Wall clock time and date at job start Tue Mar 31 2020 17:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.46926 * 120.63296 * 269.72277 * 17 14 12 19 19 C 1.52765 * 109.00752 * 233.58512 * 18 17 14 20 20 C 1.53040 * 109.38269 * 305.58561 * 19 18 17 21 21 C 1.52999 * 109.46188 * 181.25967 * 20 19 18 22 22 H 1.08997 * 109.47279 * 299.93863 * 21 20 19 23 23 C 1.52992 * 109.47184 * 179.97438 * 21 20 19 24 24 C 1.53008 * 109.46768 * 59.93252 * 21 20 19 25 25 O 1.42896 * 109.46945 * 185.00117 * 24 21 20 26 26 C 1.53039 * 109.53733 * 61.23925 * 20 19 18 27 27 C 1.46932 * 120.62807 * 90.00340 * 17 14 12 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 33 33 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 34 34 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 35 35 H 1.08995 * 109.58473 * 353.41667 * 18 17 14 36 36 H 1.08997 * 109.58835 * 113.84461 * 18 17 14 37 37 H 1.08996 * 109.56462 * 185.55170 * 19 18 17 38 38 H 1.09002 * 109.38925 * 65.51111 * 19 18 17 39 39 H 1.09006 * 109.44844 * 301.23014 * 20 19 18 40 40 H 1.09005 * 109.47346 * 60.00089 * 23 21 20 41 41 H 1.09001 * 109.47055 * 180.02562 * 23 21 20 42 42 H 1.08997 * 109.47730 * 300.00603 * 23 21 20 43 43 H 1.09001 * 109.47242 * 305.00105 * 24 21 20 44 44 H 1.08997 * 109.46687 * 65.00028 * 24 21 20 45 45 H 0.96696 * 114.00117 * 180.02562 * 25 24 21 46 46 H 1.09000 * 109.49791 * 178.68049 * 26 20 19 47 47 H 1.09008 * 109.49802 * 58.58821 * 26 20 19 48 48 H 1.09003 * 109.58105 * 246.15660 * 27 17 14 49 49 H 1.08995 * 109.58628 * 6.57558 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.4423 2.1683 3.1946 19 6 1.7579 3.0126 4.4281 20 6 1.2128 2.3131 5.6754 21 6 1.5003 3.1723 6.9083 22 1 2.5764 3.3111 7.0116 23 6 0.9549 2.4736 8.1553 24 6 0.8234 4.5353 6.7491 25 8 1.1867 5.3783 7.8442 26 6 1.8899 0.9500 5.8348 27 6 1.5715 0.0802 4.6147 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7093 1.1618 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6239 -2.2853 2.5002 34 1 0.6905 -2.3003 0.9847 35 1 1.9161 2.6119 2.3190 36 1 0.3629 2.1295 3.0483 37 1 1.2924 3.9930 4.3281 38 1 2.8377 3.1301 4.5195 39 1 0.1366 2.1741 5.5724 40 1 1.4377 1.5028 8.2683 41 1 1.1593 3.0859 9.0335 42 1 -0.1212 2.3342 8.0524 43 1 1.1460 4.9943 5.8146 44 1 -0.2586 4.4040 6.7349 45 1 0.7925 6.2605 7.8090 46 1 1.5184 0.4624 6.7361 47 1 2.9686 1.0864 5.9127 48 1 0.5027 -0.1325 4.5864 49 1 2.1304 -0.8536 4.6756 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593643445.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:37 Heat of formation + Delta-G solvation = -162.654953 kcal Electronic energy + Delta-G solvation = -29121.600848 eV Core-core repulsion = 25208.963728 eV Total energy + Delta-G solvation = -3912.637120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.23372 -38.40440 -37.90418 -37.87269 -36.88699 -35.46185 -34.52845 -32.18695 -31.24120 -30.90167 -27.40170 -27.28511 -27.00199 -25.33375 -23.95410 -22.55348 -21.82510 -20.83829 -19.78581 -18.95719 -18.54711 -18.21835 -18.04986 -17.20324 -16.60377 -16.21816 -15.74217 -15.51835 -15.40279 -15.21123 -14.98360 -14.76502 -14.74242 -14.49774 -14.19340 -13.80113 -13.61914 -13.43551 -13.37936 -13.26554 -13.16529 -13.00306 -12.90505 -12.79466 -12.60214 -12.55165 -12.44923 -12.24623 -12.15427 -12.14265 -11.95366 -11.84870 -11.50542 -11.22055 -11.15433 -11.09956 -10.68546 -10.50776 -9.97753 -9.63922 -8.12161 -6.25608 -0.36378 1.41808 1.43938 1.50841 2.03515 2.41970 2.56995 3.15797 3.31639 3.35309 3.69829 3.74585 4.00652 4.06070 4.11355 4.22974 4.29964 4.38459 4.49891 4.50617 4.55294 4.66537 4.70877 4.77773 4.82022 4.84442 4.86777 4.91725 4.99809 5.01601 5.04240 5.04966 5.13799 5.14997 5.17693 5.23176 5.29107 5.33795 5.48162 5.58451 5.60687 5.63694 5.83713 5.89365 6.15321 6.30936 6.81307 6.95259 7.43144 8.91586 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022083 B = 0.003173 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.632150 B = 8823.690048 C = 9369.061069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.275 3.725 3 H 0.024 0.976 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.999 5.999 13 C 0.105 3.895 14 S 2.787 3.213 15 O -1.009 7.009 16 O -1.016 7.016 17 N -1.002 6.002 18 C 0.116 3.884 19 C -0.127 4.127 20 C -0.071 4.071 21 C -0.086 4.086 22 H 0.059 0.941 23 C -0.141 4.141 24 C 0.075 3.925 25 O -0.594 6.594 26 C -0.125 4.125 27 C 0.112 3.888 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.395 0.605 46 H 0.102 0.898 47 H 0.052 0.948 48 H 0.091 0.909 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.279 3.890 19.859 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.170 3.830 3 H 0.042 0.958 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.840 5.840 13 C -0.041 4.041 14 S 2.798 3.202 15 O -0.992 6.992 16 O -1.000 7.000 17 N -0.844 5.844 18 C -0.009 4.009 19 C -0.166 4.166 20 C -0.089 4.089 21 C -0.104 4.104 22 H 0.078 0.922 23 C -0.198 4.198 24 C -0.003 4.003 25 O -0.403 6.403 26 C -0.164 4.164 27 C -0.012 4.012 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.244 0.756 46 H 0.120 0.880 47 H 0.071 0.929 48 H 0.109 0.891 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.069 3.505 19.872 20.806 hybrid contribution 0.007 0.199 -1.506 1.519 sum -5.062 3.704 18.366 19.407 Atomic orbital electron populations 1.21893 0.96649 1.00183 1.00543 1.18377 0.92340 0.91192 0.81048 0.95840 1.21636 1.31791 1.13069 0.91695 0.92898 1.25604 0.95194 0.95719 1.01521 1.69953 1.37151 1.23511 1.24425 0.85696 0.78404 0.79119 0.78926 1.19130 1.20477 1.20665 1.57680 1.69974 1.21034 1.35327 1.21313 1.01577 0.80388 1.00782 1.01467 0.74025 0.72329 0.72341 1.93488 1.70055 1.61012 1.74694 1.93520 1.75530 1.57278 1.73707 1.58040 1.67337 1.24851 1.34122 1.21441 1.00191 0.80416 0.98892 1.21963 1.01366 0.99298 0.93991 1.21046 1.01179 0.94047 0.92661 1.21105 1.00222 0.93694 0.95401 0.92223 1.21782 1.01265 1.00210 0.96547 1.22374 0.98560 0.90585 0.88739 1.86416 1.75844 1.29583 1.48409 1.21984 1.00740 0.95731 0.97897 1.21687 1.01935 0.94810 0.82766 0.94382 0.91489 0.93964 0.92576 0.94355 0.90225 0.90325 0.91499 0.89614 0.88655 0.92915 0.89001 0.91831 0.93199 0.91894 0.92897 0.92374 0.75609 0.87990 0.92877 0.89060 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.95 71.98 0.64 -5.22 16 2 C 0.27 13.52 2.62 44.25 0.12 13.63 16 3 H 0.02 1.32 6.91 -2.39 -0.02 1.30 16 4 C -0.54 -29.71 8.37 25.60 0.21 -29.50 16 5 H 0.05 2.90 7.65 -2.91 -0.02 2.88 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -50.95 11.32 21.45 0.24 -50.71 16 8 Si 0.95 43.49 29.54 68.60 2.03 45.51 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 N -1.00 -41.53 3.12 -520.44 -1.62 -43.16 16 13 C 0.10 3.64 9.53 127.77 1.22 4.86 16 14 S 2.79 111.64 6.10 -56.49 -0.34 111.29 16 15 O -1.01 -41.94 15.80 -128.00 -2.02 -43.96 16 16 O -1.02 -49.41 15.28 -128.00 -1.96 -51.37 16 17 N -1.00 -29.31 3.35 -513.84 -1.72 -31.03 16 18 C 0.12 3.06 6.45 86.22 0.56 3.61 16 19 C -0.13 -2.60 5.04 30.53 0.15 -2.45 16 20 C -0.07 -1.16 1.74 -10.77 -0.02 -1.18 16 21 C -0.09 -1.36 2.21 -10.79 -0.02 -1.39 16 22 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 23 C -0.14 -1.99 8.74 71.98 0.63 -1.36 16 24 C 0.07 1.05 6.21 71.98 0.45 1.50 16 25 O -0.59 -9.27 13.20 -148.98 -1.97 -11.24 16 26 C -0.12 -2.24 5.04 30.67 0.15 -2.09 16 27 C 0.11 2.45 6.48 86.36 0.56 3.01 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 3.32 6.07 -2.39 -0.01 3.31 16 30 H 0.04 1.74 6.66 -2.39 -0.02 1.72 16 31 H 0.26 14.09 8.31 -92.70 -0.77 13.32 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 2.21 7.79 -2.39 -0.02 2.19 16 34 H 0.08 2.59 6.43 -2.39 -0.02 2.58 16 35 H 0.07 2.16 6.91 -2.39 -0.02 2.14 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.10 1.55 6.25 -2.39 -0.01 1.54 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.06 0.82 6.40 -2.38 -0.02 0.80 16 41 H 0.05 0.81 7.82 -2.39 -0.02 0.79 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.05 0.71 6.14 -2.39 -0.01 0.70 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.39 2.70 9.12 -74.06 -0.68 2.03 16 46 H 0.10 1.34 6.36 -2.39 -0.02 1.33 16 47 H 0.05 1.12 8.14 -2.38 -0.02 1.11 16 48 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.08 1.95 6.92 -2.39 -0.02 1.93 16 Total: -1.00 -71.66 382.87 -2.00 -73.66 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.27 Total: 16.03 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 5.10 Total: -15.04 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -3.10 Total: -124.89 kcal Atomic # 8 Polarization: -100.62 SS G_CDS: -5.94 Total: -106.57 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 111.64 SS G_CDS: -0.34 Total: 111.29 kcal Total: -71.66 -2.00 -73.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593643445.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.991 kcal (2) G-P(sol) polarization free energy of solvation -71.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds