Wall clock time and date at job start Tue Mar 31 2020 18:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47277 * 2 1 4 4 C 1.50699 * 109.47221 * 120.00423 * 2 1 3 5 5 C 1.38625 * 119.54387 * 274.99889 * 4 2 1 6 6 C 1.38586 * 119.35550 * 180.02562 * 5 4 2 7 7 C 1.38638 * 118.48975 * 0.02562 * 6 5 4 8 8 C 1.39309 * 119.05645 * 359.97438 * 7 6 5 9 9 C 1.48071 * 119.72448 * 179.97438 * 8 7 6 10 10 O 1.21425 * 120.00178 * 359.97438 * 9 8 7 11 11 O 1.34681 * 119.99607 * 179.97438 * 9 8 7 12 12 C 1.45204 * 116.99560 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46942 * 30.00478 * 12 11 9 14 14 C 1.52995 * 109.47444 * 270.00110 * 12 11 9 15 15 C 1.50698 * 109.46692 * 149.99606 * 12 11 9 16 16 O 1.21280 * 120.00203 * 16.03777 * 15 12 11 17 17 N 1.34779 * 120.00030 * 196.02557 * 15 12 11 18 18 C 1.46499 * 119.99988 * 5.37097 * 17 15 12 19 19 C 1.46498 * 120.00081 * 185.37169 * 17 15 12 20 20 C 1.50702 * 109.47304 * 90.00354 * 19 17 15 21 21 H 1.08001 * 119.99689 * 359.97438 * 20 19 17 22 22 C 1.37874 * 119.99989 * 180.02562 * 20 19 17 23 23 N 1.31519 * 120.00227 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99902 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47109 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46754 * 120.00104 * 24 22 20 27 27 H 1.48498 * 109.47283 * 239.99489 * 24 22 20 28 28 N 1.31475 * 119.54762 * 95.27668 * 4 2 1 29 29 H 1.09001 * 109.46760 * 299.99886 * 1 2 3 30 30 H 1.09004 * 109.46988 * 59.99061 * 1 2 3 31 31 H 1.08995 * 109.47440 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46940 * 240.00524 * 2 1 3 33 33 H 1.09004 * 109.46876 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47379 * 300.00373 * 3 2 1 35 35 H 1.09001 * 109.47133 * 60.00341 * 3 2 1 36 36 H 1.07998 * 120.32486 * 0.04271 * 5 4 2 37 37 H 1.07996 * 120.75700 * 179.97438 * 6 5 4 38 38 H 1.07994 * 120.47003 * 180.02562 * 7 6 5 39 39 H 1.09000 * 109.46932 * 186.13764 * 14 12 11 40 40 H 1.08999 * 109.47044 * 66.13818 * 14 12 11 41 41 H 1.08995 * 109.46900 * 306.14146 * 14 12 11 42 42 H 1.09006 * 109.47084 * 84.81792 * 18 17 15 43 43 H 1.08994 * 109.47590 * 204.81862 * 18 17 15 44 44 H 1.09006 * 109.47202 * 324.82157 * 18 17 15 45 45 H 1.09001 * 109.47134 * 210.00388 * 19 17 15 46 46 H 1.09001 * 109.47100 * 330.00088 * 19 17 15 47 47 H 0.96998 * 120.00236 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1611 -0.0099 2.4196 6 6 2.6240 -0.6670 3.5486 7 6 2.9444 -2.0119 3.4462 8 6 2.7902 -2.6526 2.2188 9 6 3.1285 -4.0886 2.0926 10 8 3.5388 -4.7027 3.0564 11 8 2.9810 -4.7136 0.9087 12 6 3.3325 -6.1216 0.8584 13 1 3.1572 -6.5749 1.8341 14 6 4.8097 -6.2656 0.4871 15 6 2.4844 -6.8143 -0.1769 16 8 1.8832 -6.1617 -1.0037 17 7 2.3941 -8.1590 -0.1841 18 6 3.0234 -8.9411 0.8828 19 6 1.6666 -8.8385 -1.2589 20 6 2.6141 -9.1479 -2.3893 21 1 3.6540 -8.8661 -2.3147 22 6 2.1531 -9.7897 -3.5191 23 7 0.8866 -10.1325 -3.6102 24 14 3.3273 -10.1726 -4.9205 25 1 4.6872 -9.6877 -4.5733 26 1 3.3679 -11.6400 -5.1454 27 1 2.8603 -9.4952 -6.1567 28 7 2.3476 -1.9849 1.1599 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.9030 1.0378 2.4659 37 1 2.7334 -0.1431 4.4866 38 1 3.3075 -2.5554 4.3059 39 1 5.0469 -7.3196 0.3426 40 1 5.4271 -5.8608 1.2891 41 1 5.0075 -5.7189 -0.4349 42 1 2.3475 -9.0019 1.7359 43 1 3.2393 -9.9454 0.5183 44 1 3.9516 -8.4581 1.1884 45 1 1.2396 -9.7664 -0.8785 46 1 0.8671 -8.1925 -1.6215 47 1 0.5623 -10.5843 -4.4049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762046838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:57 Heat of formation + Delta-G solvation = -84.155519 kcal Electronic energy + Delta-G solvation = -28655.063404 eV Core-core repulsion = 24610.386324 eV Total energy + Delta-G solvation = -4044.677080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13619 -40.16693 -38.81462 -36.49653 -35.79718 -34.83844 -33.10270 -32.74643 -31.57509 -30.63866 -27.76831 -27.52027 -26.07570 -25.60205 -24.24428 -24.17883 -22.69886 -21.50416 -20.25567 -18.78678 -18.37436 -17.27049 -16.62629 -16.49575 -16.43549 -16.11561 -15.83691 -15.19786 -14.97853 -14.77833 -14.49961 -14.35021 -14.13483 -13.70711 -13.50963 -13.14218 -13.09232 -12.84458 -12.64130 -12.32646 -12.30372 -12.12135 -12.05004 -11.76197 -11.70089 -11.46887 -11.37351 -11.21947 -11.18001 -10.90256 -10.83392 -10.68710 -10.54561 -10.27830 -10.16084 -9.75833 -9.61960 -9.38226 -8.86061 -8.44010 -7.68282 -6.04625 -4.09766 0.23918 0.88080 2.24923 2.36353 3.28326 3.30315 3.38264 3.42521 3.49831 3.64433 3.94876 4.25712 4.43806 4.52273 4.57452 4.64816 4.74258 4.86591 4.88959 4.92437 5.02289 5.09336 5.14458 5.30002 5.32163 5.37399 5.50143 5.52027 5.57516 5.59949 5.66305 5.71897 5.77110 5.80509 5.89202 6.00389 6.01708 6.11054 6.21018 6.26600 6.35344 7.01166 7.39907 7.43306 7.51019 7.76583 7.91784 8.21616 8.32760 8.87151 9.02535 9.55373 11.03535 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.002699 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.705786 B =10373.148141 C =11589.074483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.147 4.147 4 C 0.136 3.864 5 C -0.141 4.141 6 C -0.082 4.082 7 C -0.113 4.113 8 C 0.100 3.900 9 C 0.521 3.479 10 O -0.503 6.503 11 O -0.299 6.299 12 C 0.067 3.933 13 H 0.103 0.897 14 C -0.164 4.164 15 C 0.510 3.490 16 O -0.515 6.515 17 N -0.597 5.597 18 C 0.074 3.926 19 C 0.245 3.755 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 N -0.426 5.426 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.047 0.953 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 20.760 15.810 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 C -0.204 4.204 4 C -0.006 4.006 5 C -0.161 4.161 6 C -0.108 4.108 7 C -0.133 4.133 8 C -0.036 4.036 9 C 0.364 3.636 10 O -0.391 6.391 11 O -0.212 6.212 12 C 0.009 3.991 13 H 0.121 0.879 14 C -0.222 4.222 15 C 0.294 3.706 16 O -0.390 6.390 17 N -0.331 5.331 18 C -0.070 4.070 19 C 0.127 3.873 20 C -0.567 4.567 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.208 1.208 28 N -0.137 5.137 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.830 20.281 14.708 25.343 hybrid contribution 0.806 -0.108 0.159 0.828 sum 4.636 20.173 14.867 25.484 Atomic orbital electron populations 1.21812 0.93226 1.02903 1.02074 1.20123 0.96538 0.95267 0.95001 1.21934 1.01373 0.94726 1.02412 1.21395 0.94707 0.89175 0.95283 1.22332 0.98760 1.01869 0.93124 1.21597 0.96271 0.93679 0.99255 1.22093 0.98110 0.95287 0.97834 1.20023 1.01287 0.91581 0.90739 1.20867 0.74320 0.87006 0.81400 1.90815 1.42867 1.66249 1.39160 1.86821 1.77003 1.24621 1.32778 1.22766 0.96456 0.78869 1.01055 0.87936 1.22163 0.92412 1.04326 1.03266 1.19714 0.82452 0.83030 0.85383 1.90712 1.44900 1.64365 1.39050 1.48069 1.53862 1.04405 1.26798 1.21828 0.96870 0.97966 0.90350 1.19369 0.92361 0.92182 0.83424 1.21471 0.95866 1.37904 1.01437 0.92295 1.24941 0.95270 0.95619 0.98273 1.69945 1.13758 1.40611 1.28950 0.86431 0.81016 0.77772 0.82133 1.19765 1.20962 1.20833 1.67550 1.07251 1.08608 1.30246 0.92650 0.91562 0.91817 0.88452 0.92292 0.91498 0.92260 0.83817 0.83627 0.83148 0.89372 0.91298 0.90536 0.93467 0.90083 0.92269 0.94632 0.93559 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.18 37.16 0.34 -0.86 16 2 C -0.05 -0.46 3.23 -91.77 -0.30 -0.75 16 3 C -0.15 -0.91 8.62 37.16 0.32 -0.59 16 4 C 0.14 1.48 5.79 -82.60 -0.48 1.00 16 5 C -0.14 -1.11 9.18 -39.31 -0.36 -1.47 16 6 C -0.08 -0.61 10.17 -39.31 -0.40 -1.01 16 7 C -0.11 -1.16 9.63 -39.04 -0.38 -1.53 16 8 C 0.10 1.40 6.75 -83.03 -0.56 0.84 16 9 C 0.52 8.48 7.92 34.76 0.28 8.76 16 10 O -0.50 -8.16 15.58 -19.21 -0.30 -8.46 16 11 O -0.30 -5.63 9.28 -46.96 -0.44 -6.07 16 12 C 0.07 1.20 2.14 -27.89 -0.06 1.14 16 13 H 0.10 1.65 6.31 -51.93 -0.33 1.32 16 14 C -0.16 -2.49 9.19 37.15 0.34 -2.15 16 15 C 0.51 11.46 6.95 -10.99 -0.08 11.39 16 16 O -0.52 -13.97 16.13 -13.54 -0.22 -14.19 16 17 N -0.60 -13.11 2.86 -182.95 -0.52 -13.63 16 18 C 0.07 1.20 9.79 59.85 0.59 1.78 16 19 C 0.25 6.52 5.18 -5.19 -0.03 6.49 16 20 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 21 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 24 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 N -0.43 -6.19 10.03 -6.07 -0.06 -6.26 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.27 6.48 -51.93 -0.34 -0.06 16 36 H 0.14 0.69 6.30 -52.49 -0.33 0.36 16 37 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 38 H 0.15 1.33 7.64 -52.49 -0.40 0.93 16 39 H 0.09 1.25 6.33 -51.93 -0.33 0.92 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 44 H 0.06 0.81 4.92 -51.93 -0.26 0.55 16 45 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 46 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -36.09 395.50 -8.02 -44.12 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.97 Total: -1.75 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -1.19 Total: 9.34 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.15 Total: -45.86 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.95 Total: -28.72 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.09 -8.02 -44.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762046838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.037 kcal (2) G-P(sol) polarization free energy of solvation -36.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds