Wall clock time and date at job start Tue Mar 31 2020 18:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47033 * 2 1 4 4 C 1.50697 * 109.47301 * 120.00248 * 2 1 3 5 5 O 1.21295 * 120.00396 * 94.11009 * 4 2 1 6 6 N 1.34783 * 120.00014 * 274.11057 * 4 2 1 7 7 C 1.46496 * 119.99754 * 6.22851 * 6 4 2 8 8 C 1.50700 * 109.47416 * 90.00102 * 7 6 4 9 9 H 1.07995 * 119.99798 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00069 * 180.02562 * 8 7 6 11 11 N 1.31518 * 120.00224 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99774 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47398 * 89.99637 * 12 10 8 14 14 H 1.48506 * 109.46985 * 209.99333 * 12 10 8 15 15 H 1.48500 * 109.47220 * 329.99279 * 12 10 8 16 16 C 1.40098 * 120.00253 * 186.22624 * 6 4 2 17 17 C 1.38851 * 120.01649 * 7.78223 * 16 6 4 18 18 C 1.38126 * 120.03599 * 179.77495 * 17 16 6 19 19 C 1.38711 * 120.16274 * 0.53735 * 18 17 16 20 20 C 1.39000 * 119.93098 * 359.65536 * 19 18 17 21 21 C 1.38645 * 119.88456 * 0.11332 * 20 19 18 22 22 O 1.36113 * 120.78043 * 180.26214 * 20 19 18 23 23 C 1.43171 * 116.73347 * 342.79773 * 22 20 19 24 24 C 1.53469 * 108.24470 * 46.19158 * 23 22 20 25 25 O 1.36198 * 119.32286 * 179.55697 * 19 18 17 26 26 N 1.46901 * 109.47314 * 240.00314 * 2 1 3 27 27 C 1.46906 * 111.00156 * 59.99506 * 26 2 1 28 28 C 1.46897 * 111.00497 * 183.95455 * 26 2 1 29 29 H 1.09000 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47257 * 300.00065 * 1 2 3 31 31 H 1.09002 * 109.47195 * 59.99989 * 1 2 3 32 32 H 1.09001 * 109.46878 * 210.00199 * 7 6 4 33 33 H 1.09002 * 109.47407 * 329.99625 * 7 6 4 34 34 H 0.96991 * 120.00026 * 180.02562 * 11 10 8 35 35 H 1.07998 * 119.97926 * 0.05313 * 17 16 6 36 36 H 1.08001 * 119.91811 * 180.29528 * 18 17 16 37 37 H 1.07997 * 119.98993 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.70855 * 165.88500 * 23 22 20 39 39 H 1.09004 * 109.70775 * 286.50230 * 23 22 20 40 40 H 1.08997 * 109.71124 * 59.92142 * 24 23 22 41 41 H 1.08999 * 109.71144 * 180.55052 * 24 23 22 42 42 H 1.08997 * 109.46491 * 60.00405 * 27 26 2 43 43 H 1.08996 * 109.47172 * 180.02562 * 27 26 2 44 44 H 1.09001 * 109.46941 * 300.00697 * 27 26 2 45 45 H 1.09004 * 109.46683 * 59.99247 * 28 26 2 46 46 H 1.08991 * 109.47449 * 179.97438 * 28 26 2 47 47 H 1.09007 * 109.46997 * 300.00001 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3055 -1.8911 1.1800 6 7 2.1781 -0.0338 2.3869 7 6 1.7211 1.3545 2.4859 8 6 0.2860 1.3795 2.9449 9 1 -0.2339 0.4538 3.1427 10 6 -0.3637 2.5842 3.1113 11 7 0.2692 3.7115 2.8700 12 14 -2.1424 2.6152 3.6810 13 1 -2.1863 2.6698 5.1643 14 1 -2.8206 3.8119 3.1213 15 1 -2.8344 1.3886 3.2100 16 6 2.7666 -0.6583 3.4945 17 6 3.3450 -1.9132 3.3583 18 6 3.9294 -2.5272 4.4489 19 6 3.9307 -1.8980 5.6851 20 6 3.3490 -0.6434 5.8254 21 6 2.7667 -0.0254 4.7293 22 8 3.3452 -0.0080 7.0291 23 6 3.6059 -0.8138 8.1835 24 6 4.8185 -1.7053 7.8833 25 8 4.5038 -2.5229 6.7509 26 7 2.0197 -0.6924 -1.1995 27 6 1.5486 -0.0263 -2.4211 28 6 3.4850 -0.7945 -1.1871 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.3416 1.8909 3.2038 33 1 1.7988 1.8331 1.5097 34 1 -0.1877 4.5590 2.9874 35 1 3.3418 -2.4075 2.3981 36 1 4.3829 -3.5012 4.3397 37 1 2.3139 0.9491 4.8365 38 1 3.8234 -0.1727 9.0377 39 1 2.7375 -1.4355 8.4015 40 1 5.6851 -1.0837 7.6584 41 1 5.0324 -2.3374 8.7451 42 1 1.9121 1.0011 -2.4379 43 1 1.9252 -0.5596 -3.2940 44 1 0.4587 -0.0265 -2.4378 45 1 3.8029 -1.3531 -0.3067 46 1 3.8208 -1.3116 -2.0859 47 1 3.9187 0.2052 -1.1592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610560904.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:36 Heat of formation + Delta-G solvation = -46.307778 kcal Electronic energy + Delta-G solvation = -30307.379572 eV Core-core repulsion = 26264.343693 eV Total energy + Delta-G solvation = -4043.035879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.98008 -40.16064 -37.67147 -36.92154 -36.21237 -35.12327 -32.71366 -31.19656 -30.55451 -29.68840 -28.19192 -27.56591 -26.92733 -24.67806 -24.27746 -23.43048 -22.52871 -21.57684 -20.49257 -18.84490 -18.13308 -17.58852 -16.89149 -16.67791 -16.13512 -15.89863 -15.21512 -14.94795 -14.89316 -14.66098 -14.56862 -14.30604 -14.12132 -13.84564 -13.50004 -13.35997 -13.17506 -12.71454 -12.54991 -12.36388 -12.22172 -12.09646 -11.92303 -11.54639 -11.47514 -11.37660 -11.07038 -11.03338 -10.93103 -10.89007 -10.76123 -10.75940 -10.30463 -10.11350 -9.93123 -8.93621 -8.77102 -8.65290 -8.02279 -8.00679 -7.00856 -6.29287 -4.37116 1.70281 1.81174 3.12573 3.18357 3.20543 3.26064 3.31318 3.38411 3.67757 4.21176 4.29808 4.34432 4.38359 4.87195 4.94975 4.96748 5.02194 5.04263 5.29833 5.34696 5.49772 5.53093 5.53581 5.60817 5.66276 5.77910 5.82529 5.85787 5.97996 6.01925 6.15609 6.21977 6.27850 6.32007 6.39073 6.58360 6.68610 6.79601 6.89893 7.00727 7.05712 7.17893 7.24307 7.27905 7.55854 7.64610 7.83341 7.86736 8.06583 8.64908 8.78087 9.29527 10.76589 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009272 B = 0.004986 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.984216 B = 5614.850832 C = 8093.612461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.075 3.925 3 H 0.070 0.930 4 C 0.527 3.473 5 O -0.525 6.525 6 N -0.534 5.534 7 C 0.225 3.775 8 C -0.538 4.538 9 H 0.066 0.934 10 C 0.070 3.930 11 N -0.886 5.886 12 Si 0.895 3.105 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.270 1.270 16 C 0.180 3.820 17 C -0.167 4.167 18 C -0.097 4.097 19 C 0.007 3.993 20 C 0.068 3.932 21 C -0.139 4.139 22 O -0.306 6.306 23 C 0.022 3.978 24 C 0.022 3.978 25 O -0.313 6.313 26 N -0.529 5.529 27 C 0.025 3.975 28 C 0.018 3.982 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.267 0.733 35 H 0.181 0.819 36 H 0.129 0.871 37 H 0.152 0.848 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.114 0.886 42 H 0.025 0.975 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.823 -6.072 1.360 9.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.036 4.036 3 H 0.087 0.913 4 C 0.317 3.683 5 O -0.403 6.403 6 N -0.254 5.254 7 C 0.107 3.893 8 C -0.576 4.576 9 H 0.084 0.916 10 C -0.134 4.134 11 N -0.524 5.524 12 Si 0.722 3.278 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.195 1.195 16 C 0.083 3.917 17 C -0.186 4.186 18 C -0.116 4.116 19 C -0.038 4.038 20 C 0.023 3.977 21 C -0.161 4.161 22 O -0.220 6.220 23 C -0.054 4.054 24 C -0.054 4.054 25 O -0.228 6.228 26 N -0.253 5.253 27 C -0.124 4.124 28 C -0.130 4.130 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.197 0.803 36 H 0.147 0.853 37 H 0.170 0.830 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.132 0.868 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 6.717 -6.882 1.306 9.705 hybrid contribution -0.629 1.224 0.761 1.572 sum 6.088 -5.658 2.067 8.564 Atomic orbital electron populations 1.22014 0.91179 1.02913 1.04785 1.21581 0.98341 0.95826 0.87855 0.91269 1.20468 0.76892 0.86664 0.84310 1.90317 1.49939 1.15582 1.84478 1.46042 1.54536 1.16154 1.08689 1.19778 0.95889 0.74330 0.99346 1.21332 0.96169 0.93144 1.46933 0.91601 1.24899 0.98569 0.95199 0.94717 1.69909 1.37275 0.97668 1.47540 0.86519 0.84127 0.77876 0.79235 1.20355 1.20963 1.19503 1.17608 0.94636 0.92558 0.86863 1.22296 0.99729 0.95095 1.01529 1.20314 1.01810 1.00557 0.88926 1.18846 1.02243 0.93945 0.88750 1.18496 1.00502 0.92559 0.86161 1.20250 1.03295 1.03348 0.89166 1.86316 1.87740 1.35480 1.12510 1.23547 0.98181 0.95543 0.88148 1.23503 0.97317 0.95291 0.89257 1.86268 1.77345 1.35565 1.23659 1.61783 1.10495 1.51854 1.01216 1.22427 1.01605 0.96468 0.91855 1.22499 0.87227 0.99819 1.03499 0.92226 0.87721 0.92249 0.93615 0.93447 0.92289 0.80276 0.85322 0.83032 0.86626 0.90845 0.91012 0.86791 0.95665 0.91510 0.90820 0.90258 0.91553 0.96132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.89 37.16 0.33 -2.37 16 2 C 0.07 1.36 1.74 -68.87 -0.12 1.24 16 3 H 0.07 1.29 6.20 -51.93 -0.32 0.97 16 4 C 0.53 10.68 5.80 -10.98 -0.06 10.62 16 5 O -0.52 -11.09 11.62 5.54 0.06 -11.03 16 6 N -0.53 -11.30 2.69 -114.72 -0.31 -11.61 16 7 C 0.23 5.13 4.25 -5.20 -0.02 5.11 16 8 C -0.54 -13.19 6.89 -34.44 -0.24 -13.42 16 9 H 0.07 1.68 7.79 -52.49 -0.41 1.27 16 10 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -23.20 13.29 55.43 0.74 -22.46 16 12 Si 0.90 19.91 29.54 -169.99 -5.02 14.88 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 C 0.18 3.73 6.48 -83.66 -0.54 3.19 16 17 C -0.17 -3.20 8.97 -39.40 -0.35 -3.56 16 18 C -0.10 -1.69 9.95 -39.45 -0.39 -2.08 16 19 C 0.01 0.12 6.49 -39.12 -0.25 -0.13 16 20 C 0.07 1.28 6.49 -39.15 -0.25 1.03 16 21 C -0.14 -2.88 9.06 -39.24 -0.36 -3.23 16 22 O -0.31 -5.26 10.42 -32.89 -0.34 -5.61 16 23 C 0.02 0.26 7.26 37.40 0.27 0.53 16 24 C 0.02 0.25 7.26 37.40 0.27 0.52 16 25 O -0.31 -4.85 10.42 -33.16 -0.35 -5.19 16 26 N -0.53 -8.56 4.63 -244.59 -1.13 -9.69 16 27 C 0.02 0.32 9.21 60.07 0.55 0.87 16 28 C 0.02 0.26 9.15 60.06 0.55 0.81 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.10 2.13 5.41 -51.93 -0.28 1.85 16 31 H 0.06 0.92 6.40 -51.93 -0.33 0.58 16 32 H 0.05 1.10 6.57 -51.93 -0.34 0.76 16 33 H 0.05 1.09 5.80 -51.93 -0.30 0.79 16 34 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.18 3.54 4.73 -55.11 -0.26 3.28 16 36 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 37 H 0.15 3.37 6.26 -52.49 -0.33 3.04 16 38 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.75 8.12 -51.93 -0.42 0.32 16 44 H 0.07 0.92 6.30 -51.93 -0.33 0.60 16 45 H 0.08 1.32 6.00 -51.93 -0.31 1.01 16 46 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 47 H 0.02 0.29 8.14 -51.92 -0.42 -0.13 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -28.56 368.33 -8.09 -36.65 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.57 Total: 7.71 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.72 Total: 0.79 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.70 Total: -43.76 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.62 Total: -21.83 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.56 -8.09 -36.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610560904.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.655 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds