Wall clock time and date at job start Tue Mar 31 2020 18:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35965 * 117.00396 * 2 1 4 4 C 1.38719 * 119.99002 * 180.02562 * 3 2 1 5 5 C 1.38087 * 120.01953 * 180.02562 * 4 3 2 6 6 C 1.38849 * 119.98381 * 359.97438 * 5 4 3 7 7 N 1.40108 * 120.01925 * 180.02562 * 6 5 4 8 8 C 1.34784 * 119.99778 * 35.08317 * 7 6 5 9 9 O 1.21295 * 119.99695 * 355.39784 * 8 7 6 10 10 C 1.50695 * 119.99841 * 175.38781 * 8 7 6 11 11 H 1.08996 * 109.47398 * 300.00469 * 10 8 7 12 12 C 1.53002 * 109.46980 * 60.00563 * 10 8 7 13 13 N 1.46903 * 109.47114 * 180.02562 * 10 8 7 14 14 C 1.47443 * 110.99758 * 59.87621 * 13 10 8 15 15 C 1.54318 * 107.23410 * 123.25624 * 14 13 10 16 16 C 1.55139 * 103.01885 * 22.28533 * 15 14 13 17 17 O 1.42903 * 110.99118 * 82.43479 * 16 15 14 18 18 C 1.50698 * 110.99388 * 206.25641 * 16 15 14 19 19 H 1.07992 * 120.00437 * 118.54392 * 18 16 15 20 20 C 1.37879 * 119.99683 * 298.54603 * 18 16 15 21 21 N 1.31519 * 120.00300 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99945 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46994 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47181 * 209.99683 * 22 20 18 25 25 H 1.48493 * 109.47260 * 330.00087 * 22 20 18 26 26 C 1.47837 * 111.00195 * 180.71731 * 13 10 8 27 27 C 1.38847 * 119.96897 * 0.27572 * 6 5 4 28 28 C 1.38089 * 119.98295 * 359.44745 * 27 6 5 29 29 H 1.09002 * 109.47572 * 60.00127 * 1 2 3 30 30 H 1.09005 * 109.47279 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47199 * 300.00096 * 1 2 3 32 32 H 1.07996 * 119.99136 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.01320 * 180.02562 * 5 4 3 34 34 H 0.97000 * 120.00568 * 215.09175 * 7 6 5 35 35 H 1.09007 * 109.46868 * 179.97438 * 12 10 8 36 36 H 1.08998 * 109.47251 * 299.99827 * 12 10 8 37 37 H 1.08996 * 109.47132 * 59.99742 * 12 10 8 38 38 H 1.09003 * 109.89108 * 242.66377 * 14 13 10 39 39 H 1.09004 * 109.89207 * 3.69136 * 14 13 10 40 40 H 1.09005 * 110.70541 * 140.66505 * 15 14 13 41 41 H 1.08999 * 110.70812 * 263.90374 * 15 14 13 42 42 H 0.96696 * 113.99872 * 61.45755 * 17 16 15 43 43 H 0.96998 * 120.00516 * 180.02562 * 21 20 18 44 44 H 1.09004 * 110.37549 * 332.46787 * 26 13 10 45 45 H 1.09006 * 110.37457 * 94.80805 * 26 13 10 46 46 H 1.07999 * 120.01238 * 179.70070 * 27 6 5 47 47 H 1.08007 * 119.99208 * 180.27540 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4316 1.2837 -0.0005 5 6 4.0592 2.5137 0.0000 6 6 3.3034 3.6784 0.0005 7 7 3.9394 4.9268 0.0005 8 6 5.0961 5.0937 -0.6708 9 8 5.6297 4.1444 -1.2050 10 6 5.7264 6.4598 -0.7579 11 1 5.0365 7.1477 -1.2467 12 6 6.0401 6.9674 0.6510 13 7 6.9690 6.3770 -1.5371 14 6 6.7047 5.8877 -2.9026 15 6 7.2472 6.9498 -3.8819 16 6 8.2939 7.7114 -3.0268 17 8 9.5412 7.0143 -3.0040 18 6 8.4752 9.1219 -3.5254 19 1 8.2456 9.9566 -2.8798 20 6 8.9342 9.3467 -4.8060 21 7 9.2142 8.3302 -5.5921 22 14 9.1583 11.0951 -5.4244 23 1 10.5358 11.5564 -5.1161 24 1 8.9408 11.1324 -6.8929 25 1 8.1766 11.9863 -4.7557 26 6 7.6254 7.6984 -1.6294 27 6 1.9168 3.6054 0.0063 28 6 1.2905 2.3747 0.0000 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0194 0.3777 -0.0005 33 1 5.1377 2.5698 -0.0008 34 1 3.5474 5.6709 0.4837 35 1 6.4964 7.9554 0.5879 36 1 5.1180 7.0289 1.2288 37 1 6.7299 6.2795 1.1398 38 1 7.2179 4.9394 -3.0625 39 1 5.6324 5.7581 -3.0491 40 1 7.7225 6.4754 -4.7405 41 1 6.4503 7.6207 -4.2030 42 1 9.9507 6.9125 -3.8740 43 1 9.5375 8.4883 -6.4929 44 1 6.8858 8.4957 -1.5552 45 1 8.3779 7.8038 -0.8478 46 1 1.3282 4.5109 0.0116 47 1 0.2120 2.3178 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:02 Heat of formation + Delta-G solvation = -76.930696 kcal Electronic energy + Delta-G solvation = -28969.520054 eV Core-core repulsion = 24925.156266 eV Total energy + Delta-G solvation = -4044.363788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.80973 -39.85731 -38.34257 -37.20321 -34.88538 -34.46180 -32.12348 -31.90964 -31.27431 -29.23811 -28.24475 -27.78451 -27.24221 -25.17604 -23.65388 -23.03321 -21.97475 -20.59382 -19.74974 -19.40324 -18.41092 -17.71951 -17.00117 -16.89150 -16.20893 -15.95304 -15.47360 -15.10037 -14.84764 -14.77138 -14.23946 -14.18545 -13.90984 -13.80190 -13.44351 -13.07412 -12.93304 -12.74747 -12.62477 -12.29083 -12.24475 -12.03658 -11.72280 -11.61753 -11.54126 -11.20565 -11.11702 -11.07998 -11.00863 -10.71582 -10.41582 -10.25999 -9.98310 -9.82684 -9.50058 -9.17802 -9.12297 -8.58435 -8.04277 -7.85937 -7.60480 -6.19565 -4.28334 1.15429 1.20432 2.68944 2.92730 3.09868 3.22232 3.29502 3.31595 3.63919 4.28711 4.50653 4.54587 4.67184 4.69954 4.81493 4.83691 5.07996 5.10021 5.13842 5.15348 5.26367 5.29715 5.46057 5.58526 5.75094 5.78312 5.80604 5.83343 6.00403 6.10256 6.12369 6.16206 6.21570 6.26752 6.36372 6.55597 6.70266 6.75307 6.94035 7.12417 7.18786 7.30634 7.43535 7.52360 7.64654 7.71020 7.83881 8.16554 8.24253 8.73781 9.40377 9.55418 10.87256 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026004 B = 0.002272 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.487614 B =12319.280365 C =12528.339078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.106 3.894 4 C -0.131 4.131 5 C -0.081 4.081 6 C 0.117 3.883 7 N -0.679 5.679 8 C 0.519 3.481 9 O -0.495 6.495 10 C 0.061 3.939 11 H 0.064 0.936 12 C -0.142 4.142 13 N -0.506 5.506 14 C 0.058 3.942 15 C -0.147 4.147 16 C 0.252 3.748 17 O -0.578 6.578 18 C -0.536 4.536 19 H 0.060 0.940 20 C 0.071 3.929 21 N -0.893 5.893 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.061 3.939 27 C -0.109 4.109 28 C -0.190 4.190 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.133 0.867 33 H 0.149 0.851 34 H 0.408 0.592 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.377 0.623 43 H 0.266 0.734 44 H 0.047 0.953 45 H 0.073 0.927 46 H 0.127 0.873 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.891 -9.616 12.508 23.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.061 3.939 4 C -0.150 4.150 5 C -0.101 4.101 6 C 0.023 3.977 7 N -0.326 5.326 8 C 0.306 3.694 9 O -0.367 6.367 10 C -0.052 4.052 11 H 0.082 0.918 12 C -0.199 4.199 13 N -0.231 5.231 14 C -0.069 4.069 15 C -0.187 4.187 16 C 0.212 3.788 17 O -0.386 6.386 18 C -0.575 4.575 19 H 0.079 0.921 20 C -0.131 4.131 21 N -0.532 5.532 22 Si 0.727 3.273 23 H -0.204 1.204 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.065 4.065 27 C -0.130 4.130 28 C -0.210 4.210 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.151 0.849 33 H 0.166 0.834 34 H 0.243 0.757 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.226 0.774 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.145 0.855 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.113 -10.868 12.805 23.978 hybrid contribution -0.985 2.093 -1.322 2.664 sum -18.098 -8.776 11.483 23.161 Atomic orbital electron populations 1.23027 0.78665 1.03797 1.01240 1.86081 1.21145 1.26989 1.89075 1.19012 0.92346 0.84087 0.98481 1.20375 0.91169 0.98502 1.05004 1.21218 1.01491 0.89897 0.97469 1.17694 0.91130 0.85553 1.03305 1.43597 1.24913 1.11237 1.52845 1.20929 0.79568 0.91807 0.77117 1.90705 1.60457 1.41705 1.43815 1.21756 0.93759 0.91933 0.97731 0.91799 1.21819 1.01772 1.02786 0.93560 1.63544 1.18748 1.26225 1.14626 1.22741 0.97603 0.99447 0.87104 1.23320 0.99764 0.96702 0.98881 1.19520 0.81569 0.89620 0.88114 1.86147 1.37443 1.79398 1.35571 1.21520 1.45311 0.92159 0.98501 0.92128 1.25009 0.94202 0.97491 0.96436 1.69746 1.44682 1.30228 1.08522 0.86485 0.78666 0.84347 0.77823 1.20434 1.21147 1.19891 1.23036 0.96555 0.87083 0.99852 1.20673 0.92515 0.97771 1.02041 1.20969 0.99801 0.91716 1.08471 0.92725 0.88378 0.92777 0.84884 0.83353 0.75659 0.90750 0.92438 0.91143 0.90956 0.95209 0.90364 0.92836 0.77396 0.92369 0.93434 0.90863 0.85502 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.31 10.50 -19.63 -0.21 -3.52 16 3 C 0.11 1.19 6.69 -39.22 -0.26 0.93 16 4 C -0.13 -1.59 9.98 -39.46 -0.39 -1.99 16 5 C -0.08 -1.07 8.69 -39.41 -0.34 -1.42 16 6 C 0.12 1.42 6.30 -83.62 -0.53 0.89 16 7 N -0.68 -7.77 5.27 -9.83 -0.05 -7.83 16 8 C 0.52 7.87 6.38 -10.98 -0.07 7.80 16 9 O -0.50 -9.33 12.23 5.54 0.07 -9.26 16 10 C 0.06 0.93 2.08 -68.86 -0.14 0.78 16 11 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 12 C -0.14 -1.71 8.97 37.16 0.33 -1.37 16 13 N -0.51 -10.03 4.83 -224.68 -1.08 -11.11 16 14 C 0.06 1.24 5.24 -2.84 -0.01 1.23 16 15 C -0.15 -3.50 5.37 -24.91 -0.13 -3.64 16 16 C 0.25 6.29 0.87 -89.63 -0.08 6.22 16 17 O -0.58 -15.40 13.16 -35.23 -0.46 -15.87 16 18 C -0.54 -14.26 8.27 -34.44 -0.28 -14.55 16 19 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 20 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 21 N -0.89 -24.00 10.75 55.43 0.60 -23.40 16 22 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.06 1.31 4.57 -2.30 -0.01 1.30 16 27 C -0.11 -1.09 9.96 -39.41 -0.39 -1.48 16 28 C -0.19 -1.84 9.03 -39.46 -0.36 -2.19 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 32 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.15 2.21 6.22 -52.49 -0.33 1.89 16 34 H 0.41 3.27 8.11 -40.82 -0.33 2.94 16 35 H 0.07 0.91 7.04 -51.92 -0.37 0.55 16 36 H 0.06 0.49 7.47 -51.93 -0.39 0.10 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.66 8.05 -51.93 -0.42 1.24 16 39 H 0.03 0.60 6.91 -51.93 -0.36 0.24 16 40 H 0.08 1.99 7.54 -51.93 -0.39 1.60 16 41 H 0.05 1.28 8.03 -51.93 -0.42 0.86 16 42 H 0.38 10.12 7.56 45.56 0.34 10.46 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.05 0.95 7.47 -51.93 -0.39 0.56 16 45 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 46 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.13 0.91 6.29 -52.48 -0.33 0.58 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -31.49 375.85 -8.52 -40.01 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -6.24 Total: 14.30 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -1.78 Total: -4.53 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.54 Total: -42.34 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.60 Total: -28.64 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.49 -8.52 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.919 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds