Wall clock time and date at job start Tue Mar 31 2020 18:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35965 * 117.00396 * 2 1 4 4 C 1.38719 * 119.99002 * 180.02562 * 3 2 1 5 5 C 1.38087 * 120.01953 * 180.02562 * 4 3 2 6 6 C 1.38849 * 119.98381 * 359.97438 * 5 4 3 7 7 N 1.40108 * 120.01925 * 180.02562 * 6 5 4 8 8 C 1.34784 * 119.99778 * 35.08317 * 7 6 5 9 9 O 1.21295 * 119.99695 * 355.39784 * 8 7 6 10 10 C 1.50695 * 119.99841 * 175.38781 * 8 7 6 11 11 H 1.08996 * 109.47398 * 300.00469 * 10 8 7 12 12 C 1.53002 * 109.46980 * 60.00563 * 10 8 7 13 13 N 1.46903 * 109.47114 * 180.02562 * 10 8 7 14 14 C 1.47443 * 110.99758 * 59.87621 * 13 10 8 15 15 C 1.54318 * 107.23410 * 123.25624 * 14 13 10 16 16 C 1.55139 * 103.01885 * 22.28533 * 15 14 13 17 17 O 1.42903 * 110.99118 * 82.43479 * 16 15 14 18 18 C 1.50698 * 110.99388 * 206.25641 * 16 15 14 19 19 H 1.07992 * 120.00437 * 118.54392 * 18 16 15 20 20 C 1.37879 * 119.99683 * 298.54603 * 18 16 15 21 21 N 1.31519 * 120.00300 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99945 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46994 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47181 * 209.99683 * 22 20 18 25 25 H 1.48493 * 109.47260 * 330.00087 * 22 20 18 26 26 C 1.47837 * 111.00195 * 180.71731 * 13 10 8 27 27 C 1.38847 * 119.96897 * 0.27572 * 6 5 4 28 28 C 1.38089 * 119.98295 * 359.44745 * 27 6 5 29 29 H 1.09002 * 109.47572 * 60.00127 * 1 2 3 30 30 H 1.09005 * 109.47279 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47199 * 300.00096 * 1 2 3 32 32 H 1.07996 * 119.99136 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.01320 * 180.02562 * 5 4 3 34 34 H 0.97000 * 120.00568 * 215.09175 * 7 6 5 35 35 H 1.09007 * 109.46868 * 179.97438 * 12 10 8 36 36 H 1.08998 * 109.47251 * 299.99827 * 12 10 8 37 37 H 1.08996 * 109.47132 * 59.99742 * 12 10 8 38 38 H 1.09003 * 109.89108 * 242.66377 * 14 13 10 39 39 H 1.09004 * 109.89207 * 3.69136 * 14 13 10 40 40 H 1.09005 * 110.70541 * 140.66505 * 15 14 13 41 41 H 1.08999 * 110.70812 * 263.90374 * 15 14 13 42 42 H 0.96696 * 113.99872 * 61.45755 * 17 16 15 43 43 H 0.96998 * 120.00516 * 180.02562 * 21 20 18 44 44 H 1.09004 * 110.37549 * 332.46787 * 26 13 10 45 45 H 1.09006 * 110.37457 * 94.80805 * 26 13 10 46 46 H 1.07999 * 120.01238 * 179.70070 * 27 6 5 47 47 H 1.08007 * 119.99208 * 180.27540 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4316 1.2837 -0.0005 5 6 4.0592 2.5137 0.0000 6 6 3.3034 3.6784 0.0005 7 7 3.9394 4.9268 0.0005 8 6 5.0961 5.0937 -0.6708 9 8 5.6297 4.1444 -1.2050 10 6 5.7264 6.4598 -0.7579 11 1 5.0365 7.1477 -1.2467 12 6 6.0401 6.9674 0.6510 13 7 6.9690 6.3770 -1.5371 14 6 6.7047 5.8877 -2.9026 15 6 7.2472 6.9498 -3.8819 16 6 8.2939 7.7114 -3.0268 17 8 9.5412 7.0143 -3.0040 18 6 8.4752 9.1219 -3.5254 19 1 8.2456 9.9566 -2.8798 20 6 8.9342 9.3467 -4.8060 21 7 9.2142 8.3302 -5.5921 22 14 9.1583 11.0951 -5.4244 23 1 10.5358 11.5564 -5.1161 24 1 8.9408 11.1324 -6.8929 25 1 8.1766 11.9863 -4.7557 26 6 7.6254 7.6984 -1.6294 27 6 1.9168 3.6054 0.0063 28 6 1.2905 2.3747 0.0000 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0194 0.3777 -0.0005 33 1 5.1377 2.5698 -0.0008 34 1 3.5474 5.6709 0.4837 35 1 6.4964 7.9554 0.5879 36 1 5.1180 7.0289 1.2288 37 1 6.7299 6.2795 1.1398 38 1 7.2179 4.9394 -3.0625 39 1 5.6324 5.7581 -3.0491 40 1 7.7225 6.4754 -4.7405 41 1 6.4503 7.6207 -4.2030 42 1 9.9507 6.9125 -3.8740 43 1 9.5375 8.4883 -6.4929 44 1 6.8858 8.4957 -1.5552 45 1 8.3779 7.8038 -0.8478 46 1 1.3282 4.5109 0.0116 47 1 0.2120 2.3178 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:02 Heat of formation + Delta-G solvation = -100.990141 kcal Electronic energy + Delta-G solvation = -28970.563350 eV Core-core repulsion = 24925.156266 eV Total energy + Delta-G solvation = -4045.407084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.85599 -40.83802 -39.78862 -38.26636 -36.59867 -35.51200 -34.17123 -33.37121 -32.09960 -30.22390 -30.05145 -29.16166 -27.95783 -26.87198 -24.95324 -23.88411 -23.06951 -22.09258 -21.33456 -20.87164 -19.23852 -19.03523 -18.50986 -18.09213 -17.22396 -16.91221 -16.86598 -16.59405 -16.33621 -15.95608 -15.76151 -15.50102 -15.20499 -14.69872 -14.51814 -14.36070 -14.10268 -14.02725 -13.74030 -13.64803 -13.50026 -13.20193 -13.08698 -13.03572 -12.82821 -12.72455 -12.68980 -12.47161 -12.26449 -12.22329 -12.09919 -11.82592 -11.72025 -11.09840 -10.92999 -10.68951 -10.58258 -10.06852 -9.99790 -9.17123 -8.73037 -8.19744 -6.36380 0.29427 0.33571 1.41743 1.43689 1.52812 1.57047 1.93008 2.39065 2.41946 2.77816 3.01986 3.10193 3.60615 3.84141 3.93170 3.95034 4.00178 4.06628 4.14681 4.25254 4.35604 4.38027 4.39306 4.43947 4.48236 4.60323 4.71758 4.73980 4.75183 4.87645 4.90845 4.93202 5.02284 5.08693 5.26029 5.28129 5.29344 5.34117 5.45910 5.47542 5.53928 5.79874 5.84966 5.94128 6.12363 6.21928 6.45884 6.48984 6.70504 7.17268 7.35159 7.45178 8.85655 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026004 B = 0.002272 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.487614 B =12319.280365 C =12528.339078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.103 3.897 4 C -0.151 4.151 5 C -0.100 4.100 6 C 0.097 3.903 7 N -0.657 5.657 8 C 0.518 3.482 9 O -0.541 6.541 10 C 0.057 3.943 11 H 0.082 0.918 12 C -0.136 4.136 13 N -0.520 5.520 14 C 0.076 3.924 15 C -0.137 4.137 16 C 0.232 3.768 17 O -0.589 6.589 18 C -0.557 4.557 19 H 0.062 0.938 20 C 0.026 3.974 21 N -0.914 5.914 22 Si 0.962 3.038 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.266 1.266 26 C 0.075 3.925 27 C -0.097 4.097 28 C -0.185 4.185 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.427 0.573 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.370 0.630 43 H 0.267 0.733 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.161 0.839 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.131 -8.250 13.873 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.057 3.943 4 C -0.170 4.170 5 C -0.120 4.120 6 C 0.003 3.997 7 N -0.305 5.305 8 C 0.306 3.694 9 O -0.417 6.417 10 C -0.055 4.055 11 H 0.100 0.900 12 C -0.194 4.194 13 N -0.245 5.245 14 C -0.052 4.052 15 C -0.177 4.177 16 C 0.192 3.808 17 O -0.397 6.397 18 C -0.595 4.595 19 H 0.080 0.920 20 C -0.174 4.174 21 N -0.553 5.553 22 Si 0.788 3.212 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.190 1.190 26 C -0.052 4.052 27 C -0.117 4.117 28 C -0.204 4.204 29 H 0.083 0.917 30 H 0.134 0.866 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.266 0.734 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.219 0.781 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.179 0.821 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.407 -9.491 14.220 26.622 hybrid contribution -0.075 1.551 -1.714 2.313 sum -20.482 -7.939 12.506 25.277 Atomic orbital electron populations 1.23360 0.76354 1.05562 1.02433 1.86063 1.23578 1.26756 1.88866 1.19132 0.92083 0.85180 0.97893 1.20419 0.92293 0.98145 1.06120 1.21076 1.00500 0.91264 0.99149 1.17845 0.92154 0.85036 1.04665 1.43288 1.23588 1.11815 1.51788 1.20932 0.80272 0.91167 0.77022 1.90709 1.61972 1.42901 1.46086 1.21927 0.92102 0.92594 0.98854 0.90033 1.21842 1.03749 1.02048 0.91738 1.63393 1.21826 1.25473 1.13790 1.22438 0.97609 0.97459 0.87671 1.23132 0.99202 0.96930 0.98400 1.19849 0.81173 0.89109 0.90668 1.86145 1.38535 1.79788 1.35186 1.21806 1.45808 0.92917 0.98953 0.91986 1.25767 0.93893 1.01147 0.96626 1.69859 1.44855 1.31918 1.08656 0.85498 0.78549 0.79990 0.77200 1.20370 1.20944 1.18986 1.22859 0.96707 0.88302 0.97359 1.21009 0.91477 0.99260 0.99957 1.21346 1.01353 0.90854 1.06880 0.91737 0.86583 0.91200 0.85126 0.86018 0.73378 0.90729 0.88088 0.92400 0.93439 0.94094 0.92967 0.93323 0.78145 0.92353 0.91774 0.91207 0.82136 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.53 10.50 -93.16 -0.98 -7.51 16 3 C 0.10 2.17 6.69 22.50 0.15 2.32 16 4 C -0.15 -3.75 9.98 22.35 0.22 -3.53 16 5 C -0.10 -2.73 8.69 22.38 0.19 -2.54 16 6 C 0.10 2.20 6.30 38.11 0.24 2.44 16 7 N -0.66 -13.67 5.27 -303.39 -1.60 -15.27 16 8 C 0.52 15.32 6.38 87.65 0.56 15.88 16 9 O -0.54 -20.99 12.23 -3.08 -0.04 -21.03 16 10 C 0.06 1.65 2.08 44.17 0.09 1.74 16 11 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 12 C -0.14 -2.94 8.97 71.98 0.65 -2.29 16 13 N -0.52 -20.54 4.83 -864.75 -4.18 -24.71 16 14 C 0.08 3.32 5.24 86.65 0.45 3.77 16 15 C -0.14 -6.70 5.37 31.77 0.17 -6.53 16 16 C 0.23 11.76 0.87 -10.15 -0.01 11.75 16 17 O -0.59 -32.46 13.16 -148.98 -1.96 -34.42 16 18 C -0.56 -29.67 8.27 25.60 0.21 -29.46 16 19 H 0.06 3.21 7.79 -2.91 -0.02 3.18 16 20 C 0.03 1.39 5.29 84.65 0.45 1.84 16 21 N -0.91 -50.02 10.75 21.45 0.23 -49.79 16 22 Si 0.96 41.99 29.54 68.60 2.03 44.02 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 C 0.07 3.14 4.57 86.78 0.40 3.54 16 27 C -0.10 -1.61 9.96 22.38 0.22 -1.38 16 28 C -0.19 -3.00 9.03 22.35 0.20 -2.79 16 29 H 0.06 0.49 7.66 -2.39 -0.02 0.47 16 30 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 32 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.12 3.95 6.22 -2.91 -0.02 3.93 16 34 H 0.43 5.27 8.11 -92.71 -0.75 4.51 16 35 H 0.07 1.63 7.04 -2.38 -0.02 1.62 16 36 H 0.10 1.29 7.47 -2.39 -0.02 1.27 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 2.29 8.05 -2.39 -0.02 2.27 16 39 H 0.04 1.66 6.91 -2.39 -0.02 1.65 16 40 H 0.05 2.77 7.54 -2.38 -0.02 2.75 16 41 H 0.05 2.36 8.03 -2.39 -0.02 2.34 16 42 H 0.37 20.81 7.56 -74.06 -0.56 20.25 16 43 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.06 2.45 7.47 -2.39 -0.02 2.44 16 45 H 0.07 2.96 8.14 -2.38 -0.02 2.95 16 46 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 47 H 0.16 1.52 6.29 -2.91 -0.02 1.50 16 Total: -1.00 -70.97 375.85 -1.49 -72.46 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: -0.31 Total: 40.22 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 5.31 Total: -3.96 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -5.54 Total: -89.77 kcal Atomic # 8 Polarization: -59.98 SS G_CDS: -2.98 Total: -62.96 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -70.97 -1.49 -72.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.535 kcal (2) G-P(sol) polarization free energy of solvation -70.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds