Wall clock time and date at job start Tue Mar 31 2020 18:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47282 * 2 1 4 4 C 1.50701 * 109.46872 * 240.00357 * 2 1 3 5 5 O 1.21303 * 119.99681 * 245.98823 * 4 2 1 6 6 N 1.34772 * 120.00481 * 65.98583 * 4 2 1 7 7 C 1.46509 * 119.99792 * 6.25243 * 6 4 2 8 8 C 1.50702 * 109.46893 * 86.77669 * 7 6 4 9 9 H 1.08000 * 119.99942 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99826 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00241 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99807 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47351 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47510 * 119.99903 * 12 10 8 15 15 H 1.48507 * 109.47001 * 240.00103 * 12 10 8 16 16 C 1.40102 * 120.00255 * 186.25379 * 6 4 2 17 17 C 1.38838 * 120.01516 * 7.77022 * 16 6 4 18 18 C 1.38138 * 120.03348 * 179.77239 * 17 16 6 19 19 C 1.38709 * 120.15852 * 0.56858 * 18 17 16 20 20 C 1.38984 * 119.93781 * 359.61864 * 19 18 17 21 21 C 1.38650 * 119.88443 * 0.12475 * 20 19 18 22 22 O 1.36115 * 120.78563 * 180.26614 * 20 19 18 23 23 C 1.43165 * 116.73315 * 342.80464 * 22 20 19 24 24 C 1.53466 * 108.24243 * 46.18881 * 23 22 20 25 25 O 1.36212 * 119.31502 * 179.53857 * 19 18 17 26 26 N 1.46895 * 109.47359 * 120.00208 * 2 1 3 27 27 C 1.46904 * 110.99680 * 295.00077 * 26 2 1 28 28 C 1.46900 * 110.99830 * 58.94861 * 26 2 1 29 29 H 1.08999 * 109.46746 * 186.05447 * 1 2 3 30 30 H 1.08996 * 109.46587 * 306.05352 * 1 2 3 31 31 H 1.08999 * 109.46990 * 66.04879 * 1 2 3 32 32 H 1.09000 * 109.47032 * 206.77727 * 7 6 4 33 33 H 1.08995 * 109.47123 * 326.77854 * 7 6 4 34 34 H 0.97001 * 119.99798 * 179.97438 * 11 10 8 35 35 H 1.07996 * 119.98622 * 0.04724 * 17 16 6 36 36 H 1.07997 * 119.91593 * 180.25668 * 18 17 16 37 37 H 1.07998 * 119.99264 * 179.97438 * 21 20 19 38 38 H 1.08994 * 109.70839 * 165.87516 * 23 22 20 39 39 H 1.08994 * 109.70740 * 286.50580 * 23 22 20 40 40 H 1.09004 * 109.71506 * 59.92392 * 24 23 22 41 41 H 1.09002 * 109.71284 * 180.55191 * 24 23 22 42 42 H 1.08995 * 109.47459 * 60.00099 * 27 26 2 43 43 H 1.09000 * 109.46959 * 179.97438 * 27 26 2 44 44 H 1.08998 * 109.47015 * 299.99078 * 27 26 2 45 45 H 1.09002 * 109.46990 * 60.00410 * 28 26 2 46 46 H 1.08999 * 109.46948 * 179.97438 * 28 26 2 47 47 H 1.08998 * 109.47764 * 300.00284 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.6375 -1.7561 -1.1226 6 7 1.8092 -0.1839 -2.4509 7 6 1.2008 1.1430 -2.5762 8 6 2.2771 2.1964 -2.5195 9 1 3.3108 1.9064 -2.4024 10 6 1.9421 3.5302 -2.6182 11 7 0.6835 3.8832 -2.7624 12 14 3.2762 4.8358 -2.5487 13 1 4.5998 4.1828 -2.3838 14 1 3.2653 5.6223 -3.8082 15 1 3.0242 5.7402 -1.3981 16 6 2.1588 -0.9054 -3.5998 17 6 2.5840 -2.2226 -3.4901 18 6 2.9244 -2.9359 -4.6231 19 6 2.8540 -2.3358 -5.8717 20 6 2.4325 -1.0162 -5.9843 21 6 2.0859 -0.3023 -4.8474 22 8 2.3518 -0.4121 -7.2013 23 6 3.0595 -1.0360 -8.2782 24 6 2.7630 -2.5413 -8.2396 25 8 3.2027 -3.0522 -6.9765 26 7 2.0198 -0.6925 1.1993 27 6 1.6488 0.0392 2.4180 28 6 1.5283 -2.0761 1.2459 29 1 -0.3633 -1.0219 0.1084 30 1 -0.3632 0.6048 0.8308 31 1 -0.3633 0.4172 -0.9392 32 1 0.6739 1.2128 -3.5278 33 1 0.4968 1.2986 -1.7587 34 1 0.4478 4.8216 -2.8315 35 1 2.6444 -2.6912 -2.5190 36 1 3.2508 -3.9616 -4.5359 37 1 1.7585 0.7233 -4.9328 38 1 2.7246 -0.6197 -9.2282 39 1 4.1301 -0.8691 -8.1600 40 1 1.6916 -2.7080 -8.3508 41 1 3.2991 -3.0424 -9.0455 42 1 0.5634 0.1176 2.4785 43 1 2.0232 -0.4955 3.2909 44 1 2.0843 1.0379 2.3889 45 1 1.8762 -2.6150 0.3646 46 1 1.9061 -2.5658 2.1434 47 1 0.4385 -2.0742 1.2639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602092736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:32 Heat of formation + Delta-G solvation = -54.731425 kcal Electronic energy + Delta-G solvation = -30279.896526 eV Core-core repulsion = 26236.495370 eV Total energy + Delta-G solvation = -4043.401156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.35838 -41.65752 -39.15120 -38.17212 -37.65547 -36.80113 -34.59491 -32.39437 -31.82155 -30.87235 -29.72417 -28.58925 -28.39153 -26.63123 -25.72063 -25.19352 -23.79876 -22.86364 -21.75626 -20.27985 -19.49051 -18.85015 -18.79961 -18.11491 -17.50170 -17.26660 -16.54904 -16.52319 -16.38038 -16.06228 -15.83246 -15.54404 -15.37196 -15.28705 -14.93119 -14.69993 -14.59232 -14.41250 -14.19823 -13.88163 -13.69221 -13.59673 -13.15429 -12.97904 -12.88620 -12.85538 -12.65983 -12.54508 -12.36730 -12.13460 -12.10105 -12.05085 -11.94882 -11.64974 -11.40127 -10.64088 -10.48128 -10.18419 -9.48337 -9.17578 -8.54814 -8.21016 -6.38532 0.22333 0.33923 1.37039 1.40845 1.50360 1.62288 1.83199 2.16656 2.36768 2.44088 2.81735 3.05152 3.09907 3.35640 3.46906 3.72355 3.98902 4.01275 4.10431 4.15159 4.20263 4.37115 4.40224 4.41985 4.49183 4.51483 4.60744 4.61165 4.67431 4.71537 4.72475 4.85002 4.89855 5.01218 5.06139 5.09822 5.15490 5.23487 5.28413 5.33788 5.51501 5.65014 5.92380 5.95722 5.97081 6.08075 6.19036 6.43548 6.48011 6.72695 7.15907 7.32548 8.80626 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009304 B = 0.004885 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.715649 B = 5730.326103 C = 8148.247335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.075 3.925 3 H 0.103 0.897 4 C 0.524 3.476 5 O -0.535 6.535 6 N -0.537 5.537 7 C 0.230 3.770 8 C -0.545 4.545 9 H 0.045 0.955 10 C 0.032 3.968 11 N -0.912 5.912 12 Si 0.950 3.050 13 H -0.277 1.277 14 H -0.279 1.279 15 H -0.270 1.270 16 C 0.157 3.843 17 C -0.171 4.171 18 C -0.091 4.091 19 C 0.014 3.986 20 C 0.067 3.933 21 C -0.163 4.163 22 O -0.328 6.328 23 C 0.011 3.989 24 C 0.017 3.983 25 O -0.318 6.318 26 N -0.542 5.542 27 C 0.023 3.977 28 C 0.007 3.993 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.270 0.730 35 H 0.178 0.822 36 H 0.157 0.843 37 H 0.124 0.876 38 H 0.154 0.846 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.159 0.841 42 H 0.039 0.961 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 -10.781 -2.846 11.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.037 4.037 3 H 0.121 0.879 4 C 0.315 3.685 5 O -0.415 6.415 6 N -0.257 5.257 7 C 0.111 3.889 8 C -0.584 4.584 9 H 0.063 0.937 10 C -0.170 4.170 11 N -0.551 5.551 12 Si 0.776 3.224 13 H -0.202 1.202 14 H -0.205 1.205 15 H -0.195 1.195 16 C 0.061 3.939 17 C -0.190 4.190 18 C -0.110 4.110 19 C -0.032 4.032 20 C 0.021 3.979 21 C -0.184 4.184 22 O -0.243 6.243 23 C -0.063 4.063 24 C -0.057 4.057 25 O -0.234 6.234 26 N -0.266 5.266 27 C -0.124 4.124 28 C -0.140 4.140 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.194 0.806 36 H 0.175 0.825 37 H 0.142 0.858 38 H 0.172 0.828 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.176 0.824 42 H 0.058 0.942 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.538 -11.116 -2.811 11.478 hybrid contribution -0.296 1.441 -0.408 1.527 sum 0.242 -9.675 -3.219 10.199 Atomic orbital electron populations 1.22500 0.93975 1.03237 1.04277 1.21461 0.95242 0.98685 0.88278 0.87877 1.20910 0.78335 0.84662 0.84584 1.90217 1.41339 1.24373 1.85551 1.45938 1.57126 1.18915 1.03763 1.19722 0.93882 0.76249 0.99059 1.21505 0.93426 0.91611 1.51831 0.93697 1.25491 0.97344 1.00004 0.94146 1.69981 1.17520 1.18234 1.49347 0.85617 0.79451 0.79201 0.78132 1.20186 1.20454 1.19531 1.17872 0.98329 0.91695 0.86003 1.22268 1.02459 0.92552 1.01768 1.20599 1.01117 1.00988 0.88265 1.18872 1.06058 0.89435 0.88826 1.18505 1.02856 0.90623 0.85873 1.20111 1.08389 1.00512 0.89379 1.86283 1.70169 1.51959 1.15855 1.24009 0.97707 0.94182 0.90445 1.23921 1.02395 0.94596 0.84824 1.86265 1.74019 1.49488 1.13580 1.61949 1.59945 1.03371 1.01290 1.22491 0.99528 0.99093 0.91318 1.22768 0.97835 0.89101 1.04317 0.91054 0.89678 0.91294 0.95586 0.91609 0.92076 0.80562 0.82520 0.85813 0.82847 0.90573 0.90332 0.82355 0.94223 0.89521 0.91623 0.90203 0.90298 0.94916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.66 8.10 71.98 0.58 -5.08 16 2 C 0.07 2.70 1.96 44.17 0.09 2.79 16 3 H 0.10 4.18 7.47 -2.39 -0.02 4.16 16 4 C 0.52 21.66 6.67 87.66 0.59 22.25 16 5 O -0.53 -22.46 10.18 -3.10 -0.03 -22.50 16 6 N -0.54 -23.76 2.69 -635.24 -1.71 -25.47 16 7 C 0.23 11.03 3.97 85.63 0.34 11.37 16 8 C -0.55 -28.71 9.03 25.60 0.23 -28.48 16 9 H 0.04 2.50 7.81 -2.91 -0.02 2.48 16 10 C 0.03 1.65 5.46 84.65 0.46 2.11 16 11 N -0.91 -49.13 13.29 21.45 0.28 -48.85 16 12 Si 0.95 42.27 29.54 68.60 2.03 44.30 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 14 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 16 C 0.16 6.79 6.48 38.09 0.25 7.03 16 17 C -0.17 -6.61 8.97 22.39 0.20 -6.41 16 18 C -0.09 -3.07 9.95 22.36 0.22 -2.85 16 19 C 0.01 0.47 6.49 22.56 0.15 0.61 16 20 C 0.07 2.56 6.49 22.55 0.15 2.71 16 21 C -0.16 -7.07 9.06 22.49 0.20 -6.87 16 22 O -0.33 -11.17 10.42 -82.64 -0.86 -12.04 16 23 C 0.01 0.24 7.26 72.14 0.52 0.76 16 24 C 0.02 0.33 7.26 72.14 0.52 0.86 16 25 O -0.32 -9.03 10.42 -83.74 -0.87 -9.90 16 26 N -0.54 -17.20 4.84 -927.72 -4.49 -21.69 16 27 C 0.02 0.57 9.31 127.69 1.19 1.76 16 28 C 0.01 0.20 8.77 127.69 1.12 1.32 16 29 H 0.07 2.03 6.07 -2.39 -0.01 2.01 16 30 H 0.08 2.32 6.83 -2.39 -0.02 2.30 16 31 H 0.07 2.42 5.29 -2.39 -0.01 2.40 16 32 H 0.03 1.35 6.39 -2.39 -0.02 1.33 16 33 H 0.07 3.08 4.18 -2.39 -0.01 3.07 16 34 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 35 H 0.18 6.95 4.73 -44.40 -0.21 6.74 16 36 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.12 5.96 6.31 -2.91 -0.02 5.94 16 38 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 1.45 8.14 -2.38 -0.02 1.44 16 41 H 0.16 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.04 0.88 6.57 -2.39 -0.02 0.87 16 43 H 0.09 1.78 8.12 -2.39 -0.02 1.76 16 44 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.08 2.64 5.23 -2.39 -0.01 2.63 16 46 H 0.08 1.89 8.12 -2.39 -0.02 1.87 16 47 H 0.03 0.83 6.15 -2.39 -0.01 0.82 16 Total: -1.00 -64.25 364.28 1.97 -62.28 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.81 Total: 29.97 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 6.81 Total: 3.89 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -5.91 Total: -96.01 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -1.76 Total: -44.43 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -64.25 1.97 -62.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602092736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.553 kcal (2) G-P(sol) polarization free energy of solvation -64.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds