Wall clock time and date at job start Tue Mar 31 2020 18:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47282 * 2 1 4 4 C 1.50701 * 109.46872 * 240.00357 * 2 1 3 5 5 O 1.21303 * 119.99681 * 245.98823 * 4 2 1 6 6 N 1.34772 * 120.00481 * 65.98583 * 4 2 1 7 7 C 1.46509 * 119.99792 * 6.25243 * 6 4 2 8 8 C 1.50702 * 109.46893 * 86.77669 * 7 6 4 9 9 H 1.08000 * 119.99942 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99826 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00241 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99807 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47351 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47510 * 119.99903 * 12 10 8 15 15 H 1.48507 * 109.47001 * 240.00103 * 12 10 8 16 16 C 1.40102 * 120.00255 * 186.25379 * 6 4 2 17 17 C 1.38838 * 120.01516 * 7.77022 * 16 6 4 18 18 C 1.38138 * 120.03348 * 179.77239 * 17 16 6 19 19 C 1.38709 * 120.15852 * 0.56858 * 18 17 16 20 20 C 1.38984 * 119.93781 * 359.61864 * 19 18 17 21 21 C 1.38650 * 119.88443 * 0.12475 * 20 19 18 22 22 O 1.36115 * 120.78563 * 180.26614 * 20 19 18 23 23 C 1.43165 * 116.73315 * 342.80464 * 22 20 19 24 24 C 1.53466 * 108.24243 * 46.18881 * 23 22 20 25 25 O 1.36212 * 119.31502 * 179.53857 * 19 18 17 26 26 N 1.46895 * 109.47359 * 120.00208 * 2 1 3 27 27 C 1.46904 * 110.99680 * 295.00077 * 26 2 1 28 28 C 1.46900 * 110.99830 * 58.94861 * 26 2 1 29 29 H 1.08999 * 109.46746 * 186.05447 * 1 2 3 30 30 H 1.08996 * 109.46587 * 306.05352 * 1 2 3 31 31 H 1.08999 * 109.46990 * 66.04879 * 1 2 3 32 32 H 1.09000 * 109.47032 * 206.77727 * 7 6 4 33 33 H 1.08995 * 109.47123 * 326.77854 * 7 6 4 34 34 H 0.97001 * 119.99798 * 179.97438 * 11 10 8 35 35 H 1.07996 * 119.98622 * 0.04724 * 17 16 6 36 36 H 1.07997 * 119.91593 * 180.25668 * 18 17 16 37 37 H 1.07998 * 119.99264 * 179.97438 * 21 20 19 38 38 H 1.08994 * 109.70839 * 165.87516 * 23 22 20 39 39 H 1.08994 * 109.70740 * 286.50580 * 23 22 20 40 40 H 1.09004 * 109.71506 * 59.92392 * 24 23 22 41 41 H 1.09002 * 109.71284 * 180.55191 * 24 23 22 42 42 H 1.08995 * 109.47459 * 60.00099 * 27 26 2 43 43 H 1.09000 * 109.46959 * 179.97438 * 27 26 2 44 44 H 1.08998 * 109.47015 * 299.99078 * 27 26 2 45 45 H 1.09002 * 109.46990 * 60.00410 * 28 26 2 46 46 H 1.08999 * 109.46948 * 179.97438 * 28 26 2 47 47 H 1.08998 * 109.47764 * 300.00284 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.6375 -1.7561 -1.1226 6 7 1.8092 -0.1839 -2.4509 7 6 1.2008 1.1430 -2.5762 8 6 2.2771 2.1964 -2.5195 9 1 3.3108 1.9064 -2.4024 10 6 1.9421 3.5302 -2.6182 11 7 0.6835 3.8832 -2.7624 12 14 3.2762 4.8358 -2.5487 13 1 4.5998 4.1828 -2.3838 14 1 3.2653 5.6223 -3.8082 15 1 3.0242 5.7402 -1.3981 16 6 2.1588 -0.9054 -3.5998 17 6 2.5840 -2.2226 -3.4901 18 6 2.9244 -2.9359 -4.6231 19 6 2.8540 -2.3358 -5.8717 20 6 2.4325 -1.0162 -5.9843 21 6 2.0859 -0.3023 -4.8474 22 8 2.3518 -0.4121 -7.2013 23 6 3.0595 -1.0360 -8.2782 24 6 2.7630 -2.5413 -8.2396 25 8 3.2027 -3.0522 -6.9765 26 7 2.0198 -0.6925 1.1993 27 6 1.6488 0.0392 2.4180 28 6 1.5283 -2.0761 1.2459 29 1 -0.3633 -1.0219 0.1084 30 1 -0.3632 0.6048 0.8308 31 1 -0.3633 0.4172 -0.9392 32 1 0.6739 1.2128 -3.5278 33 1 0.4968 1.2986 -1.7587 34 1 0.4478 4.8216 -2.8315 35 1 2.6444 -2.6912 -2.5190 36 1 3.2508 -3.9616 -4.5359 37 1 1.7585 0.7233 -4.9328 38 1 2.7246 -0.6197 -9.2282 39 1 4.1301 -0.8691 -8.1600 40 1 1.6916 -2.7080 -8.3508 41 1 3.2991 -3.0424 -9.0455 42 1 0.5634 0.1176 2.4785 43 1 2.0232 -0.4955 3.2909 44 1 2.0843 1.0379 2.3889 45 1 1.8762 -2.6150 0.3646 46 1 1.9061 -2.5658 2.1434 47 1 0.4385 -2.0742 1.2639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602092736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:33 Heat of formation + Delta-G solvation = -36.451046 kcal Electronic energy + Delta-G solvation = -30279.103830 eV Core-core repulsion = 26236.495370 eV Total energy + Delta-G solvation = -4042.608459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.99063 -40.23343 -37.79750 -36.92250 -36.26433 -35.18296 -32.68400 -31.11906 -30.49941 -29.55731 -28.09545 -27.27571 -27.02495 -25.28655 -24.51280 -23.41016 -22.43408 -21.44426 -20.45815 -18.87884 -18.16895 -17.44955 -16.95375 -16.73931 -15.99177 -15.88018 -15.29464 -15.05742 -14.76648 -14.62332 -14.54034 -14.29012 -14.12546 -13.91468 -13.50310 -13.36428 -13.32787 -12.87755 -12.66887 -12.46454 -12.30248 -12.16622 -11.80283 -11.64649 -11.48049 -11.39276 -11.16942 -11.01829 -10.92752 -10.82634 -10.74396 -10.60113 -10.28900 -10.11115 -9.86958 -8.89303 -8.75529 -8.58710 -8.02407 -7.93325 -7.00174 -6.26951 -4.35083 1.70378 1.80950 3.13856 3.18939 3.19843 3.28241 3.35094 3.39240 3.69258 4.24932 4.32031 4.37859 4.38721 4.87157 4.94281 4.95211 5.02318 5.07743 5.29233 5.29818 5.46819 5.49768 5.50940 5.64232 5.65992 5.77635 5.80131 5.83837 5.92692 6.02146 6.06617 6.16128 6.21473 6.32509 6.38011 6.45032 6.60495 6.71072 6.81887 7.02673 7.06733 7.20455 7.26989 7.34593 7.56726 7.67867 7.83254 7.90247 8.08117 8.66659 8.79579 9.32987 10.79039 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009304 B = 0.004885 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.715649 B = 5730.326103 C = 8148.247335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.069 3.931 3 H 0.126 0.874 4 C 0.531 3.469 5 O -0.527 6.527 6 N -0.532 5.532 7 C 0.214 3.786 8 C -0.540 4.540 9 H 0.064 0.936 10 C 0.069 3.931 11 N -0.889 5.889 12 Si 0.897 3.103 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.180 3.820 17 C -0.167 4.167 18 C -0.097 4.097 19 C 0.007 3.993 20 C 0.069 3.931 21 C -0.141 4.141 22 O -0.306 6.306 23 C 0.022 3.978 24 C 0.022 3.978 25 O -0.313 6.313 26 N -0.524 5.524 27 C 0.024 3.976 28 C 0.003 3.997 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.266 0.734 35 H 0.181 0.819 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.114 0.886 42 H 0.027 0.973 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.058 0.942 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 -9.642 -2.440 9.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.042 4.042 3 H 0.143 0.857 4 C 0.322 3.678 5 O -0.407 6.407 6 N -0.252 5.252 7 C 0.096 3.904 8 C -0.578 4.578 9 H 0.083 0.917 10 C -0.135 4.135 11 N -0.527 5.527 12 Si 0.724 3.276 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.207 1.207 16 C 0.084 3.916 17 C -0.186 4.186 18 C -0.116 4.116 19 C -0.038 4.038 20 C 0.023 3.977 21 C -0.162 4.162 22 O -0.221 6.221 23 C -0.054 4.054 24 C -0.054 4.054 25 O -0.228 6.228 26 N -0.247 5.247 27 C -0.125 4.125 28 C -0.144 4.144 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.197 0.803 36 H 0.147 0.853 37 H 0.169 0.831 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.132 0.868 42 H 0.046 0.954 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.120 0.880 46 H 0.077 0.923 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.122 -9.963 -2.395 10.248 hybrid contribution -0.213 1.175 -0.372 1.251 sum -0.091 -8.788 -2.766 9.214 Atomic orbital electron populations 1.22600 0.95512 1.02275 1.04611 1.21607 0.94149 1.00133 0.88354 0.85658 1.20428 0.78508 0.84544 0.84321 1.90223 1.41056 1.24043 1.85390 1.45976 1.56748 1.19444 1.02984 1.20057 0.94578 0.75717 1.00093 1.21438 0.93866 0.90581 1.51936 0.91733 1.24893 0.95667 0.98491 0.94405 1.69917 1.16338 1.17711 1.48688 0.86441 0.82024 0.81296 0.77842 1.19494 1.20741 1.20715 1.17618 0.97074 0.90814 0.86105 1.22292 1.02025 0.93191 1.01118 1.20319 1.02398 0.99999 0.88864 1.18842 1.07318 0.89952 0.87712 1.18487 1.03445 0.90123 0.85608 1.20243 1.06500 1.01322 0.88166 1.86314 1.69405 1.50787 1.15554 1.23544 0.97727 0.93429 0.90716 1.23504 1.01154 0.94934 0.85780 1.86272 1.74102 1.49586 1.12882 1.61955 1.59215 1.02545 1.01027 1.22417 0.98658 0.99306 0.92090 1.22830 0.97104 0.90060 1.04440 0.92295 0.91481 0.89450 0.93536 0.92131 0.92393 0.80265 0.85327 0.83123 0.86620 0.90839 0.91011 0.86794 0.95433 0.91585 0.91205 0.87985 0.92308 0.96123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.00 8.10 37.16 0.30 -2.70 16 2 C 0.07 1.22 1.96 -68.86 -0.13 1.09 16 3 H 0.13 2.45 7.47 -51.93 -0.39 2.06 16 4 C 0.53 10.65 6.67 -10.99 -0.07 10.57 16 5 O -0.53 -10.84 10.18 5.54 0.06 -10.78 16 6 N -0.53 -11.18 2.69 -114.72 -0.31 -11.49 16 7 C 0.21 4.85 3.97 -5.19 -0.02 4.83 16 8 C -0.54 -13.62 9.03 -34.44 -0.31 -13.93 16 9 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 10 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -23.46 13.29 55.43 0.74 -22.72 16 12 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 16 C 0.18 3.73 6.48 -83.66 -0.54 3.19 16 17 C -0.17 -3.17 8.97 -39.40 -0.35 -3.52 16 18 C -0.10 -1.67 9.95 -39.44 -0.39 -2.07 16 19 C 0.01 0.12 6.49 -39.13 -0.25 -0.14 16 20 C 0.07 1.29 6.49 -39.15 -0.25 1.04 16 21 C -0.14 -2.91 9.06 -39.23 -0.36 -3.27 16 22 O -0.31 -5.25 10.42 -32.89 -0.34 -5.59 16 23 C 0.02 0.26 7.26 37.40 0.27 0.53 16 24 C 0.02 0.25 7.26 37.40 0.27 0.52 16 25 O -0.31 -4.83 10.42 -33.20 -0.35 -5.18 16 26 N -0.52 -8.52 4.84 -244.58 -1.18 -9.70 16 27 C 0.02 0.31 9.31 60.07 0.56 0.87 16 28 C 0.00 0.05 8.77 60.06 0.53 0.58 16 29 H 0.06 0.86 6.07 -51.93 -0.32 0.55 16 30 H 0.07 0.95 6.83 -51.93 -0.35 0.60 16 31 H 0.09 1.49 5.29 -51.93 -0.27 1.22 16 32 H 0.05 1.12 6.39 -51.93 -0.33 0.79 16 33 H 0.06 1.35 4.18 -51.93 -0.22 1.13 16 34 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.18 3.47 4.73 -55.11 -0.26 3.21 16 36 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.15 3.34 6.31 -52.49 -0.33 3.01 16 38 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.03 0.34 6.57 -51.93 -0.34 0.00 16 43 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.10 1.71 5.23 -51.93 -0.27 1.44 16 46 H 0.06 0.77 8.12 -51.93 -0.42 0.34 16 47 H 0.02 0.28 6.15 -51.93 -0.32 -0.04 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -28.88 364.28 -8.11 -36.99 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.33 Total: 8.44 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.86 Total: -0.74 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.76 Total: -43.92 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.63 Total: -21.55 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.88 -8.11 -36.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602092736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.536 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds