Wall clock time and date at job start Tue Mar 31 2020 17:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.46926 * 120.63296 * 269.72277 * 17 14 12 19 19 C 1.52765 * 109.00752 * 233.58512 * 18 17 14 20 20 C 1.53040 * 109.38269 * 305.58561 * 19 18 17 21 21 C 1.52999 * 109.46188 * 181.25967 * 20 19 18 22 22 H 1.08997 * 109.47279 * 299.93863 * 21 20 19 23 23 C 1.52992 * 109.47184 * 179.97438 * 21 20 19 24 24 C 1.53008 * 109.46768 * 59.93252 * 21 20 19 25 25 O 1.42896 * 109.46945 * 185.00117 * 24 21 20 26 26 C 1.53039 * 109.53733 * 61.23925 * 20 19 18 27 27 C 1.46932 * 120.62807 * 90.00340 * 17 14 12 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 33 33 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 34 34 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 35 35 H 1.08995 * 109.58473 * 353.41667 * 18 17 14 36 36 H 1.08997 * 109.58835 * 113.84461 * 18 17 14 37 37 H 1.08996 * 109.56462 * 185.55170 * 19 18 17 38 38 H 1.09002 * 109.38925 * 65.51111 * 19 18 17 39 39 H 1.09006 * 109.44844 * 301.23014 * 20 19 18 40 40 H 1.09005 * 109.47346 * 60.00089 * 23 21 20 41 41 H 1.09001 * 109.47055 * 180.02562 * 23 21 20 42 42 H 1.08997 * 109.47730 * 300.00603 * 23 21 20 43 43 H 1.09001 * 109.47242 * 305.00105 * 24 21 20 44 44 H 1.08997 * 109.46687 * 65.00028 * 24 21 20 45 45 H 0.96696 * 114.00117 * 180.02562 * 25 24 21 46 46 H 1.09000 * 109.49791 * 178.68049 * 26 20 19 47 47 H 1.09008 * 109.49802 * 58.58821 * 26 20 19 48 48 H 1.09003 * 109.58105 * 246.15660 * 27 17 14 49 49 H 1.08995 * 109.58628 * 6.57558 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.4423 2.1683 3.1946 19 6 1.7579 3.0126 4.4281 20 6 1.2128 2.3131 5.6754 21 6 1.5003 3.1723 6.9083 22 1 2.5764 3.3111 7.0116 23 6 0.9549 2.4736 8.1553 24 6 0.8234 4.5353 6.7491 25 8 1.1867 5.3783 7.8442 26 6 1.8899 0.9500 5.8348 27 6 1.5715 0.0802 4.6147 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7093 1.1618 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6239 -2.2853 2.5002 34 1 0.6905 -2.3003 0.9847 35 1 1.9161 2.6119 2.3190 36 1 0.3629 2.1295 3.0483 37 1 1.2924 3.9930 4.3281 38 1 2.8377 3.1301 4.5195 39 1 0.1366 2.1741 5.5724 40 1 1.4377 1.5028 8.2683 41 1 1.1593 3.0859 9.0335 42 1 -0.1212 2.3342 8.0524 43 1 1.1460 4.9943 5.8146 44 1 -0.2586 4.4040 6.7349 45 1 0.7925 6.2605 7.8090 46 1 1.5184 0.4624 6.7361 47 1 2.9686 1.0864 5.9127 48 1 0.5027 -0.1325 4.5864 49 1 2.1304 -0.8536 4.6756 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593643445.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:38 Heat of formation + Delta-G solvation = -138.327353 kcal Electronic energy + Delta-G solvation = -29120.545924 eV Core-core repulsion = 25208.963728 eV Total energy + Delta-G solvation = -3911.582196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.38068 -37.14599 -36.73177 -36.14062 -35.20642 -34.60867 -32.57621 -31.23432 -30.36301 -29.08811 -26.71929 -25.58869 -25.14342 -24.39435 -23.02312 -21.01155 -20.62004 -20.06261 -18.42531 -17.71178 -17.23118 -16.84063 -16.29946 -15.64381 -15.51252 -14.89082 -14.74135 -14.54312 -14.24386 -14.08305 -13.83619 -13.51361 -13.28372 -13.18439 -12.83747 -12.74994 -12.53680 -12.15059 -11.98357 -11.82821 -11.72988 -11.52956 -11.38961 -11.35863 -11.27458 -11.22805 -11.00862 -10.96205 -10.80133 -10.74340 -10.51141 -10.38668 -10.30445 -10.25111 -10.03401 -10.00232 -9.26709 -8.82548 -8.45185 -7.95067 -6.07547 -4.13905 1.17689 3.30251 3.34444 3.37758 3.46169 3.91823 4.07647 4.40136 4.50470 4.59572 4.74828 4.81275 4.88273 5.11096 5.13399 5.21770 5.23905 5.26414 5.37753 5.38726 5.40028 5.54988 5.59798 5.67169 5.71737 5.75023 5.82562 5.88137 5.97140 6.01645 6.07184 6.14962 6.15794 6.28769 6.36870 6.41383 6.61739 6.71386 6.78582 6.86855 7.01922 7.35871 7.47290 7.63532 7.78821 8.03857 8.27805 8.88023 9.51825 10.98086 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022083 B = 0.003173 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.632150 B = 8823.690048 C = 9369.061069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.991 5.991 13 C 0.111 3.889 14 S 2.777 3.223 15 O -0.995 6.995 16 O -0.973 6.973 17 N -1.010 6.010 18 C 0.121 3.879 19 C -0.131 4.131 20 C -0.078 4.078 21 C -0.087 4.087 22 H 0.077 0.923 23 C -0.145 4.145 24 C 0.076 3.924 25 O -0.575 6.575 26 C -0.126 4.126 27 C 0.121 3.879 28 H 0.010 0.990 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.263 0.737 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.377 0.623 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 4.343 18.315 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.075 0.925 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.833 5.833 13 C -0.035 4.035 14 S 2.788 3.212 15 O -0.979 6.979 16 O -0.957 6.957 17 N -0.848 5.848 18 C -0.005 4.005 19 C -0.170 4.170 20 C -0.097 4.097 21 C -0.106 4.106 22 H 0.095 0.905 23 C -0.202 4.202 24 C -0.002 4.002 25 O -0.380 6.380 26 C -0.165 4.165 27 C -0.005 4.005 28 H 0.029 0.971 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.224 0.776 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.364 3.969 18.321 19.046 hybrid contribution -0.541 0.015 -1.124 1.248 sum -3.906 3.984 17.197 18.080 Atomic orbital electron populations 1.22114 0.98329 0.99699 1.00537 1.18706 0.91229 0.92919 0.80548 0.92469 1.21307 1.31596 1.13005 0.90094 0.92058 1.24899 0.94955 0.95011 0.98968 1.69842 1.36570 1.22683 1.23866 0.86560 0.79381 0.79587 0.81902 1.20243 1.21205 1.20156 1.57773 1.70025 1.19785 1.35755 1.21119 1.01637 0.82157 0.98624 1.02041 0.73830 0.73064 0.72310 1.93518 1.69214 1.60508 1.74660 1.93582 1.73958 1.55883 1.72228 1.58396 1.67837 1.24297 1.34318 1.21276 0.99524 0.81128 0.98533 1.21966 1.01977 0.98571 0.94476 1.21098 1.00479 0.94693 0.93443 1.21156 1.01082 0.92971 0.95344 0.90477 1.21818 1.00600 1.00310 0.97454 1.22366 0.97912 0.91096 0.88801 1.86462 1.75223 1.28198 1.48151 1.21961 1.01364 0.95342 0.97846 1.21351 1.00455 0.94974 0.83734 0.97074 0.88921 0.94817 0.92662 0.93358 0.93475 0.91040 0.88706 0.91589 0.90752 0.91324 0.90743 0.92317 0.92252 0.92981 0.93066 0.93763 0.77647 0.90584 0.91379 0.91742 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.95 37.16 0.33 -2.95 16 2 C 0.27 6.53 2.62 -69.08 -0.18 6.35 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.52 -14.04 8.37 -34.44 -0.29 -14.33 16 5 H 0.06 1.65 7.65 -52.48 -0.40 1.25 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.99 -20.64 3.12 -115.85 -0.36 -21.00 16 13 C 0.11 1.99 9.53 59.85 0.57 2.56 16 14 S 2.78 55.10 6.10 -107.50 -0.66 54.45 16 15 O -1.00 -20.73 15.80 -57.17 -0.90 -21.63 16 16 O -0.97 -22.69 15.28 -57.17 -0.87 -23.57 16 17 N -1.01 -15.29 3.35 -113.77 -0.38 -15.67 16 18 C 0.12 1.65 6.45 -3.93 -0.03 1.63 16 19 C -0.13 -1.43 5.04 -26.83 -0.14 -1.57 16 20 C -0.08 -0.75 1.74 -90.58 -0.16 -0.91 16 21 C -0.09 -0.79 2.21 -90.62 -0.20 -0.99 16 22 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 23 C -0.14 -1.22 8.74 37.15 0.32 -0.89 16 24 C 0.08 0.63 6.21 37.16 0.23 0.86 16 25 O -0.58 -5.02 13.20 -35.23 -0.46 -5.49 16 26 C -0.13 -1.29 5.04 -26.61 -0.13 -1.43 16 27 C 0.12 1.47 6.48 -3.71 -0.02 1.44 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 30 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 34 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 35 H 0.09 1.48 6.91 -51.93 -0.36 1.12 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.68 6.25 -51.93 -0.32 0.36 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.46 6.40 -51.93 -0.33 0.13 16 41 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.40 6.14 -51.93 -0.32 0.08 16 44 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 1.65 9.12 45.56 0.42 2.07 16 46 H 0.08 0.64 6.36 -51.93 -0.33 0.31 16 47 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.09 1.13 6.92 -51.93 -0.36 0.77 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -32.71 382.87 -9.58 -42.29 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.54 Total: 1.30 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 0.22 Total: -8.59 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.12 Total: -60.65 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -2.24 Total: -50.69 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 55.10 SS G_CDS: -0.66 Total: 54.45 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.71 -9.58 -42.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593643445.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.037 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds