Wall clock time and date at job start Tue Mar 31 2020 18:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47260 * 2 1 4 4 C 1.39053 * 120.00253 * 270.00114 * 3 2 1 5 5 C 1.39229 * 119.92472 * 185.96604 * 4 3 2 6 6 C 1.37597 * 120.07538 * 179.76317 * 5 4 3 7 7 C 1.39862 * 119.91961 * 0.53136 * 6 5 4 8 8 C 1.47413 * 120.07277 * 179.70114 * 7 6 5 9 9 O 1.21635 * 120.00281 * 173.82617 * 8 7 6 10 10 N 1.34780 * 120.00058 * 353.82807 * 8 7 6 11 11 C 1.36900 * 120.00081 * 163.89310 * 10 8 7 12 12 H 1.08005 * 120.00351 * 29.83746 * 11 10 8 13 13 C 1.39021 * 120.00578 * 209.83753 * 11 10 8 14 14 N 1.31387 * 119.99318 * 22.06805 * 13 11 10 15 15 Si 1.86791 * 120.00498 * 202.07590 * 13 11 10 16 16 H 1.48509 * 109.47156 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47388 * 119.99492 * 15 13 11 18 18 H 1.48503 * 109.46973 * 239.99789 * 15 13 11 19 19 C 1.46497 * 119.99962 * 343.89821 * 10 8 7 20 20 C 1.50699 * 109.47577 * 99.19841 * 19 10 8 21 21 O 1.20831 * 119.99724 * 0.02562 * 20 19 10 22 22 O 1.34225 * 120.00072 * 179.97438 * 20 19 10 23 23 C 1.39855 * 119.85546 * 359.71599 * 7 6 5 24 24 C 1.37596 * 119.92206 * 0.02562 * 23 7 6 25 25 C 1.46505 * 119.99519 * 90.00023 * 3 2 1 26 26 C 1.52998 * 109.47220 * 296.04771 * 25 3 2 27 27 C 1.53000 * 109.47126 * 56.05031 * 25 3 2 28 28 H 1.09001 * 109.47341 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47114 * 299.99999 * 1 2 3 30 30 H 1.09005 * 109.47035 * 59.99894 * 1 2 3 31 31 H 1.08997 * 109.46491 * 120.00360 * 2 1 3 32 32 H 1.09009 * 109.46840 * 240.00220 * 2 1 3 33 33 H 1.07999 * 119.96461 * 359.97438 * 5 4 3 34 34 H 1.08002 * 120.04162 * 180.25266 * 6 5 4 35 35 H 0.96999 * 120.00110 * 180.02562 * 14 13 11 36 36 H 1.09003 * 109.47303 * 219.20046 * 19 10 8 37 37 H 1.09001 * 109.47185 * 339.19537 * 19 10 8 38 38 H 0.96700 * 116.99790 * 179.97438 * 22 20 19 39 39 H 1.07995 * 120.04064 * 179.97438 * 23 7 6 40 40 H 1.08001 * 119.96093 * 179.97438 * 24 23 7 41 41 H 1.09004 * 109.46398 * 176.04908 * 25 3 2 42 42 H 1.09009 * 109.46987 * 300.00061 * 26 25 3 43 43 H 1.08992 * 109.47151 * 60.00306 * 26 25 3 44 44 H 1.08996 * 109.47117 * 180.02562 * 26 25 3 45 45 H 1.08997 * 109.47056 * 59.99846 * 27 25 3 46 46 H 1.08996 * 109.46792 * 179.97438 * 27 25 3 47 47 H 1.08992 * 109.47143 * 299.99631 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2502 2.0367 -1.2042 5 6 2.8306 3.3022 -1.2056 6 6 3.0658 3.9517 -2.3956 7 6 2.7109 3.3438 -3.6042 8 6 2.9553 4.0393 -4.8807 9 8 2.7511 3.4666 -5.9342 10 7 3.4051 5.3098 -4.8805 11 6 3.9422 5.8460 -6.0199 12 1 3.6036 5.5071 -6.9879 13 6 4.9235 6.8267 -5.9312 14 7 5.6414 6.9403 -4.8367 15 14 5.2212 7.9829 -7.3677 16 1 4.2881 7.6488 -8.4737 17 1 4.9912 9.3837 -6.9317 18 1 6.6213 7.8351 -7.8402 19 6 3.3193 6.1171 -3.6610 20 6 4.6558 6.1190 -2.9648 21 8 5.5849 5.5090 -3.4389 22 8 4.8144 6.7991 -1.8185 23 6 2.1232 2.0747 -3.5989 24 6 1.8957 1.4286 -2.4055 25 6 2.2626 2.0717 1.2688 26 6 0.9428 2.2269 2.0272 27 6 3.2431 1.2554 2.1133 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.0998 3.7733 -0.2717 34 1 3.5199 4.9316 -2.3963 35 1 6.3259 7.6248 -4.7745 36 1 3.0434 7.1392 -3.9205 37 1 2.5647 5.6943 -2.9978 38 1 5.6897 6.7704 -1.4086 39 1 1.8475 1.6027 -4.5303 40 1 1.4416 0.4487 -2.4007 41 1 2.6859 3.0565 1.0708 42 1 0.2443 2.8085 1.4255 43 1 0.5196 1.2422 2.2251 44 1 1.1244 2.7410 2.9710 45 1 4.1833 1.1449 1.5730 46 1 3.4251 1.7694 3.0570 47 1 2.8198 0.2707 2.3112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737109372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:02 Heat of formation + Delta-G solvation = -24.868100 kcal Electronic energy + Delta-G solvation = -30348.184932 eV Core-core repulsion = 26306.078747 eV Total energy + Delta-G solvation = -4042.106185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.90914 -40.57249 -39.76022 -37.88490 -37.01228 -35.94369 -34.33093 -33.69369 -32.47363 -31.67756 -29.61246 -29.24644 -28.07076 -26.88681 -24.65727 -24.08061 -22.67266 -22.59125 -21.48323 -20.42744 -19.07072 -18.79022 -18.50499 -18.00986 -17.40364 -16.96986 -16.66330 -16.45747 -16.00586 -15.49656 -15.35965 -15.22919 -14.97926 -14.88666 -14.73429 -14.43574 -14.11252 -13.79919 -13.59627 -13.49441 -13.47030 -13.31542 -13.06675 -12.99868 -12.86165 -12.62958 -12.58475 -12.38880 -12.16180 -12.10866 -11.78964 -11.71407 -11.62051 -11.22844 -11.16379 -10.89917 -10.75646 -10.47101 -9.90437 -9.61483 -8.20719 -7.93687 -6.03822 0.18169 0.50159 1.33857 1.40178 1.55005 1.93589 1.99675 2.14860 2.28244 2.62801 2.93264 2.99450 3.19210 3.75437 3.88699 3.99003 4.07958 4.17183 4.19434 4.21729 4.37646 4.45901 4.46962 4.52259 4.54087 4.58699 4.69525 4.80289 4.82791 4.91709 4.99124 5.02746 5.04550 5.07254 5.15260 5.25539 5.30979 5.41115 5.42493 5.46842 5.50394 5.61069 5.81362 6.07891 6.24267 6.42531 6.46225 6.56574 7.08127 7.28035 7.78315 7.92624 8.63406 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019703 B = 0.003513 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.795798 B = 7969.362469 C = 8980.604747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 N -0.611 5.611 4 C 0.243 3.757 5 C -0.205 4.205 6 C -0.089 4.089 7 C -0.206 4.206 8 C 0.501 3.499 9 O -0.622 6.622 10 N -0.445 5.445 11 C -0.343 4.343 12 H 0.074 0.926 13 C -0.005 4.005 14 N -0.847 5.847 15 Si 0.984 3.016 16 H -0.271 1.271 17 H -0.261 1.261 18 H -0.284 1.284 19 C 0.122 3.878 20 C 0.466 3.534 21 O -0.471 6.471 22 O -0.532 6.532 23 C -0.029 4.029 24 C -0.201 4.201 25 C 0.128 3.872 26 C -0.159 4.159 27 C -0.159 4.159 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.256 0.744 36 H 0.093 0.907 37 H 0.133 0.867 38 H 0.409 0.591 39 H 0.118 0.882 40 H 0.149 0.851 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.081 0.919 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.064 -7.953 20.720 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 N -0.319 5.319 4 C 0.137 3.863 5 C -0.227 4.227 6 C -0.107 4.107 7 C -0.212 4.212 8 C 0.294 3.706 9 O -0.509 6.509 10 N -0.164 5.164 11 C -0.470 4.470 12 H 0.092 0.908 13 C -0.207 4.207 14 N -0.488 5.488 15 Si 0.808 3.192 16 H -0.196 1.196 17 H -0.186 1.186 18 H -0.210 1.210 19 C -0.003 4.003 20 C 0.305 3.695 21 O -0.353 6.353 22 O -0.346 6.346 23 C -0.050 4.050 24 C -0.223 4.223 25 C 0.026 3.974 26 C -0.217 4.217 27 C -0.217 4.217 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.150 0.850 38 H 0.268 0.732 39 H 0.136 0.864 40 H 0.166 0.834 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.065 0.935 46 H 0.100 0.900 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.155 -8.378 20.132 23.281 hybrid contribution 1.192 0.728 -1.167 1.821 sum -6.963 -7.650 18.965 21.603 Atomic orbital electron populations 1.22369 0.95678 1.02791 1.02400 1.21585 0.94611 0.81544 1.03545 1.46815 1.69545 1.13535 1.02050 1.18011 0.90538 0.91005 0.86699 1.20814 1.07839 0.95910 0.98109 1.22516 0.95880 1.00581 0.91733 1.19828 1.10440 0.98415 0.92477 1.18890 0.81152 0.81173 0.89355 1.90522 1.58005 1.67158 1.35248 1.43251 1.53635 1.09650 1.09824 1.19516 1.20099 1.21043 0.86336 0.90788 1.26327 0.93061 0.99850 1.01483 1.71472 1.18897 1.30133 1.28311 0.85041 0.77613 0.78401 0.78170 1.19593 1.18597 1.20965 1.21498 0.92773 0.98521 0.87498 1.22535 0.91003 0.77734 0.78218 1.90614 1.41987 1.41864 1.60797 1.84410 1.41308 1.70693 1.38220 1.20976 0.93180 0.92278 0.98520 1.20713 1.09267 1.02409 0.89952 1.21298 0.96564 0.96814 0.82772 1.22262 0.96346 1.02722 1.00360 1.22143 0.98422 1.01031 1.00056 0.90431 0.91433 0.93763 0.88709 0.90940 0.83448 0.83546 0.93269 0.88895 0.84971 0.73199 0.86409 0.83373 0.89467 0.93363 0.91184 0.90248 0.93499 0.89968 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 9.91 71.98 0.71 -1.54 16 2 C 0.11 1.57 5.26 86.38 0.45 2.02 16 3 N -0.61 -11.60 2.52 -673.33 -1.69 -13.29 16 4 C 0.24 6.54 6.54 38.47 0.25 6.79 16 5 C -0.20 -6.14 9.28 22.36 0.21 -5.93 16 6 C -0.09 -3.39 7.63 22.51 0.17 -3.21 16 7 C -0.21 -9.21 5.74 -20.08 -0.12 -9.33 16 8 C 0.50 27.72 7.46 86.66 0.65 28.37 16 9 O -0.62 -38.51 16.15 -4.14 -0.07 -38.57 16 10 N -0.45 -24.49 2.22 -664.97 -1.47 -25.96 16 11 C -0.34 -20.43 9.09 84.09 0.76 -19.67 16 12 H 0.07 4.71 7.53 -2.91 -0.02 4.69 16 13 C -0.01 -0.29 5.03 84.95 0.43 0.14 16 14 N -0.85 -46.58 7.02 21.68 0.15 -46.42 16 15 Si 0.98 43.90 29.61 68.60 2.03 45.93 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 C 0.12 5.55 4.89 85.63 0.42 5.97 16 20 C 0.47 21.04 3.67 71.24 0.26 21.30 16 21 O -0.47 -25.61 13.88 21.95 0.30 -25.30 16 22 O -0.53 -18.54 13.41 -51.37 -0.69 -19.23 16 23 C -0.03 -1.13 9.58 22.51 0.22 -0.92 16 24 C -0.20 -5.92 9.00 22.36 0.20 -5.72 16 25 C 0.13 1.92 3.19 44.99 0.14 2.07 16 26 C -0.16 -1.87 8.38 71.98 0.60 -1.26 16 27 C -0.16 -1.89 9.09 71.98 0.65 -1.23 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.81 5.42 -2.39 -0.01 0.80 16 30 H 0.04 0.74 7.85 -2.38 -0.02 0.72 16 31 H 0.09 1.00 6.23 -2.39 -0.01 0.98 16 32 H 0.07 1.12 6.46 -2.38 -0.02 1.10 16 33 H 0.15 3.59 5.72 -2.91 -0.02 3.58 16 34 H 0.15 5.79 1.63 -21.78 -0.04 5.76 16 35 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 36 H 0.09 4.12 8.02 -2.39 -0.02 4.10 16 37 H 0.13 5.15 4.89 -2.39 -0.01 5.14 16 38 H 0.41 11.06 9.10 -74.06 -0.67 10.39 16 39 H 0.12 4.68 7.65 -2.91 -0.02 4.66 16 40 H 0.15 3.46 6.07 -2.91 -0.02 3.44 16 41 H 0.09 1.44 5.28 -2.38 -0.01 1.43 16 42 H 0.05 0.70 8.14 -2.38 -0.02 0.69 16 43 H 0.07 0.70 6.03 -2.39 -0.01 0.69 16 44 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 47 H 0.07 0.67 6.54 -2.39 -0.02 0.66 16 Total: -1.00 -79.11 363.31 4.91 -74.19 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.33 Total: 30.81 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 6.02 Total: 17.85 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -3.02 Total: -85.68 kcal Atomic # 8 Polarization: -82.66 SS G_CDS: -0.45 Total: -83.11 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -79.11 4.91 -74.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737109372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.326 kcal (2) G-P(sol) polarization free energy of solvation -79.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds