Wall clock time and date at job start Tue Mar 31 2020 18:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47352 * 2 1 4 4 O 1.45204 * 109.47444 * 120.00117 * 2 1 3 5 5 C 1.34229 * 116.99857 * 270.00329 * 4 2 1 6 6 O 1.20830 * 120.00006 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99860 * 179.97438 * 5 4 2 8 8 N 1.46507 * 109.47060 * 179.97438 * 7 5 4 9 9 C 1.46500 * 119.99993 * 270.00119 * 8 7 5 10 10 C 1.39675 * 119.99830 * 90.00001 * 8 7 5 11 11 C 1.38916 * 120.07529 * 359.72228 * 10 8 7 12 12 C 1.38103 * 119.92523 * 179.76568 * 11 10 8 13 13 C 1.38295 * 120.07208 * 0.51487 * 12 11 10 14 14 C 1.38286 * 120.14782 * 359.73637 * 13 12 11 15 15 C 1.38104 * 120.07889 * 0.02562 * 14 13 12 16 16 C 1.50698 * 109.47587 * 240.00073 * 2 1 3 17 17 O 1.21280 * 120.00203 * 256.03360 * 16 2 1 18 18 N 1.34779 * 120.00030 * 76.02141 * 16 2 1 19 19 C 1.46499 * 119.99988 * 5.37097 * 18 16 2 20 20 C 1.46498 * 120.00081 * 185.37169 * 18 16 2 21 21 C 1.50702 * 109.47304 * 90.00354 * 20 18 16 22 22 H 1.08001 * 119.99689 * 359.97438 * 21 20 18 23 23 C 1.37874 * 119.99989 * 180.02562 * 21 20 18 24 24 N 1.31519 * 120.00227 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99902 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47228 * 60.00334 * 25 23 21 27 27 H 1.48503 * 109.47130 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47200 * 299.99818 * 25 23 21 29 29 H 1.09000 * 109.46932 * 66.13647 * 1 2 3 30 30 H 1.08999 * 109.47044 * 306.13700 * 1 2 3 31 31 H 1.08993 * 109.47250 * 186.13628 * 1 2 3 32 32 H 1.09001 * 109.47124 * 299.99549 * 7 5 4 33 33 H 1.08998 * 109.47351 * 60.00141 * 7 5 4 34 34 H 1.08993 * 109.46957 * 89.99977 * 9 8 7 35 35 H 1.09000 * 109.46922 * 209.99904 * 9 8 7 36 36 H 1.08996 * 109.47244 * 329.99391 * 9 8 7 37 37 H 1.07998 * 120.03842 * 0.02562 * 11 10 8 38 38 H 1.07995 * 119.96347 * 180.25072 * 12 11 10 39 39 H 1.07997 * 119.92301 * 179.71813 * 13 12 11 40 40 H 1.08001 * 119.95625 * 179.97438 * 14 13 12 41 41 H 1.07991 * 120.03944 * 179.97438 * 15 14 13 42 42 H 1.09006 * 109.47084 * 84.81792 * 19 18 16 43 43 H 1.08994 * 109.47590 * 204.81862 * 19 18 16 44 44 H 1.09006 * 109.47202 * 324.82157 * 19 18 16 45 45 H 1.09001 * 109.47134 * 210.00388 * 20 18 16 46 46 H 1.09001 * 109.47100 * 330.00088 * 20 18 16 47 47 H 0.96998 * 120.00236 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9981 1.2519 2.2504 7 6 2.7183 -0.5772 3.5494 8 7 2.8574 0.4438 4.5909 9 6 4.1232 1.1648 4.7453 10 6 1.7831 0.7296 5.4365 11 6 0.5802 0.0509 5.2876 12 6 -0.4785 0.3326 6.1286 13 6 -0.3455 1.2967 7.1111 14 6 0.8489 1.9779 7.2586 15 6 1.9132 1.6977 6.4242 16 6 2.0324 -0.7104 -1.2304 17 8 2.4736 -1.8367 -1.1428 18 7 1.9913 -0.0941 -2.4284 19 6 1.5690 1.3058 -2.5178 20 6 2.3688 -0.8242 -3.6410 21 6 1.1505 -1.4918 -4.2253 22 1 0.1911 -1.3834 -3.7414 23 6 1.2610 -2.2417 -5.3770 24 7 2.4295 -2.3742 -5.9659 25 14 -0.2489 -3.0698 -6.1008 26 1 -1.2638 -2.0399 -6.4394 27 1 0.1338 -3.8097 -7.3301 28 1 -0.8171 -4.0174 -5.1087 29 1 -0.3633 0.4158 -0.9398 30 1 -0.3633 0.6060 0.8299 31 1 -0.3633 -1.0217 0.1098 32 1 2.0088 -1.3369 3.8774 33 1 3.6872 -1.0408 3.3639 34 1 4.1091 2.0606 4.1245 35 1 4.2547 1.4484 5.7895 36 1 4.9476 0.5219 4.4369 37 1 0.4744 -0.6992 4.5179 38 1 -1.4126 -0.1975 6.0160 39 1 -1.1764 1.5183 7.7644 40 1 0.9492 2.7305 8.0267 41 1 2.8455 2.2303 6.5397 42 1 2.4229 1.9558 -2.3267 43 1 1.1775 1.5043 -3.5155 44 1 0.7924 1.4992 -1.7776 45 1 2.7861 -0.1284 -4.3690 46 1 3.1136 -1.5804 -3.3928 47 1 2.5072 -2.9015 -6.7763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733589201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:31 Heat of formation + Delta-G solvation = -69.229756 kcal Electronic energy + Delta-G solvation = -28693.416283 eV Core-core repulsion = 24649.386432 eV Total energy + Delta-G solvation = -4044.029851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84082 -39.72687 -38.87007 -36.82068 -35.90759 -34.90733 -32.86609 -31.81952 -31.33445 -30.31653 -29.09219 -27.80672 -26.10795 -25.65916 -24.38616 -22.96234 -22.38628 -21.49759 -20.45908 -18.84394 -18.05771 -18.04740 -16.84861 -16.56436 -16.14383 -15.96020 -15.87414 -15.69093 -15.12631 -14.77139 -14.56798 -14.37589 -14.08749 -13.88987 -13.77832 -13.50000 -13.06167 -12.85219 -12.82389 -12.40908 -12.35307 -12.29048 -12.10715 -12.07922 -11.74472 -11.64856 -11.42843 -11.25343 -11.04969 -10.95596 -10.82368 -10.72107 -10.57105 -10.20261 -10.08308 -9.70304 -9.11615 -8.93903 -8.47416 -7.75017 -7.63617 -6.08542 -4.14100 1.24504 1.37538 2.11320 2.26898 2.89614 3.21005 3.29521 3.34091 3.37749 3.70607 3.88396 4.40320 4.50838 4.55840 4.64956 4.77468 4.84070 4.90447 4.94763 5.01487 5.04479 5.10192 5.21746 5.25925 5.26537 5.35989 5.48323 5.49792 5.51301 5.67326 5.71112 5.79151 5.83850 6.00799 6.06459 6.22213 6.28081 6.41295 6.44212 6.60552 6.83230 6.96396 7.16657 7.36993 7.44005 7.71056 7.87209 8.16845 8.26566 8.80806 8.95904 9.51042 10.99506 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.002284 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.085146 B =12257.953939 C =12713.651937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.072 3.928 3 H 0.100 0.900 4 O -0.328 6.328 5 C 0.432 3.568 6 O -0.498 6.498 7 C 0.133 3.867 8 N -0.614 5.614 9 C 0.092 3.908 10 C 0.219 3.781 11 C -0.195 4.195 12 C -0.072 4.072 13 C -0.178 4.178 14 C -0.075 4.075 15 C -0.191 4.191 16 C 0.510 3.490 17 O -0.521 6.521 18 N -0.596 5.596 19 C 0.074 3.926 20 C 0.246 3.754 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 9.268 24.654 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 H 0.118 0.882 4 O -0.243 6.243 5 C 0.272 3.728 6 O -0.385 6.385 7 C 0.007 3.993 8 N -0.325 5.325 9 C -0.051 4.051 10 C 0.119 3.881 11 C -0.217 4.217 12 C -0.091 4.091 13 C -0.198 4.198 14 C -0.094 4.094 15 C -0.213 4.213 16 C 0.294 3.706 17 O -0.397 6.397 18 N -0.330 5.330 19 C -0.070 4.070 20 C 0.127 3.873 21 C -0.569 4.569 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.557 8.907 24.358 25.942 hybrid contribution -0.920 -0.164 -0.767 1.209 sum -1.478 8.743 23.591 25.202 Atomic orbital electron populations 1.22147 0.92136 1.04090 1.03749 1.22644 0.96029 0.97280 0.82738 0.88177 1.86634 1.76439 1.41633 1.19584 1.24787 0.75033 0.86737 0.86217 1.90651 1.47298 1.16552 1.83993 1.20907 1.04921 0.90494 0.82955 1.46034 1.11922 1.42118 1.32430 1.21736 0.84163 0.96960 1.02214 1.17794 0.87177 0.93526 0.89631 1.20710 0.93004 1.04285 1.03666 1.20898 0.97717 0.96434 0.94007 1.20925 0.98166 0.99714 1.01022 1.20887 0.92659 0.98116 0.97707 1.20665 1.00406 1.01368 0.98890 1.19771 0.80178 0.86826 0.83796 1.90691 1.45210 1.18397 1.85358 1.48085 1.65271 1.11907 1.07741 1.21830 0.98973 0.82660 1.03549 1.19364 0.96693 0.92055 0.79162 1.21381 0.94750 1.31556 1.09226 0.92423 1.24940 0.96285 0.96109 0.96722 1.69921 1.23221 1.40379 1.19693 0.86539 0.82742 0.79632 0.78402 1.20213 1.21130 1.20123 0.89525 0.91347 0.90635 0.86236 0.86023 0.92818 0.90827 0.91161 0.86323 0.86124 0.86503 0.86231 0.85982 0.93472 0.90046 0.92277 0.94646 0.93578 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.19 37.15 0.34 -2.04 16 2 C 0.07 1.21 2.14 -27.89 -0.06 1.15 16 3 H 0.10 1.58 6.31 -51.93 -0.33 1.25 16 4 O -0.33 -5.34 9.47 -45.75 -0.43 -5.77 16 5 C 0.43 5.93 8.00 36.00 0.29 6.22 16 6 O -0.50 -7.89 15.65 -18.75 -0.29 -8.18 16 7 C 0.13 1.29 5.79 -5.19 -0.03 1.26 16 8 N -0.61 -6.04 2.50 -181.00 -0.45 -6.49 16 9 C 0.09 0.70 10.23 59.85 0.61 1.31 16 10 C 0.22 2.33 6.55 -83.78 -0.55 1.78 16 11 C -0.19 -2.05 9.21 -39.38 -0.36 -2.41 16 12 C -0.07 -0.68 10.04 -39.61 -0.40 -1.08 16 13 C -0.18 -1.59 10.04 -39.54 -0.40 -1.98 16 14 C -0.08 -0.66 10.04 -39.61 -0.40 -1.05 16 15 C -0.19 -1.83 9.21 -39.38 -0.36 -2.19 16 16 C 0.51 10.94 6.95 -10.99 -0.08 10.87 16 17 O -0.52 -13.41 16.13 -13.54 -0.22 -13.63 16 18 N -0.60 -12.73 2.86 -182.95 -0.52 -13.25 16 19 C 0.07 1.18 9.79 59.85 0.59 1.76 16 20 C 0.25 6.40 5.18 -5.19 -0.03 6.37 16 21 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 22 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 25 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H 0.09 1.21 6.33 -51.93 -0.33 0.88 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.12 0.98 6.21 -51.93 -0.32 0.65 16 33 H 0.12 0.92 7.89 -51.93 -0.41 0.51 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.44 6.20 -51.93 -0.32 0.12 16 36 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 37 H 0.12 1.17 6.15 -52.49 -0.32 0.85 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.96 6.14 -52.49 -0.32 0.64 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 44 H 0.06 0.80 4.92 -51.93 -0.26 0.54 16 45 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 46 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -35.58 392.30 -8.29 -43.87 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.74 Total: 0.07 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -1.25 Total: 6.46 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.24 Total: -45.32 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.94 Total: -27.58 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.58 -8.29 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733589201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.358 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds