Wall clock time and date at job start Tue Mar 31 2020 18:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47033 * 2 1 4 4 C 1.50697 * 109.47301 * 120.00248 * 2 1 3 5 5 O 1.21295 * 120.00396 * 94.11009 * 4 2 1 6 6 N 1.34783 * 120.00014 * 274.11057 * 4 2 1 7 7 C 1.46496 * 119.99754 * 6.22851 * 6 4 2 8 8 C 1.50700 * 109.47416 * 90.00102 * 7 6 4 9 9 H 1.07995 * 119.99798 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00069 * 180.02562 * 8 7 6 11 11 N 1.31518 * 120.00224 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99774 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47398 * 89.99637 * 12 10 8 14 14 H 1.48506 * 109.46985 * 209.99333 * 12 10 8 15 15 H 1.48500 * 109.47220 * 329.99279 * 12 10 8 16 16 C 1.40098 * 120.00253 * 186.22624 * 6 4 2 17 17 C 1.38851 * 120.01649 * 7.78223 * 16 6 4 18 18 C 1.38126 * 120.03599 * 179.77495 * 17 16 6 19 19 C 1.38711 * 120.16274 * 0.53735 * 18 17 16 20 20 C 1.39000 * 119.93098 * 359.65536 * 19 18 17 21 21 C 1.38645 * 119.88456 * 0.11332 * 20 19 18 22 22 O 1.36113 * 120.78043 * 180.26214 * 20 19 18 23 23 C 1.43171 * 116.73347 * 342.79773 * 22 20 19 24 24 C 1.53469 * 108.24470 * 46.19158 * 23 22 20 25 25 O 1.36198 * 119.32286 * 179.55697 * 19 18 17 26 26 N 1.46901 * 109.47314 * 240.00314 * 2 1 3 27 27 C 1.46906 * 111.00156 * 59.99506 * 26 2 1 28 28 C 1.46897 * 111.00497 * 183.95455 * 26 2 1 29 29 H 1.09000 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47257 * 300.00065 * 1 2 3 31 31 H 1.09002 * 109.47195 * 59.99989 * 1 2 3 32 32 H 1.09001 * 109.46878 * 210.00199 * 7 6 4 33 33 H 1.09002 * 109.47407 * 329.99625 * 7 6 4 34 34 H 0.96991 * 120.00026 * 180.02562 * 11 10 8 35 35 H 1.07998 * 119.97926 * 0.05313 * 17 16 6 36 36 H 1.08001 * 119.91811 * 180.29528 * 18 17 16 37 37 H 1.07997 * 119.98993 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.70855 * 165.88500 * 23 22 20 39 39 H 1.09004 * 109.70775 * 286.50230 * 23 22 20 40 40 H 1.08997 * 109.71124 * 59.92142 * 24 23 22 41 41 H 1.08999 * 109.71144 * 180.55052 * 24 23 22 42 42 H 1.08997 * 109.46491 * 60.00405 * 27 26 2 43 43 H 1.08996 * 109.47172 * 180.02562 * 27 26 2 44 44 H 1.09001 * 109.46941 * 300.00697 * 27 26 2 45 45 H 1.09004 * 109.46683 * 59.99247 * 28 26 2 46 46 H 1.08991 * 109.47449 * 179.97438 * 28 26 2 47 47 H 1.09007 * 109.46997 * 300.00001 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3055 -1.8911 1.1800 6 7 2.1781 -0.0338 2.3869 7 6 1.7211 1.3545 2.4859 8 6 0.2860 1.3795 2.9449 9 1 -0.2339 0.4538 3.1427 10 6 -0.3637 2.5842 3.1113 11 7 0.2692 3.7115 2.8700 12 14 -2.1424 2.6152 3.6810 13 1 -2.1863 2.6698 5.1643 14 1 -2.8206 3.8119 3.1213 15 1 -2.8344 1.3886 3.2100 16 6 2.7666 -0.6583 3.4945 17 6 3.3450 -1.9132 3.3583 18 6 3.9294 -2.5272 4.4489 19 6 3.9307 -1.8980 5.6851 20 6 3.3490 -0.6434 5.8254 21 6 2.7667 -0.0254 4.7293 22 8 3.3452 -0.0080 7.0291 23 6 3.6059 -0.8138 8.1835 24 6 4.8185 -1.7053 7.8833 25 8 4.5038 -2.5229 6.7509 26 7 2.0197 -0.6924 -1.1995 27 6 1.5486 -0.0263 -2.4211 28 6 3.4850 -0.7945 -1.1871 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.3416 1.8909 3.2038 33 1 1.7988 1.8331 1.5097 34 1 -0.1877 4.5590 2.9874 35 1 3.3418 -2.4075 2.3981 36 1 4.3829 -3.5012 4.3397 37 1 2.3139 0.9491 4.8365 38 1 3.8234 -0.1727 9.0377 39 1 2.7375 -1.4355 8.4015 40 1 5.6851 -1.0837 7.6584 41 1 5.0324 -2.3374 8.7451 42 1 1.9121 1.0011 -2.4379 43 1 1.9252 -0.5596 -3.2940 44 1 0.4587 -0.0265 -2.4378 45 1 3.8029 -1.3531 -0.3067 46 1 3.8208 -1.3116 -2.0859 47 1 3.9187 0.2052 -1.1592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610560904.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:35 Heat of formation + Delta-G solvation = -64.136331 kcal Electronic energy + Delta-G solvation = -30308.152676 eV Core-core repulsion = 26264.343693 eV Total energy + Delta-G solvation = -4043.808983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.35364 -41.62135 -39.04668 -38.17686 -37.61045 -36.76663 -34.59041 -32.54347 -31.85875 -31.06074 -29.75567 -28.93995 -28.32804 -25.97169 -25.59241 -25.21588 -23.88454 -23.01572 -21.79533 -20.28826 -19.48610 -19.02064 -18.59783 -18.20453 -17.66746 -17.21526 -16.54697 -16.47669 -16.31721 -16.16581 -15.83642 -15.63924 -15.36734 -15.25723 -14.93181 -14.68649 -14.52122 -14.29856 -14.18607 -13.76046 -13.56345 -13.45027 -13.18563 -13.04539 -12.90806 -12.87527 -12.71279 -12.56651 -12.45028 -12.26036 -12.11654 -12.02697 -11.95184 -11.72677 -11.40630 -10.65954 -10.51939 -10.28116 -9.48881 -9.29747 -8.55945 -8.20859 -6.36650 0.21092 0.33126 1.39483 1.42442 1.50371 1.59833 1.80592 2.15274 2.36820 2.43297 2.80390 2.99043 3.07668 3.35124 3.45289 3.72017 3.98677 4.03276 4.10260 4.16221 4.21789 4.28916 4.38397 4.42363 4.46701 4.51803 4.60866 4.67625 4.70155 4.71619 4.78458 4.82694 4.92107 4.99887 5.05052 5.07117 5.09972 5.16064 5.30463 5.43400 5.47441 5.65145 5.87415 5.94479 5.94925 6.02763 6.10396 6.39963 6.47477 6.72257 7.13592 7.32655 8.81727 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009272 B = 0.004986 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.984216 B = 5614.850832 C = 8093.612461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.080 3.920 3 H 0.060 0.940 4 C 0.522 3.478 5 O -0.535 6.535 6 N -0.540 5.540 7 C 0.243 3.757 8 C -0.534 4.534 9 H 0.051 0.949 10 C 0.032 3.968 11 N -0.914 5.914 12 Si 0.948 3.052 13 H -0.280 1.280 14 H -0.276 1.276 15 H -0.268 1.268 16 C 0.156 3.844 17 C -0.171 4.171 18 C -0.091 4.091 19 C 0.015 3.985 20 C 0.067 3.933 21 C -0.159 4.159 22 O -0.327 6.327 23 C 0.011 3.989 24 C 0.017 3.983 25 O -0.318 6.318 26 N -0.539 5.539 27 C 0.023 3.977 28 C 0.020 3.980 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.025 0.975 33 H 0.043 0.957 34 H 0.270 0.730 35 H 0.176 0.824 36 H 0.157 0.843 37 H 0.125 0.875 38 H 0.154 0.846 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.159 0.841 42 H 0.028 0.972 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.057 0.943 46 H 0.092 0.908 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.229 -7.286 1.873 10.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 H 0.078 0.922 4 C 0.313 3.687 5 O -0.415 6.415 6 N -0.260 5.260 7 C 0.124 3.876 8 C -0.572 4.572 9 H 0.070 0.930 10 C -0.169 4.169 11 N -0.552 5.552 12 Si 0.774 3.226 13 H -0.206 1.206 14 H -0.201 1.201 15 H -0.192 1.192 16 C 0.061 3.939 17 C -0.191 4.191 18 C -0.110 4.110 19 C -0.031 4.031 20 C 0.021 3.979 21 C -0.181 4.181 22 O -0.242 6.242 23 C -0.063 4.063 24 C -0.057 4.057 25 O -0.233 6.233 26 N -0.264 5.264 27 C -0.124 4.124 28 C -0.128 4.128 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.192 0.808 36 H 0.175 0.825 37 H 0.143 0.857 38 H 0.171 0.829 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.177 0.823 42 H 0.047 0.953 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.111 0.889 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 7.133 -8.109 1.831 10.954 hybrid contribution -0.649 1.535 0.751 1.828 sum 6.485 -6.574 2.581 9.588 Atomic orbital electron populations 1.21905 0.90985 1.02635 1.04602 1.21489 0.98391 0.95172 0.88038 0.92240 1.20889 0.76527 0.86711 0.84580 1.90300 1.50469 1.15974 1.84713 1.46002 1.54967 1.15564 1.09460 1.19400 0.94726 0.75289 0.98224 1.21348 0.96801 0.92563 1.46520 0.93040 1.25494 1.01698 0.94882 0.94838 1.69985 1.38574 0.98068 1.48594 0.85693 0.80405 0.78060 0.78464 1.20633 1.20133 1.19229 1.17846 0.95781 0.93476 0.86835 1.22245 1.00202 0.94521 1.02094 1.20582 1.00742 1.01327 0.88345 1.18868 1.01401 0.93141 0.89656 1.18509 0.99996 0.92894 0.86476 1.20109 1.04923 1.02733 0.90310 1.86286 1.87730 1.37120 1.13103 1.24014 0.98784 0.96323 0.87221 1.23923 0.96885 0.95902 0.89029 1.86262 1.76755 1.36346 1.23970 1.61815 1.11246 1.52040 1.01326 1.22541 1.02011 0.96801 0.91082 1.22494 0.86610 0.99994 1.03736 0.92446 0.90464 0.89755 0.95671 0.93877 0.92125 0.80761 0.82545 0.85664 0.82855 0.90525 0.90354 0.82335 0.95321 0.89132 0.90324 0.92462 0.88934 0.95820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 8.89 71.98 0.64 -4.51 16 2 C 0.08 2.95 1.74 44.17 0.08 3.03 16 3 H 0.06 2.29 6.20 -2.39 -0.01 2.28 16 4 C 0.52 21.86 5.80 87.65 0.51 22.36 16 5 O -0.54 -23.13 11.62 -3.08 -0.04 -23.16 16 6 N -0.54 -23.99 2.69 -635.26 -1.71 -25.69 16 7 C 0.24 11.69 4.25 85.63 0.36 12.06 16 8 C -0.53 -27.26 6.89 25.60 0.18 -27.08 16 9 H 0.05 2.74 7.79 -2.91 -0.02 2.72 16 10 C 0.03 1.66 5.46 84.65 0.46 2.12 16 11 N -0.91 -48.93 13.29 21.45 0.28 -48.65 16 12 Si 0.95 41.33 29.54 68.60 2.03 43.35 16 13 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 16 C 0.16 6.78 6.48 38.09 0.25 7.03 16 17 C -0.17 -6.68 8.97 22.39 0.20 -6.48 16 18 C -0.09 -3.10 9.95 22.36 0.22 -2.88 16 19 C 0.01 0.51 6.49 22.57 0.15 0.66 16 20 C 0.07 2.55 6.49 22.55 0.15 2.70 16 21 C -0.16 -6.92 9.06 22.49 0.20 -6.72 16 22 O -0.33 -11.15 10.42 -82.61 -0.86 -12.01 16 23 C 0.01 0.24 7.26 72.14 0.52 0.76 16 24 C 0.02 0.33 7.26 72.14 0.52 0.86 16 25 O -0.32 -9.02 10.42 -83.58 -0.87 -9.89 16 26 N -0.54 -16.98 4.63 -927.74 -4.30 -21.28 16 27 C 0.02 0.55 9.21 127.69 1.18 1.73 16 28 C 0.02 0.57 9.15 127.69 1.17 1.74 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.08 3.22 5.41 -2.38 -0.01 3.21 16 31 H 0.08 2.53 6.40 -2.39 -0.02 2.52 16 32 H 0.03 1.31 6.57 -2.39 -0.02 1.29 16 33 H 0.04 2.10 5.80 -2.39 -0.01 2.09 16 34 H 0.27 13.71 8.31 -92.72 -0.77 12.94 16 35 H 0.18 7.02 4.73 -44.40 -0.21 6.81 16 36 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 37 H 0.13 6.01 6.26 -2.91 -0.02 6.00 16 38 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.03 0.67 8.14 -2.39 -0.02 0.66 16 43 H 0.09 1.76 8.12 -2.39 -0.02 1.74 16 44 H 0.08 1.81 6.30 -2.39 -0.02 1.79 16 45 H 0.06 1.91 6.00 -2.38 -0.01 1.90 16 46 H 0.09 2.16 8.12 -2.39 -0.02 2.14 16 47 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -63.51 368.33 2.13 -61.38 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.80 Total: 28.58 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 6.79 Total: 7.37 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -5.72 Total: -95.62 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -1.77 Total: -45.06 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -63.51 2.13 -61.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610560904.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.758 kcal (2) G-P(sol) polarization free energy of solvation -63.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds