Wall clock time and date at job start Tue Mar 31 2020 18:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47241 * 2 1 4 4 O 1.45199 * 109.47313 * 239.99415 * 2 1 3 5 5 C 1.34229 * 116.99656 * 90.00194 * 4 2 1 6 6 O 1.20823 * 120.00383 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99536 * 179.97438 * 5 4 2 8 8 C 1.53007 * 109.46688 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46710 * 180.02562 * 8 7 5 10 10 C 1.50707 * 109.46899 * 180.02562 * 9 8 7 11 11 C 1.38227 * 119.62059 * 125.01804 * 10 9 8 12 12 C 1.38627 * 119.15702 * 179.74122 * 11 10 9 13 13 C 1.38669 * 118.42389 * 0.47826 * 12 11 10 14 14 C 1.38186 * 119.16143 * 359.49762 * 13 12 11 15 15 N 1.31856 * 119.61137 * 304.99234 * 10 9 8 16 16 C 1.50700 * 109.46742 * 119.99312 * 2 1 3 17 17 O 1.21287 * 119.99729 * 120.00405 * 16 2 1 18 18 N 1.34772 * 120.00379 * 300.00227 * 16 2 1 19 19 C 1.46499 * 119.99695 * 359.97438 * 18 16 2 20 20 C 1.46501 * 120.00175 * 180.02562 * 18 16 2 21 21 C 1.50701 * 109.47252 * 89.99589 * 20 18 16 22 22 H 1.07996 * 120.00041 * 0.02562 * 21 20 18 23 23 C 1.37883 * 119.99843 * 180.02562 * 21 20 18 24 24 N 1.31512 * 120.00031 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99868 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47418 * 119.99845 * 25 23 21 28 28 H 1.48499 * 109.46806 * 240.00319 * 25 23 21 29 29 H 1.09001 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47427 * 300.00842 * 1 2 3 31 31 H 1.09001 * 109.46677 * 60.00299 * 1 2 3 32 32 H 1.08995 * 109.47407 * 60.00291 * 7 5 4 33 33 H 1.08999 * 109.47431 * 299.99766 * 7 5 4 34 34 H 1.08995 * 109.47122 * 59.99918 * 8 7 5 35 35 H 1.09000 * 109.46817 * 299.99379 * 8 7 5 36 36 H 1.08995 * 109.47755 * 59.99865 * 9 8 7 37 37 H 1.08999 * 109.47059 * 299.99354 * 9 8 7 38 38 H 1.07998 * 120.41916 * 359.95342 * 11 10 9 39 39 H 1.08008 * 120.78688 * 180.22921 * 12 11 10 40 40 H 1.08002 * 120.42244 * 179.78279 * 13 12 11 41 41 H 1.07996 * 119.61757 * 180.25243 * 14 13 12 42 42 H 1.09002 * 109.46858 * 90.00497 * 19 18 16 43 43 H 1.08999 * 109.47096 * 210.00059 * 19 18 16 44 44 H 1.08999 * 109.47359 * 329.99999 * 19 18 16 45 45 H 1.09002 * 109.46924 * 209.99706 * 20 18 16 46 46 H 1.09005 * 109.46972 * 329.99461 * 20 18 16 47 47 H 0.96997 * 119.99706 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2172 0.0639 -2.2810 6 8 1.9983 1.2517 -2.2504 7 6 2.7195 -0.5773 -3.5490 8 6 2.8646 0.4889 -4.6368 9 6 3.3739 -0.1622 -5.9243 10 6 3.5175 0.8881 -6.9955 11 6 4.7306 1.0464 -7.6388 12 6 4.8504 2.0118 -8.6265 13 6 3.7435 2.7921 -8.9245 14 6 2.5631 2.5760 -8.2393 15 7 2.4841 1.6450 -7.3085 16 6 2.0322 -0.7103 1.2306 17 8 2.7296 -1.6964 1.1194 18 7 1.7066 -0.2498 2.4546 19 6 0.8648 0.9417 2.5888 20 6 2.1953 -0.9400 3.6509 21 6 3.5227 -0.3559 4.0607 22 1 3.9585 0.4491 3.4878 23 6 4.1808 -0.8494 5.1673 24 7 3.6504 -1.8301 5.8647 25 14 5.8258 -0.1250 5.6758 26 1 6.2022 0.9586 4.7328 27 1 5.7196 0.4285 7.0496 28 1 6.8638 -1.1867 5.6487 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8900 32 1 2.0107 -1.3375 -3.8772 33 1 3.6886 -1.0402 -3.3630 34 1 3.5736 1.2488 -4.3083 35 1 1.8957 0.9521 -4.8230 36 1 2.6646 -0.9219 -6.2525 37 1 4.3427 -0.6257 -5.7384 38 1 5.5734 0.4236 -7.3777 39 1 5.7849 2.1555 -9.1486 40 1 3.8019 3.5560 -9.6857 41 1 1.6954 3.1767 -8.4684 42 1 -0.1833 0.6441 2.6220 43 1 1.1226 1.4670 3.5085 44 1 1.0288 1.6004 1.7360 45 1 1.4774 -0.8146 4.4614 46 1 2.3168 -2.0013 3.4339 47 1 4.1136 -2.1775 6.6430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741334270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:17 Heat of formation + Delta-G solvation = -90.748442 kcal Electronic energy + Delta-G solvation = -27638.647986 eV Core-core repulsion = 23593.685015 eV Total energy + Delta-G solvation = -4044.962971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71576 -40.48089 -38.96540 -36.56445 -35.28237 -34.93310 -32.93283 -32.75762 -32.01164 -31.34582 -28.11827 -27.61042 -26.22550 -24.63747 -24.00327 -23.58716 -22.42477 -21.47681 -20.42275 -18.84595 -17.88335 -17.19596 -16.77409 -16.56634 -16.51822 -16.29121 -15.89437 -15.61446 -15.17518 -15.02328 -14.57860 -14.34200 -14.13384 -13.75778 -13.63036 -13.40232 -13.14625 -12.86026 -12.55346 -12.43892 -12.33949 -12.18896 -12.06474 -11.93599 -11.65297 -11.55734 -11.34857 -11.14710 -11.02522 -10.89728 -10.66403 -10.57195 -10.44236 -10.23613 -10.17570 -9.74900 -9.63635 -9.32584 -8.89100 -8.45745 -7.72268 -6.06498 -4.11294 0.73228 0.91236 2.24687 2.55755 3.27710 3.29199 3.36959 3.41748 3.43045 3.88547 3.93668 4.26815 4.43123 4.47040 4.59628 4.68247 4.73896 4.77398 4.82611 4.88548 5.00938 5.10768 5.13834 5.19409 5.25877 5.28214 5.35135 5.39034 5.48145 5.55787 5.68544 5.69877 5.70999 5.80099 5.85505 5.92638 6.01962 6.09057 6.23287 6.33960 6.52481 6.98820 7.39069 7.46903 7.65442 7.80094 7.90032 8.19785 8.29847 8.84982 8.99957 9.53788 11.01636 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.001934 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.782020 B =14474.224260 C =15306.459632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.070 3.930 3 H 0.105 0.895 4 O -0.327 6.327 5 C 0.460 3.540 6 O -0.512 6.512 7 C -0.113 4.113 8 C -0.100 4.100 9 C -0.071 4.071 10 C 0.134 3.866 11 C -0.171 4.171 12 C -0.074 4.074 13 C -0.182 4.182 14 C 0.103 3.897 15 N -0.480 5.480 16 C 0.509 3.491 17 O -0.521 6.521 18 N -0.596 5.596 19 C 0.076 3.924 20 C 0.246 3.754 21 C -0.528 4.528 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.155 0.845 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 7.220 -27.582 28.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 H 0.123 0.877 4 O -0.242 6.242 5 C 0.303 3.697 6 O -0.400 6.400 7 C -0.151 4.151 8 C -0.138 4.138 9 C -0.109 4.109 10 C -0.004 4.004 11 C -0.191 4.191 12 C -0.100 4.100 13 C -0.202 4.202 14 C -0.054 4.054 15 N -0.189 5.189 16 C 0.293 3.707 17 O -0.396 6.396 18 N -0.330 5.330 19 C -0.068 4.068 20 C 0.127 3.873 21 C -0.567 4.567 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.173 0.827 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.183 6.791 -26.967 28.122 hybrid contribution 1.728 0.813 -0.069 1.911 sum -2.454 7.604 -27.036 28.192 Atomic orbital electron populations 1.22391 0.92511 1.04030 1.04258 1.22587 0.95648 0.97624 0.83016 0.87734 1.86615 1.76459 1.41545 1.19580 1.23802 0.74221 0.85998 0.85665 1.90647 1.48310 1.16705 1.84356 1.21413 1.04239 0.99984 0.89459 1.21329 1.03826 0.96979 0.91625 1.20578 1.02946 0.95300 0.92032 1.21264 0.89046 0.94834 0.95237 1.22034 0.98892 1.00151 0.98005 1.21606 0.98847 0.93855 0.95700 1.22151 0.94495 1.01414 1.02124 1.22785 0.97332 0.94167 0.91154 1.67492 1.31581 1.05204 1.14623 1.19798 0.81669 0.85384 0.83857 1.90701 1.36974 1.26036 1.85905 1.48057 1.49854 1.28350 1.06691 1.21883 0.93952 0.88044 1.02912 1.19358 0.94368 0.93782 0.79749 1.21469 1.04829 1.19115 1.11272 0.92372 1.24940 0.98004 0.94946 0.96229 1.69940 1.38950 1.25996 1.18373 0.86426 0.83657 0.79070 0.78184 1.19807 1.20927 1.20825 0.91039 0.88952 0.91375 0.87417 0.87359 0.91063 0.89736 0.89460 0.89827 0.84669 0.84865 0.84878 0.82738 0.93016 0.90338 0.92282 0.94589 0.93617 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 9.18 37.16 0.34 -2.00 16 2 C 0.07 1.19 2.18 -27.88 -0.06 1.13 16 3 H 0.11 1.75 6.41 -51.93 -0.33 1.41 16 4 O -0.33 -5.56 9.42 -45.90 -0.43 -5.99 16 5 C 0.46 6.65 7.93 36.01 0.29 6.94 16 6 O -0.51 -8.39 15.20 -18.75 -0.28 -8.68 16 7 C -0.11 -1.11 5.81 -27.88 -0.16 -1.27 16 8 C -0.10 -0.95 4.36 -26.73 -0.12 -1.07 16 9 C -0.07 -0.52 5.61 -27.88 -0.16 -0.68 16 10 C 0.13 1.19 6.18 -82.58 -0.51 0.68 16 11 C -0.17 -1.24 9.71 -39.44 -0.38 -1.62 16 12 C -0.07 -0.47 10.18 -39.28 -0.40 -0.87 16 13 C -0.18 -1.16 10.11 -39.44 -0.40 -1.56 16 14 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 15 N -0.48 -4.87 9.88 -9.47 -0.09 -4.96 16 16 C 0.51 11.09 7.15 -10.99 -0.08 11.01 16 17 O -0.52 -13.69 16.08 -14.11 -0.23 -13.91 16 18 N -0.60 -12.77 2.86 -182.95 -0.52 -13.30 16 19 C 0.08 1.20 8.80 59.85 0.53 1.72 16 20 C 0.25 6.45 5.16 -5.19 -0.03 6.42 16 21 C -0.53 -15.07 9.39 -34.44 -0.32 -15.39 16 22 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 25 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.09 4.53 -51.93 -0.24 0.86 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 38 H 0.14 0.69 7.95 -52.49 -0.42 0.27 16 39 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 40 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.05 0.68 6.95 -51.93 -0.36 0.31 16 43 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 44 H 0.06 0.80 6.01 -51.93 -0.31 0.48 16 45 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 46 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -36.88 396.28 -8.68 -45.56 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.05 Total: -1.57 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -1.76 Total: 5.71 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.12 Total: -44.05 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.94 Total: -28.59 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.88 -8.68 -45.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741334270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.189 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds