Wall clock time and date at job start Tue Mar 31 2020 18:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46954 * 2 1 4 4 O 1.45197 * 109.46797 * 119.99094 * 2 1 3 5 5 C 1.34225 * 117.00704 * 269.99995 * 4 2 1 6 6 O 1.20827 * 119.99469 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00565 * 179.97438 * 5 4 2 8 8 C 1.52996 * 109.47160 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47181 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.47405 * 180.02562 * 9 8 7 11 11 C 1.38219 * 119.61933 * 125.02389 * 10 9 8 12 12 C 1.38633 * 119.15973 * 179.74876 * 11 10 9 13 13 C 1.38672 * 118.42106 * 0.46723 * 12 11 10 14 14 C 1.38187 * 119.15873 * 359.50905 * 13 12 11 15 15 N 1.31856 * 119.61377 * 304.99848 * 10 9 8 16 16 C 1.50696 * 109.47224 * 239.99214 * 2 1 3 17 17 O 1.21284 * 120.00011 * 256.02536 * 16 2 1 18 18 N 1.34779 * 119.99614 * 76.03221 * 16 2 1 19 19 C 1.46498 * 120.00350 * 5.35929 * 18 16 2 20 20 C 1.46504 * 119.99546 * 185.36504 * 18 16 2 21 21 C 1.50690 * 109.47296 * 89.99830 * 20 18 16 22 22 H 1.07997 * 120.00392 * 359.97438 * 21 20 18 23 23 C 1.37880 * 120.00084 * 179.97438 * 21 20 18 24 24 N 1.31510 * 119.99836 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99988 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47164 * 90.00230 * 25 23 21 27 27 H 1.48507 * 109.47055 * 209.99786 * 25 23 21 28 28 H 1.48493 * 109.47536 * 329.99873 * 25 23 21 29 29 H 1.08999 * 109.47044 * 186.13917 * 1 2 3 30 30 H 1.09003 * 109.47505 * 306.14198 * 1 2 3 31 31 H 1.09004 * 109.46956 * 66.14464 * 1 2 3 32 32 H 1.09006 * 109.46776 * 60.00910 * 7 5 4 33 33 H 1.08996 * 109.47672 * 300.00616 * 7 5 4 34 34 H 1.09002 * 109.47202 * 60.00668 * 8 7 5 35 35 H 1.09000 * 109.47394 * 300.00345 * 8 7 5 36 36 H 1.09000 * 109.47230 * 59.99942 * 9 8 7 37 37 H 1.09000 * 109.47003 * 300.00296 * 9 8 7 38 38 H 1.08004 * 120.42177 * 359.95337 * 11 10 9 39 39 H 1.07999 * 120.78707 * 180.22999 * 12 11 10 40 40 H 1.07998 * 120.42060 * 179.78177 * 13 12 11 41 41 H 1.08002 * 119.60999 * 180.25056 * 14 13 12 42 42 H 1.09001 * 109.46803 * 84.82542 * 19 18 16 43 43 H 1.08998 * 109.47025 * 204.82367 * 19 18 16 44 44 H 1.08998 * 109.47167 * 324.82642 * 19 18 16 45 45 H 1.09003 * 109.46875 * 209.99654 * 20 18 16 46 46 H 1.08998 * 109.47095 * 329.99488 * 20 18 16 47 47 H 0.97005 * 120.00000 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6843 1.1857 5 6 2.2170 0.0642 2.2812 6 8 1.9973 1.2519 2.2505 7 6 2.7181 -0.5769 3.5496 8 6 2.8634 0.4895 4.6371 9 6 3.3726 -0.1612 5.9247 10 6 3.5152 0.8890 6.9961 11 6 2.8725 0.7202 8.2081 12 6 3.0144 1.6897 9.1888 13 6 3.7931 2.8025 8.9089 14 6 4.4057 2.9024 7.6742 15 7 4.2520 1.9581 6.7665 16 6 2.0323 -0.7106 -1.2303 17 8 2.4736 -1.8368 -1.1425 18 7 1.9913 -0.0943 -2.4283 19 6 1.5691 1.3056 -2.5179 20 6 2.3689 -0.8246 -3.6409 21 6 1.1508 -1.4922 -4.2251 22 1 0.1913 -1.3838 -3.7414 23 6 1.2611 -2.2415 -5.3773 24 7 2.4293 -2.3731 -5.9666 25 14 -0.2488 -3.0695 -6.1010 26 1 -0.9074 -2.1469 -7.0604 27 1 0.1583 -4.3106 -6.8079 28 1 -1.1975 -3.4096 -5.0105 29 1 -0.3633 -1.0218 0.1099 30 1 -0.3634 0.6061 0.8299 31 1 -0.3633 0.4156 -0.9399 32 1 3.6870 -1.0405 3.3642 33 1 2.0086 -1.3365 3.8777 34 1 1.8947 0.9536 4.8227 35 1 3.5731 1.2489 4.3088 36 1 4.3414 -0.6251 5.7389 37 1 2.6632 -0.9208 6.2531 38 1 2.2700 -0.1576 8.3900 39 1 2.5270 1.5827 10.1465 40 1 3.9227 3.5792 9.6481 41 1 5.0170 3.7640 7.4500 42 1 2.4230 1.9556 -2.3269 43 1 1.1776 1.5039 -3.5156 44 1 0.7925 1.4990 -1.7778 45 1 2.7862 -0.1289 -4.3689 46 1 3.1137 -1.5807 -3.3926 47 1 2.5069 -2.8999 -6.7775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741334263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:14 Heat of formation + Delta-G solvation = -94.557202 kcal Electronic energy + Delta-G solvation = -27586.984662 eV Core-core repulsion = 23541.856531 eV Total energy + Delta-G solvation = -4045.128131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.72779 -40.49408 -38.93549 -36.58536 -35.30239 -34.86407 -32.85753 -32.76634 -32.04729 -31.37314 -28.10518 -27.75287 -26.05086 -24.69666 -24.02135 -23.60095 -22.42700 -21.48605 -20.42446 -18.78517 -17.88350 -17.22019 -16.72512 -16.66231 -16.51456 -16.30448 -15.93376 -15.62386 -15.11507 -14.94027 -14.59999 -14.42017 -14.19676 -13.77672 -13.55168 -13.47401 -13.06879 -12.81771 -12.57390 -12.36267 -12.33376 -12.09428 -12.05843 -11.98247 -11.71190 -11.63170 -11.36639 -11.22804 -11.04729 -10.92589 -10.67266 -10.56286 -10.45854 -10.25521 -10.17817 -9.75787 -9.65916 -9.34370 -8.89102 -8.45656 -7.70972 -6.06417 -4.11762 0.71510 0.89492 2.22254 2.54185 3.25599 3.29181 3.36081 3.40660 3.41619 3.88424 3.93373 4.24738 4.42237 4.45452 4.58913 4.65460 4.72028 4.75334 4.83600 4.88041 5.03390 5.12020 5.13385 5.17344 5.25042 5.28178 5.33905 5.36847 5.47338 5.55423 5.68528 5.71510 5.76639 5.78459 5.88144 5.90516 6.07169 6.10020 6.25677 6.32285 6.51074 7.00060 7.40702 7.47663 7.64488 7.78134 7.89814 8.19604 8.30648 8.84327 8.99620 9.53318 11.01633 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032643 B = 0.001740 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.569371 B =16088.644432 C =16239.791587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.070 3.930 3 H 0.102 0.898 4 O -0.328 6.328 5 C 0.459 3.541 6 O -0.512 6.512 7 C -0.114 4.114 8 C -0.099 4.099 9 C -0.071 4.071 10 C 0.134 3.866 11 C -0.172 4.172 12 C -0.074 4.074 13 C -0.182 4.182 14 C 0.104 3.896 15 N -0.479 5.479 16 C 0.510 3.490 17 O -0.521 6.521 18 N -0.597 5.597 19 C 0.074 3.926 20 C 0.245 3.755 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.156 0.844 42 H 0.047 0.953 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 9.755 28.882 30.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 H 0.120 0.880 4 O -0.243 6.243 5 C 0.302 3.698 6 O -0.400 6.400 7 C -0.151 4.151 8 C -0.137 4.137 9 C -0.109 4.109 10 C -0.004 4.004 11 C -0.192 4.192 12 C -0.100 4.100 13 C -0.202 4.202 14 C -0.054 4.054 15 N -0.189 5.189 16 C 0.294 3.706 17 O -0.397 6.397 18 N -0.330 5.330 19 C -0.070 4.070 20 C 0.127 3.873 21 C -0.569 4.569 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.173 0.827 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.744 9.494 27.886 29.468 hybrid contribution -1.337 -0.257 0.326 1.400 sum -0.593 9.237 28.212 29.692 Atomic orbital electron populations 1.22152 0.92198 1.04058 1.03720 1.22645 0.95990 0.97365 0.82844 0.88037 1.86635 1.76395 1.41585 1.19664 1.23816 0.74232 0.85992 0.85726 1.90645 1.48300 1.16714 1.84386 1.21415 1.04276 0.99939 0.89496 1.21326 1.03135 0.97383 0.91894 1.20580 1.02940 0.94876 0.92486 1.21262 0.92054 0.93326 0.93726 1.22022 1.01829 1.00829 0.94471 1.21602 0.96075 0.93180 0.99180 1.22156 0.99662 0.99383 0.98990 1.22797 0.96434 0.96808 0.89324 1.67498 1.15981 1.01603 1.33770 1.19782 0.80156 0.86829 0.83811 1.90691 1.45183 1.18437 1.85356 1.48078 1.65319 1.11904 1.07732 1.21829 0.99003 0.82677 1.03501 1.19365 0.96688 0.92077 0.79203 1.21430 0.94805 1.31478 1.09159 0.92353 1.24941 0.96265 0.96130 0.96747 1.69933 1.23172 1.40485 1.19591 0.86478 0.82760 0.79000 0.79070 1.20616 1.21050 1.19880 0.90681 0.91333 0.89547 0.87271 0.87510 0.91129 0.89682 0.89391 0.89888 0.84714 0.84882 0.84865 0.82706 0.93429 0.90091 0.92263 0.94640 0.93557 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.19 37.16 0.34 -2.06 16 2 C 0.07 1.21 2.14 -27.89 -0.06 1.15 16 3 H 0.10 1.62 6.31 -51.93 -0.33 1.29 16 4 O -0.33 -5.53 9.47 -45.73 -0.43 -5.96 16 5 C 0.46 6.46 7.93 36.01 0.29 6.74 16 6 O -0.51 -8.14 15.20 -18.75 -0.29 -8.43 16 7 C -0.11 -1.07 5.81 -27.89 -0.16 -1.23 16 8 C -0.10 -0.91 4.36 -26.73 -0.12 -1.03 16 9 C -0.07 -0.50 5.61 -27.88 -0.16 -0.66 16 10 C 0.13 1.15 6.18 -82.59 -0.51 0.64 16 11 C -0.17 -1.16 9.71 -39.44 -0.38 -1.55 16 12 C -0.07 -0.44 10.18 -39.28 -0.40 -0.84 16 13 C -0.18 -1.12 10.11 -39.44 -0.40 -1.52 16 14 C 0.10 0.81 11.18 -17.55 -0.20 0.62 16 15 N -0.48 -4.83 9.88 -9.47 -0.09 -4.92 16 16 C 0.51 11.16 6.95 -10.99 -0.08 11.08 16 17 O -0.52 -13.68 16.13 -13.54 -0.22 -13.90 16 18 N -0.60 -12.91 2.86 -182.96 -0.52 -13.44 16 19 C 0.07 1.19 9.79 59.85 0.59 1.78 16 20 C 0.25 6.46 5.18 -5.20 -0.03 6.43 16 21 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 22 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 25 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.21 6.33 -51.93 -0.33 0.88 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.08 0.96 7.90 -51.93 -0.41 0.55 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.40 7.87 -51.93 -0.41 -0.01 16 38 H 0.13 0.60 7.95 -52.48 -0.42 0.19 16 39 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 44 H 0.06 0.81 4.92 -51.93 -0.26 0.55 16 45 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 46 H 0.05 1.37 7.35 -51.93 -0.38 0.99 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 398.84 15.07 6.01 6.01 Total: -1.00 -36.54 398.84 -8.66 -45.19 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.14 Total: -1.45 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.69 Total: 5.92 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.12 Total: -44.10 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.94 Total: -28.29 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.54 -8.66 -45.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741334263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.364 kcal (2) G-P(sol) polarization free energy of solvation -36.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds