Wall clock time and date at job start Tue Mar 31 2020 18:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47352 * 2 1 4 4 O 1.45204 * 109.47444 * 120.00117 * 2 1 3 5 5 C 1.34229 * 116.99857 * 270.00329 * 4 2 1 6 6 O 1.20830 * 120.00006 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99860 * 179.97438 * 5 4 2 8 8 N 1.46507 * 109.47060 * 179.97438 * 7 5 4 9 9 C 1.46500 * 119.99993 * 270.00119 * 8 7 5 10 10 C 1.39675 * 119.99830 * 90.00001 * 8 7 5 11 11 C 1.38916 * 120.07529 * 359.72228 * 10 8 7 12 12 C 1.38103 * 119.92523 * 179.76568 * 11 10 8 13 13 C 1.38295 * 120.07208 * 0.51487 * 12 11 10 14 14 C 1.38286 * 120.14782 * 359.73637 * 13 12 11 15 15 C 1.38104 * 120.07889 * 0.02562 * 14 13 12 16 16 C 1.50698 * 109.47587 * 240.00073 * 2 1 3 17 17 O 1.21280 * 120.00203 * 256.03360 * 16 2 1 18 18 N 1.34779 * 120.00030 * 76.02141 * 16 2 1 19 19 C 1.46499 * 119.99988 * 5.37097 * 18 16 2 20 20 C 1.46498 * 120.00081 * 185.37169 * 18 16 2 21 21 C 1.50702 * 109.47304 * 90.00354 * 20 18 16 22 22 H 1.08001 * 119.99689 * 359.97438 * 21 20 18 23 23 C 1.37874 * 119.99989 * 180.02562 * 21 20 18 24 24 N 1.31519 * 120.00227 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99902 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47228 * 60.00334 * 25 23 21 27 27 H 1.48503 * 109.47130 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47200 * 299.99818 * 25 23 21 29 29 H 1.09000 * 109.46932 * 66.13647 * 1 2 3 30 30 H 1.08999 * 109.47044 * 306.13700 * 1 2 3 31 31 H 1.08993 * 109.47250 * 186.13628 * 1 2 3 32 32 H 1.09001 * 109.47124 * 299.99549 * 7 5 4 33 33 H 1.08998 * 109.47351 * 60.00141 * 7 5 4 34 34 H 1.08993 * 109.46957 * 89.99977 * 9 8 7 35 35 H 1.09000 * 109.46922 * 209.99904 * 9 8 7 36 36 H 1.08996 * 109.47244 * 329.99391 * 9 8 7 37 37 H 1.07998 * 120.03842 * 0.02562 * 11 10 8 38 38 H 1.07995 * 119.96347 * 180.25072 * 12 11 10 39 39 H 1.07997 * 119.92301 * 179.71813 * 13 12 11 40 40 H 1.08001 * 119.95625 * 179.97438 * 14 13 12 41 41 H 1.07991 * 120.03944 * 179.97438 * 15 14 13 42 42 H 1.09006 * 109.47084 * 84.81792 * 19 18 16 43 43 H 1.08994 * 109.47590 * 204.81862 * 19 18 16 44 44 H 1.09006 * 109.47202 * 324.82157 * 19 18 16 45 45 H 1.09001 * 109.47134 * 210.00388 * 20 18 16 46 46 H 1.09001 * 109.47100 * 330.00088 * 20 18 16 47 47 H 0.96998 * 120.00236 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9981 1.2519 2.2504 7 6 2.7183 -0.5772 3.5494 8 7 2.8574 0.4438 4.5909 9 6 4.1232 1.1648 4.7453 10 6 1.7831 0.7296 5.4365 11 6 0.5802 0.0509 5.2876 12 6 -0.4785 0.3326 6.1286 13 6 -0.3455 1.2967 7.1111 14 6 0.8489 1.9779 7.2586 15 6 1.9132 1.6977 6.4242 16 6 2.0324 -0.7104 -1.2304 17 8 2.4736 -1.8367 -1.1428 18 7 1.9913 -0.0941 -2.4284 19 6 1.5690 1.3058 -2.5178 20 6 2.3688 -0.8242 -3.6410 21 6 1.1505 -1.4918 -4.2253 22 1 0.1911 -1.3834 -3.7414 23 6 1.2610 -2.2417 -5.3770 24 7 2.4295 -2.3742 -5.9659 25 14 -0.2489 -3.0698 -6.1008 26 1 -1.2638 -2.0399 -6.4394 27 1 0.1338 -3.8097 -7.3301 28 1 -0.8171 -4.0174 -5.1087 29 1 -0.3633 0.4158 -0.9398 30 1 -0.3633 0.6060 0.8299 31 1 -0.3633 -1.0217 0.1098 32 1 2.0088 -1.3369 3.8774 33 1 3.6872 -1.0408 3.3639 34 1 4.1091 2.0606 4.1245 35 1 4.2547 1.4484 5.7895 36 1 4.9476 0.5219 4.4369 37 1 0.4744 -0.6992 4.5179 38 1 -1.4126 -0.1975 6.0160 39 1 -1.1764 1.5183 7.7644 40 1 0.9492 2.7305 8.0267 41 1 2.8455 2.2303 6.5397 42 1 2.4229 1.9558 -2.3267 43 1 1.1775 1.5043 -3.5155 44 1 0.7924 1.4992 -1.7776 45 1 2.7861 -0.1284 -4.3690 46 1 3.1136 -1.5804 -3.3928 47 1 2.5072 -2.9015 -6.7763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733589201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:30 Heat of formation + Delta-G solvation = -89.339662 kcal Electronic energy + Delta-G solvation = -28694.288314 eV Core-core repulsion = 24649.386432 eV Total energy + Delta-G solvation = -4044.901882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.00268 -40.78555 -40.15868 -37.87799 -36.84178 -36.67856 -34.87095 -33.18585 -32.08724 -31.04960 -29.89449 -29.63334 -27.61273 -26.48876 -25.90796 -24.44899 -23.25827 -22.49203 -21.36523 -20.41877 -19.18460 -18.77364 -18.70163 -18.19237 -17.45722 -17.24314 -16.90542 -16.58640 -16.41431 -16.24577 -16.02865 -15.31685 -15.01898 -14.89870 -14.65715 -14.56454 -14.31256 -14.24324 -13.92649 -13.70427 -13.57709 -13.48837 -13.37251 -13.17567 -13.01217 -12.88747 -12.81004 -12.66666 -12.53894 -12.28917 -12.20743 -11.96149 -11.85762 -11.74860 -11.70223 -10.86422 -10.65102 -10.64197 -9.80663 -9.55040 -8.35126 -8.23892 -6.38943 0.55356 0.64922 1.04646 1.23311 1.37539 1.41725 1.48376 1.57380 2.05418 2.34286 2.44774 3.02081 3.06211 3.37051 3.54248 3.76499 3.79332 3.85340 3.94969 4.11331 4.24686 4.25991 4.35844 4.39878 4.50553 4.53809 4.59789 4.61604 4.64327 4.71213 4.81893 4.83514 4.90359 4.92395 5.03474 5.15467 5.18230 5.29026 5.33285 5.49700 5.61864 5.76462 5.76500 5.94345 6.01762 6.13494 6.46529 6.51943 6.65680 6.69487 7.17140 7.34238 8.83492 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.002284 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.085146 B =12257.953939 C =12713.651937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.082 3.918 3 H 0.115 0.885 4 O -0.344 6.344 5 C 0.434 3.566 6 O -0.520 6.520 7 C 0.135 3.865 8 N -0.617 5.617 9 C 0.088 3.912 10 C 0.200 3.800 11 C -0.214 4.214 12 C -0.083 4.083 13 C -0.185 4.185 14 C -0.080 4.080 15 C -0.201 4.201 16 C 0.502 3.498 17 O -0.576 6.576 18 N -0.601 5.601 19 C 0.068 3.932 20 C 0.259 3.741 21 C -0.545 4.545 22 H 0.058 0.942 23 C 0.008 3.992 24 N -0.928 5.928 25 Si 0.969 3.031 26 H -0.259 1.259 27 H -0.280 1.280 28 H -0.276 1.276 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.135 0.865 33 H 0.146 0.854 34 H 0.038 0.962 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.030 0.970 46 H 0.001 0.999 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 10.384 26.182 28.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.133 0.867 4 O -0.260 6.260 5 C 0.275 3.725 6 O -0.408 6.408 7 C 0.009 3.991 8 N -0.328 5.328 9 C -0.054 4.054 10 C 0.100 3.900 11 C -0.236 4.236 12 C -0.101 4.101 13 C -0.205 4.205 14 C -0.099 4.099 15 C -0.223 4.223 16 C 0.289 3.711 17 O -0.456 6.456 18 N -0.333 5.333 19 C -0.074 4.074 20 C 0.138 3.862 21 C -0.584 4.584 22 H 0.076 0.924 23 C -0.191 4.191 24 N -0.567 5.567 25 Si 0.793 3.207 26 H -0.184 1.184 27 H -0.205 1.205 28 H -0.202 1.202 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.153 0.847 33 H 0.164 0.836 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.048 0.952 46 H 0.019 0.981 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.025 10.085 25.911 27.878 hybrid contribution -0.423 -0.448 -1.164 1.317 sum -2.448 9.637 24.747 26.670 Atomic orbital electron populations 1.22132 0.90196 1.04097 1.05001 1.22457 0.97201 0.96806 0.81142 0.86726 1.86661 1.76823 1.42493 1.19987 1.25687 0.73996 0.86529 0.86242 1.90631 1.48439 1.17546 1.84226 1.21150 1.06345 0.90573 0.81045 1.46191 1.12360 1.42335 1.31922 1.21866 0.83886 0.96613 1.03033 1.18044 0.87525 0.94141 0.90319 1.20880 0.93583 1.04837 1.04279 1.21169 0.98121 0.96794 0.94032 1.21242 0.98924 0.99319 1.01008 1.21232 0.92347 0.98356 0.97919 1.20934 1.01342 1.01244 0.98804 1.20615 0.79039 0.86396 0.85045 1.90652 1.47587 1.20959 1.86354 1.48073 1.64947 1.13750 1.06543 1.22129 1.00901 0.79715 1.04655 1.18867 0.95246 0.91273 0.80793 1.21658 0.95131 1.32028 1.09553 0.92400 1.25873 0.99466 0.96638 0.97153 1.70045 1.25400 1.41085 1.20167 0.85451 0.79057 0.78733 0.77490 1.18372 1.20463 1.20189 0.88754 0.89290 0.91497 0.84713 0.83647 0.94328 0.89223 0.89460 0.86352 0.84747 0.84620 0.83976 0.84691 0.91047 0.90059 0.89301 0.95244 0.98100 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 9.19 71.98 0.66 -3.65 16 2 C 0.08 2.70 2.14 29.85 0.06 2.77 16 3 H 0.12 3.41 6.31 -2.39 -0.02 3.40 16 4 O -0.34 -11.03 9.47 -45.20 -0.43 -11.46 16 5 C 0.43 11.46 8.00 71.23 0.57 12.03 16 6 O -0.52 -15.86 15.65 21.95 0.34 -15.52 16 7 C 0.14 2.44 5.79 85.63 0.50 2.94 16 8 N -0.62 -11.26 2.50 -726.56 -1.81 -13.07 16 9 C 0.09 1.21 10.23 127.77 1.31 2.52 16 10 C 0.20 4.00 6.55 38.22 0.25 4.26 16 11 C -0.21 -4.29 9.21 22.40 0.21 -4.09 16 12 C -0.08 -1.46 10.04 22.25 0.22 -1.24 16 13 C -0.19 -2.95 10.04 22.29 0.22 -2.72 16 14 C -0.08 -1.24 10.04 22.25 0.22 -1.02 16 15 C -0.20 -3.52 9.21 22.40 0.21 -3.32 16 16 C 0.50 21.87 6.95 87.66 0.61 22.48 16 17 O -0.58 -30.87 16.13 15.23 0.25 -30.62 16 18 N -0.60 -25.87 2.86 -851.13 -2.43 -28.30 16 19 C 0.07 2.07 9.79 127.77 1.25 3.32 16 20 C 0.26 13.96 5.18 85.63 0.44 14.40 16 21 C -0.55 -31.00 9.39 25.60 0.24 -30.76 16 22 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 23 C 0.01 0.45 5.46 84.65 0.46 0.92 16 24 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 25 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 26 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 28 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 29 H 0.09 2.42 6.33 -2.39 -0.02 2.41 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.14 2.03 6.21 -2.39 -0.01 2.02 16 33 H 0.15 1.93 7.89 -2.39 -0.02 1.91 16 34 H 0.04 0.64 8.14 -2.39 -0.02 0.63 16 35 H 0.09 0.91 6.20 -2.39 -0.01 0.90 16 36 H 0.09 0.88 7.89 -2.39 -0.02 0.86 16 37 H 0.12 2.25 6.15 -2.91 -0.02 2.24 16 38 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 39 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.14 1.88 6.14 -2.92 -0.02 1.86 16 42 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.08 2.49 8.03 -2.39 -0.02 2.47 16 44 H 0.09 2.18 4.92 -2.38 -0.01 2.17 16 45 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 46 H 0.00 0.05 7.36 -2.39 -0.02 0.04 16 47 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -79.24 392.30 6.64 -72.60 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.98 Total: 16.66 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 7.44 Total: 18.83 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -3.96 Total: -96.80 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: 0.16 Total: -57.61 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -79.24 6.64 -72.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733589201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.741 kcal (2) G-P(sol) polarization free energy of solvation -79.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds