Wall clock time and date at job start Tue Mar 31 2020 18:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47241 * 2 1 4 4 O 1.45199 * 109.47313 * 239.99415 * 2 1 3 5 5 C 1.34229 * 116.99656 * 90.00194 * 4 2 1 6 6 O 1.20823 * 120.00383 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99536 * 179.97438 * 5 4 2 8 8 C 1.53007 * 109.46688 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46710 * 180.02562 * 8 7 5 10 10 C 1.50707 * 109.46899 * 180.02562 * 9 8 7 11 11 C 1.38227 * 119.62059 * 125.01804 * 10 9 8 12 12 C 1.38627 * 119.15702 * 179.74122 * 11 10 9 13 13 C 1.38669 * 118.42389 * 0.47826 * 12 11 10 14 14 C 1.38186 * 119.16143 * 359.49762 * 13 12 11 15 15 N 1.31856 * 119.61137 * 304.99234 * 10 9 8 16 16 C 1.50700 * 109.46742 * 119.99312 * 2 1 3 17 17 O 1.21287 * 119.99729 * 120.00405 * 16 2 1 18 18 N 1.34772 * 120.00379 * 300.00227 * 16 2 1 19 19 C 1.46499 * 119.99695 * 359.97438 * 18 16 2 20 20 C 1.46501 * 120.00175 * 180.02562 * 18 16 2 21 21 C 1.50701 * 109.47252 * 89.99589 * 20 18 16 22 22 H 1.07996 * 120.00041 * 0.02562 * 21 20 18 23 23 C 1.37883 * 119.99843 * 180.02562 * 21 20 18 24 24 N 1.31512 * 120.00031 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99868 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47418 * 119.99845 * 25 23 21 28 28 H 1.48499 * 109.46806 * 240.00319 * 25 23 21 29 29 H 1.09001 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47427 * 300.00842 * 1 2 3 31 31 H 1.09001 * 109.46677 * 60.00299 * 1 2 3 32 32 H 1.08995 * 109.47407 * 60.00291 * 7 5 4 33 33 H 1.08999 * 109.47431 * 299.99766 * 7 5 4 34 34 H 1.08995 * 109.47122 * 59.99918 * 8 7 5 35 35 H 1.09000 * 109.46817 * 299.99379 * 8 7 5 36 36 H 1.08995 * 109.47755 * 59.99865 * 9 8 7 37 37 H 1.08999 * 109.47059 * 299.99354 * 9 8 7 38 38 H 1.07998 * 120.41916 * 359.95342 * 11 10 9 39 39 H 1.08008 * 120.78688 * 180.22921 * 12 11 10 40 40 H 1.08002 * 120.42244 * 179.78279 * 13 12 11 41 41 H 1.07996 * 119.61757 * 180.25243 * 14 13 12 42 42 H 1.09002 * 109.46858 * 90.00497 * 19 18 16 43 43 H 1.08999 * 109.47096 * 210.00059 * 19 18 16 44 44 H 1.08999 * 109.47359 * 329.99999 * 19 18 16 45 45 H 1.09002 * 109.46924 * 209.99706 * 20 18 16 46 46 H 1.09005 * 109.46972 * 329.99461 * 20 18 16 47 47 H 0.96997 * 119.99706 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2172 0.0639 -2.2810 6 8 1.9983 1.2517 -2.2504 7 6 2.7195 -0.5773 -3.5490 8 6 2.8646 0.4889 -4.6368 9 6 3.3739 -0.1622 -5.9243 10 6 3.5175 0.8881 -6.9955 11 6 4.7306 1.0464 -7.6388 12 6 4.8504 2.0118 -8.6265 13 6 3.7435 2.7921 -8.9245 14 6 2.5631 2.5760 -8.2393 15 7 2.4841 1.6450 -7.3085 16 6 2.0322 -0.7103 1.2306 17 8 2.7296 -1.6964 1.1194 18 7 1.7066 -0.2498 2.4546 19 6 0.8648 0.9417 2.5888 20 6 2.1953 -0.9400 3.6509 21 6 3.5227 -0.3559 4.0607 22 1 3.9585 0.4491 3.4878 23 6 4.1808 -0.8494 5.1673 24 7 3.6504 -1.8301 5.8647 25 14 5.8258 -0.1250 5.6758 26 1 6.2022 0.9586 4.7328 27 1 5.7196 0.4285 7.0496 28 1 6.8638 -1.1867 5.6487 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8900 32 1 2.0107 -1.3375 -3.8772 33 1 3.6886 -1.0402 -3.3630 34 1 3.5736 1.2488 -4.3083 35 1 1.8957 0.9521 -4.8230 36 1 2.6646 -0.9219 -6.2525 37 1 4.3427 -0.6257 -5.7384 38 1 5.5734 0.4236 -7.3777 39 1 5.7849 2.1555 -9.1486 40 1 3.8019 3.5560 -9.6857 41 1 1.6954 3.1767 -8.4684 42 1 -0.1833 0.6441 2.6220 43 1 1.1226 1.4670 3.5085 44 1 1.0288 1.6004 1.7360 45 1 1.4774 -0.8146 4.4614 46 1 2.3168 -2.0013 3.4339 47 1 4.1136 -2.1775 6.6430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741334270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:16 Heat of formation + Delta-G solvation = -113.009971 kcal Electronic energy + Delta-G solvation = -27639.613318 eV Core-core repulsion = 23593.685015 eV Total energy + Delta-G solvation = -4045.928303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.93729 -41.07750 -40.55560 -37.81252 -36.74055 -36.03395 -34.93641 -33.33268 -33.12575 -32.33453 -29.61539 -28.72212 -27.73479 -26.02213 -25.04625 -24.39541 -23.74544 -22.25264 -21.45511 -20.45745 -19.06660 -18.68263 -18.13235 -17.74515 -17.53726 -17.37601 -17.04276 -16.74611 -16.45876 -16.24789 -15.86200 -15.63598 -15.02308 -14.78533 -14.76497 -14.36354 -14.24499 -14.01414 -13.95708 -13.70159 -13.55049 -13.35298 -13.17502 -13.07618 -12.90158 -12.79609 -12.64555 -12.58693 -12.43367 -12.25508 -12.22693 -11.92453 -11.72017 -11.71088 -11.60495 -10.76842 -10.66633 -10.63007 -10.30605 -9.85139 -9.53243 -8.25136 -6.39661 0.20979 0.40568 1.10598 1.34291 1.35772 1.37919 1.49365 1.60767 2.31639 2.43869 2.89075 3.04700 3.39121 3.40308 3.55776 3.71303 3.78586 3.84558 4.02426 4.07950 4.16304 4.24857 4.29231 4.31073 4.41783 4.54722 4.60754 4.61425 4.64172 4.67959 4.73250 4.85999 4.86431 4.93938 4.95842 5.08896 5.12143 5.18672 5.29534 5.31832 5.34820 5.41181 5.50217 5.76788 5.85249 6.02050 6.53156 6.67623 6.69182 7.11034 7.18872 7.34403 8.82323 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.001934 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.782020 B =14474.224260 C =15306.459632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.078 3.922 3 H 0.111 0.889 4 O -0.345 6.345 5 C 0.456 3.544 6 O -0.535 6.535 7 C -0.107 4.107 8 C -0.089 4.089 9 C -0.065 4.065 10 C 0.109 3.891 11 C -0.178 4.178 12 C -0.080 4.080 13 C -0.181 4.181 14 C 0.082 3.918 15 N -0.515 5.515 16 C 0.499 3.501 17 O -0.579 6.579 18 N -0.599 5.599 19 C 0.068 3.932 20 C 0.259 3.741 21 C -0.547 4.547 22 H 0.051 0.949 23 C 0.009 3.991 24 N -0.925 5.925 25 Si 0.968 3.032 26 H -0.270 1.270 27 H -0.267 1.267 28 H -0.280 1.280 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.169 0.831 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.034 0.966 46 H 0.002 0.998 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.236 8.522 -29.112 30.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 H 0.128 0.872 4 O -0.261 6.261 5 C 0.301 3.699 6 O -0.424 6.424 7 C -0.144 4.144 8 C -0.127 4.127 9 C -0.103 4.103 10 C -0.028 4.028 11 C -0.197 4.197 12 C -0.106 4.106 13 C -0.201 4.201 14 C -0.075 4.075 15 N -0.225 5.225 16 C 0.286 3.714 17 O -0.458 6.458 18 N -0.331 5.331 19 C -0.074 4.074 20 C 0.138 3.862 21 C -0.585 4.585 22 H 0.069 0.931 23 C -0.190 4.190 24 N -0.564 5.564 25 Si 0.792 3.208 26 H -0.194 1.194 27 H -0.192 1.192 28 H -0.206 1.206 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.173 0.827 39 H 0.178 0.822 40 H 0.177 0.823 41 H 0.186 0.814 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.052 0.948 46 H 0.020 0.980 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.736 8.136 -28.508 29.881 hybrid contribution 1.554 0.437 0.355 1.653 sum -2.182 8.573 -28.153 29.510 Atomic orbital electron populations 1.22391 0.89364 1.04523 1.06004 1.22474 0.97802 0.96542 0.81205 0.87191 1.86632 1.76937 1.42456 1.20070 1.24721 0.73359 0.85849 0.85923 1.90630 1.49418 1.17741 1.84626 1.21589 1.05540 1.00279 0.86957 1.21190 1.02309 0.96563 0.92634 1.20586 1.04242 0.95073 0.90403 1.21547 0.89632 0.95440 0.96187 1.22327 0.98872 1.00575 0.97950 1.22015 0.99899 0.93256 0.95418 1.22469 0.93883 1.01655 1.02055 1.23159 0.98745 0.94299 0.91305 1.67456 1.32757 1.06371 1.15873 1.20670 0.80655 0.84844 0.85185 1.90658 1.39582 1.28705 1.86891 1.48040 1.50125 1.29523 1.05454 1.22235 0.94771 0.86305 1.04050 1.18864 0.93967 0.91858 0.81465 1.21712 1.05998 1.19207 1.11590 0.93085 1.25839 1.01777 0.95235 0.96171 1.70043 1.40575 1.26986 1.18826 0.85365 0.78753 0.78267 0.78401 1.19433 1.19214 1.20611 0.91207 0.87104 0.89630 0.84830 0.85581 0.92867 0.91764 0.88607 0.87625 0.82689 0.82248 0.82345 0.81408 0.89559 0.90645 0.89532 0.94800 0.97976 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 9.18 71.98 0.66 -3.45 16 2 C 0.08 2.62 2.18 29.85 0.07 2.68 16 3 H 0.11 3.56 6.41 -2.39 -0.02 3.54 16 4 O -0.35 -11.63 9.42 -45.05 -0.42 -12.05 16 5 C 0.46 12.89 7.93 71.24 0.56 13.45 16 6 O -0.53 -17.27 15.20 21.97 0.33 -16.94 16 7 C -0.11 -1.94 5.81 29.85 0.17 -1.76 16 8 C -0.09 -1.65 4.36 30.60 0.13 -1.51 16 9 C -0.07 -0.88 5.61 29.85 0.17 -0.71 16 10 C 0.11 1.86 6.18 42.55 0.26 2.12 16 11 C -0.18 -2.29 9.71 22.36 0.22 -2.07 16 12 C -0.08 -0.86 10.18 22.47 0.23 -0.63 16 13 C -0.18 -2.03 10.11 22.36 0.23 -1.80 16 14 C 0.08 1.26 11.18 84.67 0.95 2.21 16 15 N -0.51 -10.41 9.88 -183.88 -1.82 -12.22 16 16 C 0.50 22.14 7.15 87.66 0.63 22.77 16 17 O -0.58 -31.70 16.08 15.75 0.25 -31.45 16 18 N -0.60 -25.89 2.86 -851.12 -2.43 -28.32 16 19 C 0.07 2.02 8.80 127.77 1.12 3.15 16 20 C 0.26 14.04 5.16 85.63 0.44 14.49 16 21 C -0.55 -31.84 9.39 25.60 0.24 -31.60 16 22 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 23 C 0.01 0.53 5.46 84.66 0.46 0.99 16 24 N -0.92 -55.78 13.29 21.45 0.28 -55.49 16 25 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 28 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.11 2.28 4.53 -2.39 -0.01 2.27 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 35 H 0.06 1.45 7.90 -2.39 -0.02 1.43 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 37 H 0.11 0.92 7.87 -2.39 -0.02 0.90 16 38 H 0.16 1.23 7.95 -2.91 -0.02 1.21 16 39 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 40 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 41 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.09 2.00 6.95 -2.39 -0.02 1.99 16 43 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 44 H 0.09 2.11 6.01 -2.39 -0.01 2.10 16 45 H 0.03 1.82 8.07 -2.39 -0.02 1.80 16 46 H 0.00 0.13 7.42 -2.38 -0.02 0.11 16 47 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -83.83 396.28 5.74 -78.09 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.97 Total: 12.81 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 6.54 Total: 18.31 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -3.96 Total: -96.04 kcal Atomic # 8 Polarization: -60.60 SS G_CDS: 0.16 Total: -60.44 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -83.83 5.74 -78.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741334270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.917 kcal (2) G-P(sol) polarization free energy of solvation -83.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds