Wall clock time and date at job start Tue Mar 31 2020 17:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47032 * 2 1 4 4 C 1.53004 * 109.46803 * 119.99567 * 2 1 3 5 5 N 1.46504 * 109.46928 * 294.99609 * 4 2 1 6 6 C 1.34777 * 119.99854 * 179.97438 * 5 4 2 7 7 O 1.21593 * 119.99953 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00097 * 180.27545 * 6 5 4 9 9 C 1.46500 * 120.00431 * 179.72742 * 8 6 5 10 10 H 1.09008 * 109.46846 * 325.00097 * 9 8 6 11 11 C 1.52998 * 109.47391 * 205.00423 * 9 8 6 12 12 C 1.53004 * 109.47475 * 64.99845 * 11 9 8 13 13 C 1.50694 * 109.47213 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00444 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99922 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99679 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99981 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47226 * 89.99924 * 17 15 13 19 19 H 1.48504 * 109.47206 * 209.99557 * 17 15 13 20 20 H 1.48504 * 109.47229 * 329.99795 * 17 15 13 21 21 C 1.50698 * 109.47266 * 84.99856 * 9 8 6 22 22 C 1.38234 * 119.99444 * 39.73431 * 21 9 8 23 23 C 1.38238 * 119.99505 * 179.79217 * 22 21 9 24 24 C 1.38236 * 120.00149 * 0.42955 * 23 22 21 25 25 C 1.38235 * 120.00016 * 359.82416 * 24 23 22 26 26 C 1.38230 * 120.00216 * 220.00161 * 21 9 8 27 27 C 1.50697 * 109.47031 * 239.98989 * 2 1 3 28 28 O 1.20823 * 120.00048 * 239.99738 * 27 2 1 29 29 O 1.34231 * 119.99755 * 60.00651 * 27 2 1 30 30 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46802 * 300.00666 * 1 2 3 32 32 H 1.08994 * 109.46769 * 60.00276 * 1 2 3 33 33 H 1.08998 * 109.47202 * 174.99867 * 4 2 1 34 34 H 1.08997 * 109.47419 * 54.99765 * 4 2 1 35 35 H 0.97000 * 120.00410 * 0.02562 * 5 4 2 36 36 H 0.97000 * 120.00112 * 359.73180 * 8 6 5 37 37 H 1.09000 * 109.47070 * 184.99798 * 11 9 8 38 38 H 1.08992 * 109.47139 * 304.99732 * 11 9 8 39 39 H 1.08996 * 109.46923 * 300.00526 * 12 11 9 40 40 H 1.09001 * 109.46769 * 59.99791 * 12 11 9 41 41 H 0.96996 * 119.99376 * 180.02562 * 16 15 13 42 42 H 1.07999 * 120.00365 * 359.97438 * 22 21 9 43 43 H 1.07999 * 119.99878 * 180.27635 * 23 22 21 44 44 H 1.08002 * 119.99861 * 179.83517 * 24 23 22 45 45 H 1.07990 * 120.00183 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.00467 * 359.97438 * 26 21 9 47 47 H 0.96700 * 117.00351 * 179.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6525 0.0356 2.4424 6 6 1.9955 -0.4132 3.6660 7 8 2.6270 -1.4461 3.7798 8 7 1.6342 0.2800 4.7639 9 6 2.0019 -0.2110 6.0943 10 1 1.9719 -1.3006 6.1005 11 6 1.0147 0.3323 7.1293 12 6 -0.3773 -0.2413 6.8566 13 6 -1.3497 0.2942 7.8757 14 1 -1.0090 0.9753 8.6415 15 6 -2.6743 -0.0861 7.8310 16 7 -3.0891 -0.9158 6.8987 17 14 -3.8795 0.5772 9.0946 18 1 -4.4820 1.8374 8.5903 19 1 -4.9508 -0.4239 9.3301 20 1 -3.1641 0.8455 10.3680 21 6 3.3940 0.2552 6.4347 22 6 3.7985 1.5318 6.0919 23 6 5.0740 1.9609 6.4081 24 6 5.9479 1.1103 7.0591 25 6 5.5451 -0.1681 7.3972 26 6 4.2681 -0.5957 7.0849 27 6 2.0324 -0.7106 -1.2303 28 8 2.7270 -1.6929 -1.1193 29 8 1.7082 -0.2521 -2.4495 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 3.1263 -0.7995 1.2058 34 1 1.6054 -1.7197 1.2954 35 1 1.1483 0.8594 2.3518 36 1 1.1306 1.1041 4.6732 37 1 1.3386 0.0406 8.1283 38 1 0.9792 1.4195 7.0618 39 1 -0.7011 0.0503 5.8576 40 1 -0.3417 -1.3287 6.9241 41 1 -4.0210 -1.1830 6.8671 42 1 3.1171 2.1949 5.5798 43 1 5.3885 2.9598 6.1442 44 1 6.9453 1.4447 7.3037 45 1 6.2279 -0.8327 7.9054 46 1 3.9534 -1.5944 7.3493 47 1 2.0542 -0.7409 -3.2088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594530225.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:25 Heat of formation + Delta-G solvation = -115.419292 kcal Electronic energy + Delta-G solvation = -28422.247440 eV Core-core repulsion = 24376.214661 eV Total energy + Delta-G solvation = -4046.032779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77339 -39.99653 -38.81882 -36.71902 -36.14419 -35.32998 -33.21133 -32.72672 -31.14041 -30.62704 -30.31887 -27.02436 -26.17953 -24.59655 -23.55015 -22.41387 -21.29959 -20.77156 -20.70680 -19.92031 -18.42234 -18.24430 -16.97458 -16.88337 -16.33701 -16.14483 -15.76485 -15.34191 -15.01186 -14.70863 -14.48749 -14.27182 -14.04836 -13.88334 -13.59670 -13.28848 -13.14405 -12.92349 -12.80789 -12.52917 -12.45685 -12.10585 -11.91283 -11.73265 -11.66285 -11.46413 -11.09930 -10.97914 -10.90965 -10.76607 -10.62573 -10.54584 -10.05579 -9.77992 -9.56663 -9.16552 -9.07020 -8.71115 -8.57162 -8.39646 -8.36730 -6.02823 -4.05798 1.56950 1.61916 1.87103 2.43541 3.13951 3.28984 3.36208 3.39354 3.53097 4.01210 4.20558 4.42922 4.49103 4.51977 4.69360 5.00820 5.06117 5.08656 5.17065 5.32174 5.32888 5.39421 5.43053 5.60842 5.64265 5.70225 5.77782 5.84264 5.86210 5.92942 6.15063 6.16372 6.22715 6.39029 6.50947 6.58468 6.67180 6.70076 6.78378 6.96131 6.99746 7.18565 7.22501 7.54638 7.64416 7.76381 7.96796 8.26728 8.38017 8.89999 9.01471 9.58552 11.07885 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.006966 B = 0.003536 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4018.374601 B = 7917.761438 C =11291.126473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.116 0.884 4 C 0.155 3.845 5 N -0.750 5.750 6 C 0.709 3.291 7 O -0.588 6.588 8 N -0.725 5.725 9 C 0.200 3.800 10 H 0.094 0.906 11 C -0.112 4.112 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.078 4.078 22 C -0.106 4.106 23 C -0.125 4.125 24 C -0.131 4.131 25 C -0.122 4.122 26 C -0.106 4.106 27 C 0.488 3.512 28 O -0.507 6.507 29 O -0.515 6.515 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.395 0.605 36 H 0.397 0.603 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.019 0.981 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.122 0.878 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.419 6.490 -13.503 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.134 0.866 4 C 0.031 3.969 5 N -0.407 5.407 6 C 0.409 3.591 7 O -0.466 6.466 8 N -0.379 5.379 9 C 0.095 3.905 10 H 0.112 0.888 11 C -0.150 4.150 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.079 4.079 22 C -0.125 4.125 23 C -0.143 4.143 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.124 4.124 27 C 0.329 3.671 28 O -0.394 6.394 29 O -0.327 6.327 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.229 0.771 36 H 0.231 0.769 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 12.879 5.351 -13.078 19.119 hybrid contribution -0.977 0.808 0.009 1.268 sum 11.902 6.159 -13.069 18.719 Atomic orbital electron populations 1.21832 0.90966 1.03845 1.03832 1.21171 0.99189 1.01355 0.89708 0.86608 1.20880 1.00634 0.94801 0.80626 1.44946 1.62260 1.28912 1.04590 1.15831 0.79717 0.83394 0.80203 1.90921 1.45373 1.24605 1.85670 1.45101 1.59969 1.28096 1.04704 1.19984 0.89582 0.99851 0.81089 0.88826 1.21979 0.96616 1.00040 0.96397 1.19082 0.88743 0.96284 0.97056 1.21238 0.93453 1.27677 1.13699 0.92705 1.25014 0.98481 0.95110 0.95742 1.69973 1.16078 1.33680 1.33451 0.86625 0.80966 0.78617 0.81965 1.20732 1.21259 1.19889 1.20455 0.96448 0.93994 0.97016 1.20883 0.95984 0.95651 0.99939 1.21057 0.94205 0.99384 0.99680 1.21043 0.99373 0.94432 1.00079 1.21075 0.96229 0.96167 1.00500 1.21041 0.93371 0.99543 0.98461 1.23144 0.76840 0.82420 0.84678 1.90780 1.35532 1.25922 1.87202 1.84511 1.72343 1.59047 1.16795 0.91468 0.90373 0.90898 0.90669 0.90537 0.77083 0.76920 0.91441 0.92604 0.96303 0.96538 0.93030 0.86565 0.86644 0.86699 0.86421 0.85991 0.72968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.00 37.16 0.33 -0.77 16 2 C -0.09 -0.77 2.86 -91.77 -0.26 -1.04 16 3 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.16 1.83 4.41 -4.04 -0.02 1.81 16 5 N -0.75 -9.06 5.29 -65.22 -0.34 -9.40 16 6 C 0.71 11.68 8.52 -86.92 -0.74 10.94 16 7 O -0.59 -12.18 16.01 5.28 0.08 -12.10 16 8 N -0.73 -11.23 3.76 -59.81 -0.23 -11.46 16 9 C 0.20 3.45 2.17 -69.08 -0.15 3.30 16 10 H 0.09 1.84 7.44 -51.92 -0.39 1.45 16 11 C -0.11 -2.15 4.67 -26.73 -0.12 -2.27 16 12 C 0.03 0.62 4.86 -27.88 -0.14 0.48 16 13 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 21 C -0.08 -1.23 4.91 -104.63 -0.51 -1.74 16 22 C -0.11 -1.50 9.33 -39.58 -0.37 -1.87 16 23 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 24 C -0.13 -1.63 10.05 -39.58 -0.40 -2.02 16 25 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 26 C -0.11 -1.60 9.67 -39.58 -0.38 -1.99 16 27 C 0.49 4.55 7.63 36.00 0.27 4.82 16 28 O -0.51 -6.59 16.68 -18.75 -0.31 -6.91 16 29 O -0.51 -3.37 13.33 -39.26 -0.52 -3.89 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.57 7.18 -51.93 -0.37 0.19 16 32 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 33 H 0.08 1.00 7.96 -51.93 -0.41 0.58 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.40 3.53 7.67 -40.82 -0.31 3.22 16 36 H 0.40 5.29 8.62 -40.82 -0.35 4.94 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.47 7.75 -51.93 -0.40 0.07 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.12 1.47 7.71 -52.49 -0.40 1.07 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 46 H 0.12 1.77 8.04 -52.49 -0.42 1.35 16 47 H 0.41 1.08 9.10 45.56 0.41 1.49 16 LS Contribution 400.60 15.07 6.04 6.04 Total: -1.00 -36.01 400.60 -9.68 -45.69 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.42 Total: 8.64 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.69 Total: -7.31 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.17 Total: -46.30 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.75 Total: -22.89 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.01 -9.68 -45.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594530225.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.729 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds