119.99319 * 180.29476 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0592 2.5138 0.0011 6 6 3.3033 3.6785 0.0016 7 7 3.9394 4.9269 0.0027 8 6 3.3757 5.9709 -0.6367 9 8 2.3677 5.8086 -1.2915 10 6 4.0014 7.3387 -0.5431 11 1 5.0171 7.3013 -0.9366 12 6 4.0375 7.7839 0.9204 13 7 3.2076 8.2950 -1.3263 14 6 3.7301 9.6762 -1.1678 15 6 3.1615 10.4146 -2.4055 16 6 3.2454 9.3427 -3.5163 17 8 4.4316 9.5220 -4.2928 18 6 2.0272 9.4094 -4.4008 19 1 1.3859 8.5464 -4.5028 20 6 1.7313 10.5723 -5.0799 21 7 2.5616 11.5910 -5.0324 22 14 0.1508 10.7008 -6.0674 23 1 -0.9022 11.3372 -5.2357 24 1 0.3899 11.5253 -7.2792 25 1 -0.2919 9.3424 -6.4722 26 6 3.2924 7.9953 -2.7721 27 6 1.9167 3.6055 0.0068 28 6 1.2904 2.3748 0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 4.0195 0.3778 0.0005 33 1 5.1377 2.5699 0.0011 34 1 4.7854 5.0397 0.4635 35 1 4.4156 8.8045 0.9804 36 1 3.0311 7.7441 1.3372 37 1 4.6915 7.1202 1.4859 38 1 3.3574 10.1253 -0.2471 39 1 4.8200 9.6796 -1.1848 40 1 3.7772 11.2784 -2.6558 41 1 2.1271 10.7132 -2.2350 42 1 4.4580 10.3545 -4.7840 43 1 2.3536 12.4090 -5.5105 44 1 4.2292 7.4827 -2.9908 45 1 2.4498 7.3723 -3.0723 46 1 1.3282 4.5110 0.0114 47 1 0.2120 2.3178 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:53 Heat of formation + Delta-G solvation = -102.420755 kcal Electronic energy + Delta-G solvation = -29129.083132 eV Core-core repulsion = 25083.614011 eV Total energy + Delta-G solvation = -4045.469120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.82232 -40.81978 -39.82013 -38.28768 -36.77704 -35.48084 -34.18913 -33.35242 -32.10052 -30.25774 -30.09458 -29.28640 -27.97289 -26.28174 -25.45457 -24.00907 -22.99585 -21.96068 -21.32628 -20.94631 -19.22057 -19.12520 -18.63181 -18.11782 -17.15762 -16.92319 -16.89225 -16.62502 -16.31964 -15.90984 -15.81639 -15.56907 -15.23396 -14.76627 -14.63106 -14.29108 -14.03516 -13.91899 -13.81104 -13.70141 -13.60452 -13.31785 -13.07846 -13.00936 -12.82207 -12.70675 -12.55037 -12.43135 -12.32606 -12.28503 -12.03615 -11.89393 -11.84501 -11.08863 -10.98233 -10.69236 -10.59736 -10.11744 -10.01057 -9.33970 -8.71693 -8.23950 -6.36412 0.27606 0.34033 1.36919 1.38714 1.49542 1.59099 1.92746 2.37792 2.39543 2.78337 2.93904 3.09060 3.58430 3.84091 3.89324 3.94434 3.95470 4.11499 4.21774 4.26094 4.34978 4.36796 4.37423 4.46894 4.49409 4.52750 4.55709 4.71109 4.72336 4.84172 4.87280 4.90109 5.04755 5.16515 5.21914 5.27237 5.31151 5.35730 5.41065 5.44274 5.61121 5.75320 5.82090 5.95877 6.06631 6.18191 6.41386 6.49175 6.66754 7.18914 7.32447 7.43298 8.82011 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.002803 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.026352 B = 9986.895292 C =11281.318411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.099 3.901 4 C -0.136 4.136 5 C -0.098 4.098 6 C 0.100 3.900 7 N -0.657 5.657 8 C 0.515 3.485 9 O -0.543 6.543 10 C 0.054 3.946 11 H 0.081 0.919 12 C -0.134 4.134 13 N -0.505 5.505 14 C 0.046 3.954 15 C -0.109 4.109 16 C 0.226 3.774 17 O -0.601 6.601 18 C -0.556 4.556 19 H 0.040 0.960 20 C 0.032 3.968 21 N -0.909 5.909 22 Si 0.956 3.044 23 H -0.273 1.273 24 H -0.275 1.275 25 H -0.280 1.280 26 C 0.078 3.922 27 C -0.102 4.102 28 C -0.195 4.195 29 H 0.122 0.878 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.427 0.573 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.378 0.622 43 H 0.270 0.730 44 H 0.024 0.976 45 H 0.057 0.943 46 H 0.113 0.887 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.342 -16.744 16.678 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.054 3.946 4 C -0.155 4.155 5 C -0.118 4.118 6 C 0.006 3.994 7 N -0.305 5.305 8 C 0.303 3.697 9 O -0.418 6.418 10 C -0.058 4.058 11 H 0.098 0.902 12 C -0.192 4.192 13 N -0.231 5.231 14 C -0.081 4.081 15 C -0.148 4.148 16 C 0.186 3.814 17 O -0.410 6.410 18 C -0.595 4.595 19 H 0.058 0.942 20 C -0.168 4.168 21 N -0.548 5.548 22 Si 0.781 3.219 23 H -0.199 1.199 24 H -0.200 1.200 25 H -0.205 1.205 26 C -0.050 4.050 27 C -0.122 4.122 28 C -0.214 4.214 29 H 0.141 0.859 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.173 0.827 33 H 0.183 0.817 34 H 0.266 0.734 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.227 0.773 43 H 0.080 0.920 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.132 0.868 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.344 -17.436 16.603 24.307 hybrid contribution -0.408 1.148 -1.387 1.846 sum 2.935 -16.288 15.217 22.482 Atomic orbital electron populations 1.23300 0.76878 1.05532 1.01867 1.86040 1.23041 1.26450 1.88925 1.19204 0.93023 0.84215 0.98185 1.20529 0.91153 0.98979 1.04791 1.20997 1.01148 0.89283 1.00390 1.17842 0.91747 0.85605 1.04173 1.43312 1.26065 1.07153 1.53990 1.21036 0.84318 0.86685 0.77663 1.90734 1.26304 1.84792 1.39967 1.21948 0.95763 0.89279 0.98833 0.90190 1.21857 1.03489 1.03773 0.90062 1.64601 1.50365 1.02193 1.05896 1.23279 0.97509 0.88047 0.99229 1.22708 0.99357 0.97888 0.94807 1.19625 0.82810 0.90522 0.88423 1.86079 1.43482 1.45471 1.65963 1.21879 1.10251 0.98391 1.28942 0.94167 1.25617 0.99607 0.95022 0.96585 1.69734 1.36993 1.04733 1.43382 0.85591 0.80080 0.77784 0.78424 1.19900 1.19975 1.20467 1.22513 0.98322 0.96682 0.87521 1.20956 0.94022 0.97861 0.99406 1.21248 1.00894 0.91557 1.07717 0.85938 0.91860 0.92702 0.82665 0.81747 0.73357 0.89973 0.92260 0.88187 0.88418 0.93005 0.92463 0.93744 0.77259 0.92027 0.95774 0.92466 0.86850 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -6.69 10.50 -93.28 -0.98 -7.67 16 3 C 0.10 2.21 6.69 22.50 0.15 2.36 16 4 C -0.14 -2.59 9.98 22.35 0.22 -2.37 16 5 C -0.10 -1.81 9.96 22.38 0.22 -1.58 16 6 C 0.10 2.42 6.28 38.11 0.24 2.66 16 7 N -0.66 -14.46 5.24 -303.39 -1.59 -16.05 16 8 C 0.52 16.02 6.67 87.66 0.58 16.60 16 9 O -0.54 -22.61 12.57 -3.07 -0.04 -22.65 16 10 C 0.05 1.55 2.23 44.17 0.10 1.64 16 11 H 0.08 2.10 7.89 -2.39 -0.02 2.08 16 12 C -0.13 -2.62 8.93 71.99 0.64 -1.98 16 13 N -0.51 -19.78 4.83 -862.21 -4.16 -23.94 16 14 C 0.05 1.69 5.21 86.65 0.45 2.14 16 15 C -0.11 -5.14 5.31 31.80 0.17 -4.97 16 16 C 0.23 11.92 0.99 -10.66 -0.01 11.91 16 17 O -0.60 -32.56 12.94 -148.98 -1.93 -34.49 16 18 C -0.56 -32.43 8.12 25.60 0.21 -32.22 16 19 H 0.04 2.45 7.36 -2.91 -0.02 2.43 16 20 C 0.03 1.79 5.22 84.65 0.44 2.23 16 21 N -0.91 -49.78 10.89 21.45 0.23 -49.55 16 22 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 26 C 0.08 3.73 5.12 86.45 0.44 4.18 16 27 C -0.10 -2.87 8.65 22.38 0.19 -2.68 16 28 C -0.19 -4.74 9.03 22.35 0.20 -4.53 16 29 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 31 H 0.05 0.75 7.66 -2.39 -0.02 0.74 16 32 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.43 5.60 8.50 -92.71 -0.79 4.81 16 35 H 0.08 1.49 6.60 -2.38 -0.02 1.48 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.16 7.84 -2.39 -0.02 1.14 16 38 H 0.10 3.01 7.56 -2.39 -0.02 3.00 16 39 H 0.05 1.73 8.02 -2.38 -0.02 1.71 16 40 H 0.06 2.76 7.99 -2.39 -0.02 2.74 16 41 H 0.04 2.27 7.86 -2.39 -0.02 2.25 16 42 H 0.38 20.68 7.29 -74.06 -0.54 20.14 16 43 H 0.27 14.00 8.31 -92.71 -0.77 13.22 16 44 H 0.02 1.14 7.43 -2.38 -0.02 1.12 16 45 H 0.06 3.11 6.51 -2.39 -0.02 3.09 16 46 H 0.11 3.76 6.42 -2.91 -0.02 3.74 16 47 H 0.14 2.91 6.29 -2.91 -0.02 2.89 16 Total: -1.00 -73.79 375.62 -1.39 -75.18 By element: Atomic # 1 Polarization: 38.03 SS G_CDS: -0.32 Total: 37.71 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 5.37 Total: -5.25 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -5.52 Total: -89.54 kcal Atomic # 8 Polarization: -61.86 SS G_CDS: -2.95 Total: -64.80 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -73.79 -1.39 -75.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.242 kcal (2) G-P(sol) polarization free energy of solvation -73.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds