Wall clock time and date at job start Tue Mar 31 2020 18:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46954 * 2 1 4 4 O 1.45197 * 109.46797 * 119.99094 * 2 1 3 5 5 C 1.34225 * 117.00704 * 269.99995 * 4 2 1 6 6 O 1.20827 * 119.99469 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00565 * 179.97438 * 5 4 2 8 8 C 1.52996 * 109.47160 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47181 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.47405 * 180.02562 * 9 8 7 11 11 C 1.38219 * 119.61933 * 125.02389 * 10 9 8 12 12 C 1.38633 * 119.15973 * 179.74876 * 11 10 9 13 13 C 1.38672 * 118.42106 * 0.46723 * 12 11 10 14 14 C 1.38187 * 119.15873 * 359.50905 * 13 12 11 15 15 N 1.31856 * 119.61377 * 304.99848 * 10 9 8 16 16 C 1.50696 * 109.47224 * 239.99214 * 2 1 3 17 17 O 1.21284 * 120.00011 * 256.02536 * 16 2 1 18 18 N 1.34779 * 119.99614 * 76.03221 * 16 2 1 19 19 C 1.46498 * 120.00350 * 5.35929 * 18 16 2 20 20 C 1.46504 * 119.99546 * 185.36504 * 18 16 2 21 21 C 1.50690 * 109.47296 * 89.99830 * 20 18 16 22 22 H 1.07997 * 120.00392 * 359.97438 * 21 20 18 23 23 C 1.37880 * 120.00084 * 179.97438 * 21 20 18 24 24 N 1.31510 * 119.99836 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99988 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47164 * 90.00230 * 25 23 21 27 27 H 1.48507 * 109.47055 * 209.99786 * 25 23 21 28 28 H 1.48493 * 109.47536 * 329.99873 * 25 23 21 29 29 H 1.08999 * 109.47044 * 186.13917 * 1 2 3 30 30 H 1.09003 * 109.47505 * 306.14198 * 1 2 3 31 31 H 1.09004 * 109.46956 * 66.14464 * 1 2 3 32 32 H 1.09006 * 109.46776 * 60.00910 * 7 5 4 33 33 H 1.08996 * 109.47672 * 300.00616 * 7 5 4 34 34 H 1.09002 * 109.47202 * 60.00668 * 8 7 5 35 35 H 1.09000 * 109.47394 * 300.00345 * 8 7 5 36 36 H 1.09000 * 109.47230 * 59.99942 * 9 8 7 37 37 H 1.09000 * 109.47003 * 300.00296 * 9 8 7 38 38 H 1.08004 * 120.42177 * 359.95337 * 11 10 9 39 39 H 1.07999 * 120.78707 * 180.22999 * 12 11 10 40 40 H 1.07998 * 120.42060 * 179.78177 * 13 12 11 41 41 H 1.08002 * 119.60999 * 180.25056 * 14 13 12 42 42 H 1.09001 * 109.46803 * 84.82542 * 19 18 16 43 43 H 1.08998 * 109.47025 * 204.82367 * 19 18 16 44 44 H 1.08998 * 109.47167 * 324.82642 * 19 18 16 45 45 H 1.09003 * 109.46875 * 209.99654 * 20 18 16 46 46 H 1.08998 * 109.47095 * 329.99488 * 20 18 16 47 47 H 0.97005 * 120.00000 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6843 1.1857 5 6 2.2170 0.0642 2.2812 6 8 1.9973 1.2519 2.2505 7 6 2.7181 -0.5769 3.5496 8 6 2.8634 0.4895 4.6371 9 6 3.3726 -0.1612 5.9247 10 6 3.5152 0.8890 6.9961 11 6 2.8725 0.7202 8.2081 12 6 3.0144 1.6897 9.1888 13 6 3.7931 2.8025 8.9089 14 6 4.4057 2.9024 7.6742 15 7 4.2520 1.9581 6.7665 16 6 2.0323 -0.7106 -1.2303 17 8 2.4736 -1.8368 -1.1425 18 7 1.9913 -0.0943 -2.4283 19 6 1.5691 1.3056 -2.5179 20 6 2.3689 -0.8246 -3.6409 21 6 1.1508 -1.4922 -4.2251 22 1 0.1913 -1.3838 -3.7414 23 6 1.2611 -2.2415 -5.3773 24 7 2.4293 -2.3731 -5.9666 25 14 -0.2488 -3.0695 -6.1010 26 1 -0.9074 -2.1469 -7.0604 27 1 0.1583 -4.3106 -6.8079 28 1 -1.1975 -3.4096 -5.0105 29 1 -0.3633 -1.0218 0.1099 30 1 -0.3634 0.6061 0.8299 31 1 -0.3633 0.4156 -0.9399 32 1 3.6870 -1.0405 3.3642 33 1 2.0086 -1.3365 3.8777 34 1 1.8947 0.9536 4.8227 35 1 3.5731 1.2489 4.3088 36 1 4.3414 -0.6251 5.7389 37 1 2.6632 -0.9208 6.2531 38 1 2.2700 -0.1576 8.3900 39 1 2.5270 1.5827 10.1465 40 1 3.9227 3.5792 9.6481 41 1 5.0170 3.7640 7.4500 42 1 2.4230 1.9556 -2.3269 43 1 1.1776 1.5039 -3.5156 44 1 0.7925 1.4990 -1.7778 45 1 2.7862 -0.1289 -4.3689 46 1 3.1137 -1.5807 -3.3926 47 1 2.5069 -2.8999 -6.7775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741334263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:14 Heat of formation + Delta-G solvation = -116.394907 kcal Electronic energy + Delta-G solvation = -27587.931616 eV Core-core repulsion = 23541.856531 eV Total energy + Delta-G solvation = -4046.075085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.92913 -41.07129 -40.53972 -37.81990 -36.69805 -36.02384 -34.86172 -33.33429 -33.14122 -32.32391 -29.73169 -28.73466 -27.59022 -26.10277 -25.04348 -24.39116 -23.74645 -22.23980 -21.43797 -20.40033 -19.03018 -18.69800 -18.15643 -17.70923 -17.57931 -17.33833 -17.07588 -16.72640 -16.35395 -16.26980 -15.87706 -15.68563 -15.12143 -14.75423 -14.64137 -14.36794 -14.21641 -14.02878 -13.85798 -13.67539 -13.56170 -13.36978 -13.15109 -13.10488 -12.95258 -12.82689 -12.69752 -12.56404 -12.51098 -12.24562 -12.21387 -11.94568 -11.73191 -11.70643 -11.60436 -10.76174 -10.64658 -10.63711 -10.29229 -9.84497 -9.53713 -8.23328 -6.38467 0.21790 0.41646 1.10993 1.33551 1.37836 1.40946 1.50541 1.59488 2.32993 2.44404 2.89852 3.06767 3.39174 3.41296 3.56438 3.72136 3.78494 3.83340 4.03348 4.09043 4.17424 4.25665 4.27742 4.30183 4.41541 4.56002 4.57887 4.61467 4.62325 4.67002 4.74004 4.84166 4.86998 4.93178 4.96423 5.06223 5.13331 5.19343 5.30325 5.32457 5.35660 5.41672 5.51222 5.77487 5.86199 6.02538 6.52690 6.67816 6.70339 7.12544 7.18375 7.35026 8.84254 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032643 B = 0.001740 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.569371 B =16088.644432 C =16239.791587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.079 3.921 3 H 0.117 0.883 4 O -0.346 6.346 5 C 0.457 3.543 6 O -0.533 6.533 7 C -0.107 4.107 8 C -0.089 4.089 9 C -0.066 4.066 10 C 0.109 3.891 11 C -0.175 4.175 12 C -0.079 4.079 13 C -0.181 4.181 14 C 0.080 3.920 15 N -0.518 5.518 16 C 0.501 3.499 17 O -0.577 6.577 18 N -0.601 5.601 19 C 0.067 3.933 20 C 0.258 3.742 21 C -0.546 4.546 22 H 0.058 0.942 23 C 0.008 3.992 24 N -0.928 5.928 25 Si 0.971 3.029 26 H -0.263 1.263 27 H -0.282 1.282 28 H -0.271 1.271 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.137 0.863 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.030 0.970 46 H 0.000 1.000 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 10.216 30.910 32.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 H 0.134 0.866 4 O -0.262 6.262 5 C 0.302 3.698 6 O -0.422 6.422 7 C -0.144 4.144 8 C -0.127 4.127 9 C -0.104 4.104 10 C -0.028 4.028 11 C -0.195 4.195 12 C -0.105 4.105 13 C -0.201 4.201 14 C -0.076 4.076 15 N -0.228 5.228 16 C 0.288 3.712 17 O -0.457 6.457 18 N -0.333 5.333 19 C -0.074 4.074 20 C 0.137 3.863 21 C -0.584 4.584 22 H 0.077 0.923 23 C -0.192 4.192 24 N -0.567 5.567 25 Si 0.795 3.205 26 H -0.188 1.188 27 H -0.207 1.207 28 H -0.196 1.196 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.141 0.859 33 H 0.155 0.845 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.176 0.824 39 H 0.179 0.821 40 H 0.176 0.824 41 H 0.183 0.817 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.048 0.952 46 H 0.019 0.981 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.318 10.016 29.931 31.590 hybrid contribution -0.626 -0.327 -0.233 0.744 sum -1.944 9.689 29.698 31.299 Atomic orbital electron populations 1.22149 0.89973 1.04155 1.05175 1.22496 0.97397 0.96865 0.81128 0.86558 1.86656 1.76860 1.42530 1.20142 1.24722 0.73369 0.85853 0.85903 1.90630 1.49318 1.17652 1.84604 1.21591 1.05463 1.00323 0.87023 1.21188 1.01885 0.96765 0.92846 1.20596 1.03725 0.94994 0.91044 1.21558 0.92786 0.93490 0.94996 1.22332 1.01433 1.01809 0.93883 1.22025 0.95676 0.92667 1.00153 1.22466 0.98783 1.00113 0.98703 1.23131 0.97354 0.97070 0.90068 1.67454 1.17329 1.02789 1.35216 1.20659 0.79023 0.86409 0.85115 1.90650 1.47633 1.21060 1.86378 1.48071 1.64942 1.13770 1.06512 1.22138 1.00940 0.79661 1.04698 1.18873 0.95276 0.91288 0.80830 1.21701 0.95149 1.32041 1.09546 0.92327 1.25886 0.99503 0.96629 0.97146 1.70057 1.25396 1.41165 1.20085 0.85369 0.78739 0.78042 0.78378 1.18777 1.20741 1.19570 0.91549 0.88863 0.88751 0.85937 0.84524 0.92063 0.92443 0.89180 0.87089 0.82368 0.82103 0.82394 0.81677 0.91090 0.90032 0.89150 0.95248 0.98148 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 9.19 71.98 0.66 -3.66 16 2 C 0.08 2.67 2.14 29.85 0.06 2.73 16 3 H 0.12 3.54 6.31 -2.39 -0.02 3.52 16 4 O -0.35 -11.49 9.47 -45.16 -0.43 -11.91 16 5 C 0.46 12.40 7.93 71.24 0.56 12.96 16 6 O -0.53 -16.46 15.20 21.96 0.33 -16.13 16 7 C -0.11 -1.85 5.81 29.85 0.17 -1.67 16 8 C -0.09 -1.56 4.36 30.59 0.13 -1.43 16 9 C -0.07 -0.84 5.61 29.85 0.17 -0.67 16 10 C 0.11 1.78 6.18 42.55 0.26 2.04 16 11 C -0.18 -2.02 9.71 22.36 0.22 -1.80 16 12 C -0.08 -0.77 10.18 22.47 0.23 -0.54 16 13 C -0.18 -1.94 10.11 22.36 0.23 -1.72 16 14 C 0.08 1.25 11.18 84.67 0.95 2.19 16 15 N -0.52 -10.53 9.88 -183.89 -1.82 -12.35 16 16 C 0.50 22.30 6.95 87.66 0.61 22.91 16 17 O -0.58 -31.62 16.13 15.22 0.25 -31.38 16 18 N -0.60 -26.31 2.86 -851.15 -2.43 -28.74 16 19 C 0.07 2.09 9.79 127.77 1.25 3.34 16 20 C 0.26 14.10 5.18 85.63 0.44 14.54 16 21 C -0.55 -31.33 9.39 25.60 0.24 -31.09 16 22 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 23 C 0.01 0.43 5.46 84.66 0.46 0.90 16 24 N -0.93 -56.09 13.29 21.45 0.28 -55.80 16 25 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 28 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.09 2.42 6.33 -2.38 -0.02 2.40 16 32 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.06 1.32 7.90 -2.39 -0.02 1.31 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 0.75 7.87 -2.39 -0.02 0.73 16 38 H 0.16 0.94 7.95 -2.91 -0.02 0.92 16 39 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 40 H 0.16 0.78 8.06 -2.91 -0.02 0.75 16 41 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.08 2.53 8.03 -2.39 -0.02 2.51 16 44 H 0.09 2.23 4.92 -2.39 -0.01 2.22 16 45 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 46 H 0.00 0.02 7.35 -2.39 -0.02 0.01 16 47 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 Total: -1.00 -83.13 398.84 5.83 -77.30 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.96 Total: 13.38 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 6.65 Total: 19.04 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -3.96 Total: -96.89 kcal Atomic # 8 Polarization: -59.57 SS G_CDS: 0.15 Total: -59.42 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -83.13 5.83 -77.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741334263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.098 kcal (2) G-P(sol) polarization free energy of solvation -83.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds