Wall clock time and date at job start Tue Mar 31 2020 17:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47032 * 2 1 4 4 C 1.53004 * 109.46803 * 119.99567 * 2 1 3 5 5 N 1.46504 * 109.46928 * 294.99609 * 4 2 1 6 6 C 1.34777 * 119.99854 * 179.97438 * 5 4 2 7 7 O 1.21593 * 119.99953 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00097 * 180.27545 * 6 5 4 9 9 C 1.46500 * 120.00431 * 179.72742 * 8 6 5 10 10 H 1.09008 * 109.46846 * 325.00097 * 9 8 6 11 11 C 1.52998 * 109.47391 * 205.00423 * 9 8 6 12 12 C 1.53004 * 109.47475 * 64.99845 * 11 9 8 13 13 C 1.50694 * 109.47213 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00444 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99922 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99679 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99981 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47226 * 89.99924 * 17 15 13 19 19 H 1.48504 * 109.47206 * 209.99557 * 17 15 13 20 20 H 1.48504 * 109.47229 * 329.99795 * 17 15 13 21 21 C 1.50698 * 109.47266 * 84.99856 * 9 8 6 22 22 C 1.38234 * 119.99444 * 39.73431 * 21 9 8 23 23 C 1.38238 * 119.99505 * 179.79217 * 22 21 9 24 24 C 1.38236 * 120.00149 * 0.42955 * 23 22 21 25 25 C 1.38235 * 120.00016 * 359.82416 * 24 23 22 26 26 C 1.38230 * 120.00216 * 220.00161 * 21 9 8 27 27 C 1.50697 * 109.47031 * 239.98989 * 2 1 3 28 28 O 1.20823 * 120.00048 * 239.99738 * 27 2 1 29 29 O 1.34231 * 119.99755 * 60.00651 * 27 2 1 30 30 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46802 * 300.00666 * 1 2 3 32 32 H 1.08994 * 109.46769 * 60.00276 * 1 2 3 33 33 H 1.08998 * 109.47202 * 174.99867 * 4 2 1 34 34 H 1.08997 * 109.47419 * 54.99765 * 4 2 1 35 35 H 0.97000 * 120.00410 * 0.02562 * 5 4 2 36 36 H 0.97000 * 120.00112 * 359.73180 * 8 6 5 37 37 H 1.09000 * 109.47070 * 184.99798 * 11 9 8 38 38 H 1.08992 * 109.47139 * 304.99732 * 11 9 8 39 39 H 1.08996 * 109.46923 * 300.00526 * 12 11 9 40 40 H 1.09001 * 109.46769 * 59.99791 * 12 11 9 41 41 H 0.96996 * 119.99376 * 180.02562 * 16 15 13 42 42 H 1.07999 * 120.00365 * 359.97438 * 22 21 9 43 43 H 1.07999 * 119.99878 * 180.27635 * 23 22 21 44 44 H 1.08002 * 119.99861 * 179.83517 * 24 23 22 45 45 H 1.07990 * 120.00183 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.00467 * 359.97438 * 26 21 9 47 47 H 0.96700 * 117.00351 * 179.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6525 0.0356 2.4424 6 6 1.9955 -0.4132 3.6660 7 8 2.6270 -1.4461 3.7798 8 7 1.6342 0.2800 4.7639 9 6 2.0019 -0.2110 6.0943 10 1 1.9719 -1.3006 6.1005 11 6 1.0147 0.3323 7.1293 12 6 -0.3773 -0.2413 6.8566 13 6 -1.3497 0.2942 7.8757 14 1 -1.0090 0.9753 8.6415 15 6 -2.6743 -0.0861 7.8310 16 7 -3.0891 -0.9158 6.8987 17 14 -3.8795 0.5772 9.0946 18 1 -4.4820 1.8374 8.5903 19 1 -4.9508 -0.4239 9.3301 20 1 -3.1641 0.8455 10.3680 21 6 3.3940 0.2552 6.4347 22 6 3.7985 1.5318 6.0919 23 6 5.0740 1.9609 6.4081 24 6 5.9479 1.1103 7.0591 25 6 5.5451 -0.1681 7.3972 26 6 4.2681 -0.5957 7.0849 27 6 2.0324 -0.7106 -1.2303 28 8 2.7270 -1.6929 -1.1193 29 8 1.7082 -0.2521 -2.4495 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 3.1263 -0.7995 1.2058 34 1 1.6054 -1.7197 1.2954 35 1 1.1483 0.8594 2.3518 36 1 1.1306 1.1041 4.6732 37 1 1.3386 0.0406 8.1283 38 1 0.9792 1.4195 7.0618 39 1 -0.7011 0.0503 5.8576 40 1 -0.3417 -1.3287 6.9241 41 1 -4.0210 -1.1830 6.8671 42 1 3.1171 2.1949 5.5798 43 1 5.3885 2.9598 6.1442 44 1 6.9453 1.4447 7.3037 45 1 6.2279 -0.8327 7.9054 46 1 3.9534 -1.5944 7.3493 47 1 2.0542 -0.7409 -3.2088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594530225.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:24 Heat of formation + Delta-G solvation = -139.764989 kcal Electronic energy + Delta-G solvation = -28423.303149 eV Core-core repulsion = 24376.214661 eV Total energy + Delta-G solvation = -4047.088488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.62777 -41.18347 -39.93614 -37.62010 -37.13384 -36.59912 -35.11600 -33.90618 -32.50042 -31.81305 -31.63178 -28.37970 -27.36353 -25.62058 -25.02821 -23.49023 -22.61149 -22.22654 -21.58301 -21.24556 -19.52949 -19.09051 -18.50939 -17.91712 -17.72851 -17.03825 -16.93615 -16.58021 -16.38623 -16.03955 -15.77311 -15.44032 -15.14378 -15.03976 -14.56877 -14.49671 -14.45888 -14.19801 -13.97420 -13.82319 -13.67056 -13.35789 -13.18915 -12.84047 -12.66457 -12.52684 -12.48594 -12.41376 -12.18715 -12.11579 -11.88629 -11.75585 -11.55144 -11.40658 -11.31539 -11.18280 -10.52812 -10.37306 -9.82807 -9.73724 -9.53353 -8.16414 -6.27267 0.49191 0.57115 1.13930 1.41997 1.43521 1.51444 1.54119 2.17732 2.23992 2.43124 2.94583 3.17033 3.39139 3.40250 3.77198 3.86148 4.01654 4.05100 4.19403 4.27264 4.33531 4.37695 4.39592 4.60854 4.66548 4.69580 4.69911 4.80479 4.83332 4.93030 5.01746 5.12885 5.20993 5.22515 5.24996 5.40937 5.48032 5.54590 5.58068 5.63107 5.66013 5.71607 5.83481 5.88424 6.03789 6.18322 6.27129 6.89826 6.94719 7.11666 7.41963 7.61488 8.94592 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.006966 B = 0.003536 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4018.374601 B = 7917.761438 C =11291.126473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 H 0.150 0.850 4 C 0.158 3.842 5 N -0.729 5.729 6 C 0.703 3.297 7 O -0.635 6.635 8 N -0.717 5.717 9 C 0.212 3.788 10 H 0.058 0.942 11 C -0.093 4.093 12 C 0.033 3.967 13 C -0.539 4.539 14 H 0.062 0.938 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.961 3.039 18 H -0.269 1.269 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.098 4.098 22 C -0.114 4.114 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.126 4.126 26 C -0.131 4.131 27 C 0.495 3.505 28 O -0.552 6.552 29 O -0.503 6.503 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.414 0.586 36 H 0.409 0.591 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.007 0.993 40 H -0.023 1.023 41 H 0.261 0.739 42 H 0.130 0.870 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.139 0.861 46 H 0.112 0.888 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.036 9.782 -13.693 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 H 0.167 0.833 4 C 0.033 3.967 5 N -0.387 5.387 6 C 0.403 3.597 7 O -0.517 6.517 8 N -0.372 5.372 9 C 0.106 3.894 10 H 0.076 0.924 11 C -0.131 4.131 12 C -0.004 4.004 13 C -0.577 4.577 14 H 0.080 0.920 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.786 3.214 18 H -0.195 1.195 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.099 4.099 22 C -0.132 4.132 23 C -0.143 4.143 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.150 4.150 27 C 0.338 3.662 28 O -0.443 6.443 29 O -0.317 6.317 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.252 0.748 36 H 0.245 0.755 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.025 0.975 40 H -0.005 1.005 41 H 0.070 0.930 42 H 0.147 0.853 43 H 0.164 0.836 44 H 0.165 0.835 45 H 0.157 0.843 46 H 0.130 0.870 47 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 13.471 8.709 -13.310 20.844 hybrid contribution -1.128 -0.233 0.003 1.151 sum 12.343 8.477 -13.307 20.032 Atomic orbital electron populations 1.21835 0.90112 1.03211 1.05042 1.21096 0.99590 1.02194 0.87401 0.83280 1.20792 0.99611 0.94231 0.82053 1.44715 1.61385 1.29278 1.03275 1.16045 0.79468 0.82885 0.81312 1.90888 1.47557 1.26752 1.86471 1.44927 1.59917 1.28337 1.04005 1.19583 0.90681 0.97760 0.81354 0.92404 1.21705 0.93938 1.00652 0.96836 1.18929 0.91581 0.93880 0.95999 1.21677 0.94206 1.27618 1.14196 0.92022 1.25922 1.00597 0.95322 0.97763 1.70113 1.16549 1.35090 1.35399 0.85513 0.78314 0.78127 0.79475 1.19459 1.21323 1.18964 1.20298 0.95472 0.95325 0.98815 1.21087 0.97189 0.94947 0.99994 1.21448 0.93370 1.00770 0.98678 1.21476 1.00720 0.93715 0.98725 1.21368 0.95537 0.97245 1.00264 1.21183 0.94732 0.99481 0.99570 1.23252 0.75784 0.81529 0.85637 1.90778 1.37730 1.27913 1.87871 1.84462 1.71796 1.58839 1.16569 0.93076 0.89905 0.88895 0.92288 0.93312 0.74846 0.75472 0.91834 0.90793 0.97495 1.00502 0.92983 0.85255 0.83584 0.83507 0.84287 0.86971 0.70807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.00 71.98 0.65 -1.30 16 2 C -0.08 -1.25 2.86 -11.54 -0.03 -1.29 16 3 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.16 3.82 4.41 86.38 0.38 4.20 16 5 N -0.73 -17.61 5.29 -478.52 -2.53 -20.14 16 6 C 0.70 24.01 8.52 179.06 1.53 25.53 16 7 O -0.64 -27.95 16.01 -4.01 -0.06 -28.01 16 8 N -0.72 -22.75 3.76 -461.41 -1.74 -24.48 16 9 C 0.21 7.66 2.17 44.24 0.10 7.75 16 10 H 0.06 2.49 7.44 -2.38 -0.02 2.47 16 11 C -0.09 -3.65 4.67 30.59 0.14 -3.51 16 12 C 0.03 1.68 4.86 29.85 0.15 1.83 16 13 C -0.54 -29.55 9.11 25.60 0.23 -29.32 16 14 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 15 C 0.00 0.10 5.46 84.66 0.46 0.56 16 16 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 17 Si 0.96 43.31 29.54 68.60 2.03 45.33 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 21 C -0.10 -3.12 4.91 -19.87 -0.10 -3.22 16 22 C -0.11 -3.04 9.33 22.27 0.21 -2.83 16 23 C -0.12 -2.79 10.05 22.27 0.22 -2.57 16 24 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 25 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 26 C -0.13 -4.07 9.67 22.27 0.22 -3.86 16 27 C 0.49 8.78 7.63 71.23 0.54 9.32 16 28 O -0.55 -14.66 16.68 21.97 0.37 -14.29 16 29 O -0.50 -5.50 13.33 -51.43 -0.69 -6.19 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.05 7.18 -2.39 -0.02 1.03 16 32 H 0.09 0.92 8.11 -2.39 -0.02 0.90 16 33 H 0.06 1.64 7.96 -2.39 -0.02 1.62 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.41 6.81 7.67 -92.71 -0.71 6.10 16 36 H 0.41 10.72 8.62 -92.71 -0.80 9.93 16 37 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 40 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 41 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 42 H 0.13 2.99 7.71 -2.91 -0.02 2.97 16 43 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 44 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.14 2.79 8.06 -2.92 -0.02 2.76 16 46 H 0.11 3.54 8.04 -2.91 -0.02 3.52 16 47 H 0.43 1.40 9.10 -74.06 -0.67 0.72 16 Total: -1.00 -81.54 400.60 1.62 -79.92 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -1.18 Total: 27.58 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 5.14 Total: -4.22 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -3.98 Total: -100.12 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -0.38 Total: -48.49 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -81.54 1.62 -79.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594530225.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.847 kcal (2) G-P(sol) polarization free energy of solvation -81.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds