Wall clock time and date at job start Tue Mar 31 2020 18:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47260 * 2 1 4 4 C 1.39053 * 120.00253 * 270.00114 * 3 2 1 5 5 C 1.39229 * 119.92472 * 185.96604 * 4 3 2 6 6 C 1.37597 * 120.07538 * 179.76317 * 5 4 3 7 7 C 1.39862 * 119.91961 * 0.53136 * 6 5 4 8 8 C 1.47413 * 120.07277 * 179.70114 * 7 6 5 9 9 O 1.21635 * 120.00281 * 173.82617 * 8 7 6 10 10 N 1.34780 * 120.00058 * 353.82807 * 8 7 6 11 11 C 1.36900 * 120.00081 * 163.89310 * 10 8 7 12 12 H 1.08005 * 120.00351 * 29.83746 * 11 10 8 13 13 C 1.39021 * 120.00578 * 209.83753 * 11 10 8 14 14 N 1.31387 * 119.99318 * 22.06805 * 13 11 10 15 15 Si 1.86791 * 120.00498 * 202.07590 * 13 11 10 16 16 H 1.48509 * 109.47156 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47388 * 119.99492 * 15 13 11 18 18 H 1.48503 * 109.46973 * 239.99789 * 15 13 11 19 19 C 1.46497 * 119.99962 * 343.89821 * 10 8 7 20 20 C 1.50699 * 109.47577 * 99.19841 * 19 10 8 21 21 O 1.20831 * 119.99724 * 0.02562 * 20 19 10 22 22 O 1.34225 * 120.00072 * 179.97438 * 20 19 10 23 23 C 1.39855 * 119.85546 * 359.71599 * 7 6 5 24 24 C 1.37596 * 119.92206 * 0.02562 * 23 7 6 25 25 C 1.46505 * 119.99519 * 90.00023 * 3 2 1 26 26 C 1.52998 * 109.47220 * 296.04771 * 25 3 2 27 27 C 1.53000 * 109.47126 * 56.05031 * 25 3 2 28 28 H 1.09001 * 109.47341 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47114 * 299.99999 * 1 2 3 30 30 H 1.09005 * 109.47035 * 59.99894 * 1 2 3 31 31 H 1.08997 * 109.46491 * 120.00360 * 2 1 3 32 32 H 1.09009 * 109.46840 * 240.00220 * 2 1 3 33 33 H 1.07999 * 119.96461 * 359.97438 * 5 4 3 34 34 H 1.08002 * 120.04162 * 180.25266 * 6 5 4 35 35 H 0.96999 * 120.00110 * 180.02562 * 14 13 11 36 36 H 1.09003 * 109.47303 * 219.20046 * 19 10 8 37 37 H 1.09001 * 109.47185 * 339.19537 * 19 10 8 38 38 H 0.96700 * 116.99790 * 179.97438 * 22 20 19 39 39 H 1.07995 * 120.04064 * 179.97438 * 23 7 6 40 40 H 1.08001 * 119.96093 * 179.97438 * 24 23 7 41 41 H 1.09004 * 109.46398 * 176.04908 * 25 3 2 42 42 H 1.09009 * 109.46987 * 300.00061 * 26 25 3 43 43 H 1.08992 * 109.47151 * 60.00306 * 26 25 3 44 44 H 1.08996 * 109.47117 * 180.02562 * 26 25 3 45 45 H 1.08997 * 109.47056 * 59.99846 * 27 25 3 46 46 H 1.08996 * 109.46792 * 179.97438 * 27 25 3 47 47 H 1.08992 * 109.47143 * 299.99631 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2502 2.0367 -1.2042 5 6 2.8306 3.3022 -1.2056 6 6 3.0658 3.9517 -2.3956 7 6 2.7109 3.3438 -3.6042 8 6 2.9553 4.0393 -4.8807 9 8 2.7511 3.4666 -5.9342 10 7 3.4051 5.3098 -4.8805 11 6 3.9422 5.8460 -6.0199 12 1 3.6036 5.5071 -6.9879 13 6 4.9235 6.8267 -5.9312 14 7 5.6414 6.9403 -4.8367 15 14 5.2212 7.9829 -7.3677 16 1 4.2881 7.6488 -8.4737 17 1 4.9912 9.3837 -6.9317 18 1 6.6213 7.8351 -7.8402 19 6 3.3193 6.1171 -3.6610 20 6 4.6558 6.1190 -2.9648 21 8 5.5849 5.5090 -3.4389 22 8 4.8144 6.7991 -1.8185 23 6 2.1232 2.0747 -3.5989 24 6 1.8957 1.4286 -2.4055 25 6 2.2626 2.0717 1.2688 26 6 0.9428 2.2269 2.0272 27 6 3.2431 1.2554 2.1133 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.0998 3.7733 -0.2717 34 1 3.5199 4.9316 -2.3963 35 1 6.3259 7.6248 -4.7745 36 1 3.0434 7.1392 -3.9205 37 1 2.5647 5.6943 -2.9978 38 1 5.6897 6.7704 -1.4086 39 1 1.8475 1.6027 -4.5303 40 1 1.4416 0.4487 -2.4007 41 1 2.6859 3.0565 1.0708 42 1 0.2443 2.8085 1.4255 43 1 0.5196 1.2422 2.2251 44 1 1.1244 2.7410 2.9710 45 1 4.1833 1.1449 1.5730 46 1 3.4251 1.7694 3.0570 47 1 2.8198 0.2707 2.3112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737109372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:03 Heat of formation + Delta-G solvation = -3.467123 kcal Electronic energy + Delta-G solvation = -30347.256916 eV Core-core repulsion = 26306.078747 eV Total energy + Delta-G solvation = -4041.178169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.29000 -39.27740 -38.04168 -36.60044 -35.18147 -34.08616 -33.21948 -32.10230 -31.28593 -30.25847 -28.22405 -27.69028 -27.41460 -25.03460 -23.70733 -22.68820 -21.42272 -20.95297 -20.09120 -19.15902 -17.73215 -17.01140 -16.84365 -16.42426 -15.73096 -15.59472 -15.15843 -14.75123 -14.49781 -14.31379 -14.22373 -13.86268 -13.65703 -13.56285 -13.31100 -13.22794 -12.86555 -12.74561 -12.61868 -12.37780 -12.05747 -11.90586 -11.75399 -11.65684 -11.65179 -11.42084 -11.22140 -11.04381 -10.93789 -10.68899 -10.51803 -10.37165 -10.01429 -9.85980 -9.50052 -9.22915 -8.97930 -8.57871 -8.47449 -7.64118 -7.04900 -5.92385 -3.93618 1.64996 1.85692 3.07547 3.15251 3.28158 3.35144 3.68250 3.71639 4.10386 4.30056 4.55991 4.62752 4.77851 4.81820 4.86926 4.97545 5.10708 5.16950 5.20690 5.31092 5.32636 5.37940 5.39329 5.52564 5.59774 5.65279 5.70859 5.75578 5.83236 5.89674 5.90031 5.92746 6.04627 6.06673 6.14729 6.33073 6.45579 6.54951 6.63805 6.79085 7.03701 7.14796 7.39713 7.56632 7.69870 7.83454 8.11525 8.43658 9.10302 9.25013 9.52583 9.87149 10.68024 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019703 B = 0.003513 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.795798 B = 7969.362469 C = 8980.604747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.118 3.882 3 N -0.621 5.621 4 C 0.224 3.776 5 C -0.205 4.205 6 C -0.086 4.086 7 C -0.166 4.166 8 C 0.515 3.485 9 O -0.573 6.573 10 N -0.432 5.432 11 C -0.303 4.303 12 H 0.104 0.896 13 C 0.027 3.973 14 N -0.837 5.837 15 Si 0.918 3.082 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.283 1.283 19 C 0.126 3.874 20 C 0.448 3.552 21 O -0.422 6.422 22 O -0.550 6.550 23 C -0.024 4.024 24 C -0.207 4.207 25 C 0.138 3.862 26 C -0.165 4.165 27 C -0.164 4.164 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.157 0.843 35 H 0.256 0.744 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.389 0.611 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.527 -7.445 16.923 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.005 4.005 3 N -0.332 5.332 4 C 0.122 3.878 5 C -0.227 4.227 6 C -0.105 4.105 7 C -0.171 4.171 8 C 0.306 3.694 9 O -0.456 6.456 10 N -0.152 5.152 11 C -0.429 4.429 12 H 0.122 0.878 13 C -0.176 4.176 14 N -0.480 5.480 15 Si 0.745 3.255 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.209 1.209 19 C -0.001 4.001 20 C 0.285 3.715 21 O -0.300 6.300 22 O -0.363 6.363 23 C -0.044 4.044 24 C -0.230 4.230 25 C 0.034 3.966 26 C -0.223 4.223 27 C -0.222 4.222 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.174 0.826 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.245 0.755 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.608 -7.882 16.223 19.576 hybrid contribution 1.067 0.715 -0.271 1.313 sum -6.542 -7.167 15.952 18.672 Atomic orbital electron populations 1.22426 0.96665 1.01688 1.02986 1.21320 0.93877 0.82913 1.02406 1.46471 1.71409 1.12784 1.02548 1.17924 0.92766 0.91569 0.85530 1.20614 1.08237 0.95453 0.98375 1.22692 0.95638 1.00675 0.91472 1.20106 1.06128 0.97015 0.93849 1.18091 0.82135 0.81105 0.88084 1.90595 1.55808 1.66082 1.33162 1.43153 1.53819 1.09098 1.09107 1.19631 1.18131 1.18895 0.86285 0.87815 1.25614 0.93988 0.99442 0.98577 1.71294 1.19207 1.30368 1.27123 0.86003 0.78319 0.79869 0.81354 1.19162 1.20648 1.20873 1.21287 0.91773 0.98835 0.88166 1.22658 0.91716 0.79032 0.78123 1.90624 1.40662 1.39733 1.59002 1.84485 1.39760 1.72159 1.39935 1.20977 0.93012 0.92945 0.97464 1.20541 1.09865 1.01592 0.90964 1.21042 0.95139 0.96978 0.83429 1.22326 0.97778 1.02098 1.00130 1.22186 0.99658 1.00475 0.99881 0.92282 0.91984 0.92058 0.91047 0.90767 0.86065 0.82628 0.93287 0.88954 0.87809 0.75523 0.85284 0.86177 0.88814 0.92150 0.92172 0.91956 0.92096 0.91681 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 9.91 37.16 0.37 -1.12 16 2 C 0.12 1.08 5.26 -4.04 -0.02 1.06 16 3 N -0.62 -6.96 2.52 -164.17 -0.41 -7.37 16 4 C 0.22 3.26 6.54 -83.85 -0.55 2.72 16 5 C -0.20 -3.26 9.28 -39.45 -0.37 -3.62 16 6 C -0.09 -1.65 7.63 -39.21 -0.30 -1.95 16 7 C -0.17 -3.56 5.74 -104.95 -0.60 -4.16 16 8 C 0.51 13.33 7.46 -12.52 -0.09 13.24 16 9 O -0.57 -16.39 16.15 5.25 0.08 -16.30 16 10 N -0.43 -11.27 2.22 -124.16 -0.28 -11.54 16 11 C -0.30 -8.51 9.09 -15.00 -0.14 -8.65 16 12 H 0.10 3.04 7.53 -52.48 -0.40 2.65 16 13 C 0.03 0.71 5.03 -17.45 -0.09 0.62 16 14 N -0.84 -22.69 7.02 55.50 0.39 -22.30 16 15 Si 0.92 20.87 29.61 -169.99 -5.03 15.84 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C 0.13 2.78 4.89 -5.20 -0.03 2.76 16 20 C 0.45 10.07 3.67 36.01 0.13 10.20 16 21 O -0.42 -11.26 13.88 -18.75 -0.26 -11.52 16 22 O -0.55 -10.02 13.41 -39.24 -0.53 -10.55 16 23 C -0.02 -0.45 9.58 -39.21 -0.38 -0.83 16 24 C -0.21 -3.18 9.00 -39.45 -0.35 -3.54 16 25 C 0.14 1.30 3.19 -67.93 -0.22 1.08 16 26 C -0.17 -1.31 8.38 37.16 0.31 -0.99 16 27 C -0.16 -1.31 9.09 37.16 0.34 -0.97 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.50 5.42 -51.93 -0.28 0.21 16 30 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 31 H 0.07 0.55 6.23 -51.93 -0.32 0.23 16 32 H 0.07 0.71 6.46 -51.92 -0.34 0.37 16 33 H 0.12 1.66 5.72 -52.49 -0.30 1.36 16 34 H 0.16 3.08 1.63 -72.57 -0.12 2.96 16 35 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.09 2.00 8.02 -51.93 -0.42 1.58 16 37 H 0.10 1.99 4.89 -51.93 -0.25 1.74 16 38 H 0.39 5.66 9.10 45.56 0.41 6.08 16 39 H 0.13 2.41 7.65 -52.49 -0.40 2.00 16 40 H 0.12 1.54 6.07 -52.49 -0.32 1.22 16 41 H 0.09 0.95 5.28 -51.93 -0.27 0.67 16 42 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.06 0.44 6.03 -51.93 -0.31 0.13 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.42 6.54 -51.93 -0.34 0.08 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -34.07 363.31 -7.85 -41.92 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.31 Total: 10.50 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -1.98 Total: 5.85 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: -0.30 Total: -41.21 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -0.70 Total: -38.37 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.07 -7.85 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737109372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.451 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds