Wall clock time and date at job start Tue Mar 31 2020 17:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46821 * 2 1 4 4 C 1.53002 * 109.47364 * 119.99686 * 2 1 3 5 5 N 1.46496 * 109.47095 * 295.00181 * 4 2 1 6 6 C 1.34780 * 120.00056 * 179.97438 * 5 4 2 7 7 O 1.21589 * 119.99401 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00036 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99912 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.47049 * 35.00861 * 9 8 6 11 11 C 1.53005 * 109.47170 * 155.00263 * 9 8 6 12 12 C 1.53004 * 109.46983 * 295.00551 * 11 9 8 13 13 C 1.50695 * 109.46637 * 179.97438 * 12 11 9 14 14 H 1.08004 * 120.00546 * 0.27598 * 13 12 11 15 15 C 1.37885 * 119.99721 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00035 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99853 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47093 * 60.00328 * 17 15 13 19 19 H 1.48495 * 109.47002 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47239 * 300.00048 * 17 15 13 21 21 C 1.50696 * 109.47666 * 275.00851 * 9 8 6 22 22 C 1.38241 * 119.99748 * 319.72362 * 21 9 8 23 23 C 1.38231 * 120.00006 * 179.78971 * 22 21 9 24 24 C 1.38237 * 119.99975 * 0.44300 * 23 22 21 25 25 C 1.38232 * 120.00146 * 359.81024 * 24 23 22 26 26 C 1.38230 * 120.00461 * 140.00057 * 21 9 8 27 27 C 1.50703 * 109.47320 * 240.00354 * 2 1 3 28 28 O 1.20827 * 119.99455 * 240.00110 * 27 2 1 29 29 O 1.34224 * 120.00357 * 59.99225 * 27 2 1 30 30 H 1.09001 * 109.46821 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47404 * 299.99979 * 1 2 3 32 32 H 1.08996 * 109.47229 * 60.00591 * 1 2 3 33 33 H 1.09004 * 109.47096 * 175.00339 * 4 2 1 34 34 H 1.09003 * 109.46407 * 55.00425 * 4 2 1 35 35 H 0.97006 * 120.00098 * 0.02562 * 5 4 2 36 36 H 0.96994 * 120.00442 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.46931 * 175.00576 * 11 9 8 38 38 H 1.08997 * 109.46785 * 55.00056 * 11 9 8 39 39 H 1.08992 * 109.47421 * 59.99948 * 12 11 9 40 40 H 1.08997 * 109.46955 * 299.99401 * 12 11 9 41 41 H 0.97000 * 119.99706 * 179.97438 * 16 15 13 42 42 H 1.08003 * 119.99756 * 0.02562 * 22 21 9 43 43 H 1.07999 * 119.99887 * 180.27392 * 23 22 21 44 44 H 1.07997 * 119.99961 * 179.83876 * 24 23 22 45 45 H 1.07994 * 120.00483 * 180.02562 * 25 24 23 46 46 H 1.08002 * 120.00332 * 359.97438 * 26 21 9 47 47 H 0.96698 * 117.00318 * 180.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6525 0.0354 2.4423 6 6 1.9957 -0.4134 3.6660 7 8 2.6273 -1.4462 3.7795 8 7 1.6395 0.2829 4.7635 9 6 2.0121 -0.2054 6.0936 10 1 2.9890 -0.6863 6.0436 11 6 2.0722 0.9709 7.0703 12 6 3.1990 1.9198 6.6571 13 6 3.2577 3.0786 7.6187 14 1 2.5639 3.1305 8.4449 15 6 4.2012 4.0694 7.4475 16 7 5.0495 4.0034 6.4447 17 14 4.2735 5.5062 8.6392 18 1 4.5308 4.9990 10.0110 19 1 5.3672 6.4272 8.2382 20 1 2.9798 6.2348 8.6152 21 6 0.9858 -1.2011 6.5690 22 6 -0.3576 -0.9749 6.3336 23 6 -1.2987 -1.8905 6.7657 24 6 -0.8974 -3.0277 7.4414 25 6 0.4455 -3.2514 7.6814 26 6 1.3870 -2.3379 7.2454 27 6 2.0324 -0.7103 -1.2305 28 8 2.7270 -1.6927 -1.1196 29 8 1.7081 -0.2518 -2.4496 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 3.1264 -0.7993 1.2056 34 1 1.6054 -1.7198 1.2951 35 1 1.1482 0.8592 2.3517 36 1 1.1360 1.1069 4.6729 37 1 2.2619 0.5980 8.0768 38 1 1.1225 1.5056 7.0539 39 1 3.0093 2.2927 5.6506 40 1 4.1486 1.3851 6.6735 41 1 5.7130 4.7006 6.3241 42 1 -0.6714 -0.0848 5.8086 43 1 -2.3478 -1.7159 6.5779 44 1 -1.6329 -3.7417 7.7813 45 1 0.7591 -4.1400 8.2089 46 1 2.4362 -2.5127 7.4329 47 1 2.0535 -0.7410 -3.2089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594530226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:27 Heat of formation + Delta-G solvation = -139.870865 kcal Electronic energy + Delta-G solvation = -28419.966915 eV Core-core repulsion = 24372.873836 eV Total energy + Delta-G solvation = -4047.093079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62926 -41.18428 -39.93561 -37.62129 -37.13726 -36.59936 -35.11787 -33.90409 -32.49990 -31.81141 -31.62938 -28.37677 -27.35064 -25.62132 -25.02833 -23.48822 -22.60951 -22.22843 -21.58170 -21.24812 -19.53074 -19.09405 -18.50762 -17.93739 -17.68200 -17.15618 -16.83973 -16.58777 -16.41237 -15.96436 -15.81060 -15.50366 -15.14425 -14.98046 -14.54647 -14.53574 -14.45585 -14.19093 -13.97819 -13.78354 -13.68334 -13.36429 -13.17852 -12.81762 -12.66108 -12.52653 -12.47489 -12.44189 -12.17982 -12.11882 -11.88508 -11.74911 -11.55119 -11.40821 -11.31533 -11.19620 -10.52798 -10.37335 -9.82708 -9.73435 -9.53173 -8.16474 -6.27614 0.49449 0.57463 1.13844 1.42374 1.44695 1.51406 1.52476 2.17875 2.23581 2.43060 2.94875 3.16876 3.39113 3.40443 3.78352 3.86225 4.01833 4.05487 4.19752 4.27307 4.33823 4.37606 4.39805 4.61648 4.67201 4.69776 4.70113 4.80833 4.85606 4.93748 5.01878 5.12948 5.21175 5.22574 5.25564 5.40900 5.48078 5.54108 5.57696 5.63415 5.66346 5.71507 5.83500 5.88076 6.03800 6.18620 6.26781 6.89432 6.94267 7.11656 7.41679 7.61458 8.94342 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007068 B = 0.003458 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3960.342647 B = 8095.978383 C =11242.193801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.140 0.860 4 C 0.159 3.841 5 N -0.729 5.729 6 C 0.703 3.297 7 O -0.636 6.636 8 N -0.717 5.717 9 C 0.212 3.788 10 H 0.057 0.943 11 C -0.093 4.093 12 C 0.033 3.967 13 C -0.540 4.540 14 H 0.062 0.938 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.961 3.039 18 H -0.271 1.271 19 H -0.287 1.287 20 H -0.263 1.263 21 C -0.098 4.098 22 C -0.113 4.113 23 C -0.124 4.124 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.131 4.131 27 C 0.494 3.506 28 O -0.553 6.553 29 O -0.503 6.503 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.414 0.586 36 H 0.409 0.591 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.006 0.994 40 H -0.024 1.024 41 H 0.262 0.738 42 H 0.130 0.870 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.139 0.861 46 H 0.112 0.888 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.759 -8.169 -11.973 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.158 0.842 4 C 0.034 3.966 5 N -0.387 5.387 6 C 0.403 3.597 7 O -0.517 6.517 8 N -0.372 5.372 9 C 0.106 3.894 10 H 0.076 0.924 11 C -0.131 4.131 12 C -0.004 4.004 13 C -0.578 4.578 14 H 0.080 0.920 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.786 3.214 18 H -0.196 1.196 19 H -0.213 1.213 20 H -0.187 1.187 21 C -0.099 4.099 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.150 4.150 27 C 0.337 3.663 28 O -0.443 6.443 29 O -0.317 6.317 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.252 0.748 36 H 0.245 0.755 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.025 0.975 40 H -0.005 1.005 41 H 0.070 0.930 42 H 0.148 0.852 43 H 0.164 0.836 44 H 0.165 0.835 45 H 0.157 0.843 46 H 0.130 0.870 47 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -16.010 -9.046 -11.613 21.749 hybrid contribution 0.917 0.973 -0.115 1.342 sum -15.092 -8.074 -11.728 20.749 Atomic orbital electron populations 1.21818 0.89218 1.03525 1.05147 1.21121 1.00380 1.01813 0.87392 0.84226 1.20783 0.99307 0.94494 0.82050 1.44715 1.61479 1.29207 1.03251 1.16044 0.79369 0.82992 0.81301 1.90886 1.47147 1.27146 1.86492 1.44924 1.60422 1.27782 1.04048 1.19582 0.95287 0.93357 0.81166 0.92449 1.21708 1.00103 0.94061 0.97252 1.18927 0.92439 0.93135 0.95896 1.21659 1.16454 1.07248 1.12469 0.91964 1.25931 0.95173 1.01278 0.97222 1.70107 1.19960 1.35273 1.31867 0.85565 0.78034 0.78732 0.79089 1.19625 1.21253 1.18742 1.20291 0.95252 0.95677 0.98671 1.21087 0.91837 1.00173 1.00069 1.21446 1.00299 0.94277 0.98199 1.21475 0.95997 0.98192 0.98964 1.21365 0.93522 0.99381 1.00150 1.21182 1.00063 0.94580 0.99163 1.23274 0.75814 0.81514 0.85657 1.90780 1.37610 1.28069 1.87878 1.84459 1.71787 1.58855 1.16574 0.92344 0.89430 0.89138 0.93383 0.92256 0.74848 0.75468 0.91818 0.90754 0.97538 1.00548 0.92976 0.85222 0.83553 0.83509 0.84313 0.87019 0.70817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.00 71.98 0.65 -0.78 16 2 C -0.09 -1.33 2.86 -11.54 -0.03 -1.36 16 3 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.16 3.84 4.41 86.38 0.38 4.23 16 5 N -0.73 -17.63 5.29 -478.53 -2.53 -20.16 16 6 C 0.70 24.03 8.52 179.06 1.53 25.56 16 7 O -0.64 -27.98 16.01 -4.00 -0.06 -28.04 16 8 N -0.72 -22.76 3.78 -461.41 -1.75 -24.50 16 9 C 0.21 7.65 2.17 44.25 0.10 7.75 16 10 H 0.06 2.48 7.44 -2.38 -0.02 2.46 16 11 C -0.09 -3.65 4.67 30.60 0.14 -3.51 16 12 C 0.03 1.68 4.86 29.85 0.15 1.83 16 13 C -0.54 -29.70 9.11 25.60 0.23 -29.47 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.00 0.10 5.46 84.66 0.46 0.57 16 16 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 17 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 21 C -0.10 -3.10 4.91 -19.87 -0.10 -3.20 16 22 C -0.11 -2.99 9.32 22.27 0.21 -2.79 16 23 C -0.12 -2.75 10.05 22.27 0.22 -2.52 16 24 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 25 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 26 C -0.13 -4.07 9.67 22.27 0.22 -3.86 16 27 C 0.49 8.94 7.63 71.24 0.54 9.48 16 28 O -0.55 -14.90 16.68 21.96 0.37 -14.54 16 29 O -0.50 -5.66 13.33 -51.35 -0.68 -6.35 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.70 7.18 -2.39 -0.02 0.68 16 32 H 0.09 0.67 8.11 -2.39 -0.02 0.65 16 33 H 0.05 1.46 7.96 -2.38 -0.02 1.44 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.41 6.82 7.67 -92.70 -0.71 6.10 16 36 H 0.41 10.73 8.62 -92.71 -0.80 9.93 16 37 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.01 0.33 7.75 -2.39 -0.02 0.31 16 40 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 41 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.13 2.96 7.73 -2.91 -0.02 2.94 16 43 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 44 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 46 H 0.11 3.53 8.04 -2.91 -0.02 3.50 16 47 H 0.43 1.54 9.10 -74.06 -0.67 0.86 16 Total: -1.00 -81.93 400.63 1.61 -80.31 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -1.18 Total: 27.25 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 5.14 Total: -3.57 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -3.99 Total: -100.46 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -0.38 Total: -48.93 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -81.93 1.61 -80.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594530226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.557 kcal (2) G-P(sol) polarization free energy of solvation -81.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds