Wall clock time and date at job start Tue Mar 31 2020 18:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47277 * 2 1 4 4 C 1.50699 * 109.47221 * 120.00423 * 2 1 3 5 5 C 1.38625 * 119.54387 * 274.99889 * 4 2 1 6 6 C 1.38586 * 119.35550 * 180.02562 * 5 4 2 7 7 C 1.38638 * 118.48975 * 0.02562 * 6 5 4 8 8 C 1.39309 * 119.05645 * 359.97438 * 7 6 5 9 9 C 1.48071 * 119.72448 * 179.97438 * 8 7 6 10 10 O 1.21425 * 120.00178 * 359.97438 * 9 8 7 11 11 O 1.34681 * 119.99607 * 179.97438 * 9 8 7 12 12 C 1.45204 * 116.99560 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46942 * 30.00478 * 12 11 9 14 14 C 1.52995 * 109.47444 * 270.00110 * 12 11 9 15 15 C 1.50698 * 109.46692 * 149.99606 * 12 11 9 16 16 O 1.21280 * 120.00203 * 16.03777 * 15 12 11 17 17 N 1.34779 * 120.00030 * 196.02557 * 15 12 11 18 18 C 1.46499 * 119.99988 * 5.37097 * 17 15 12 19 19 C 1.46498 * 120.00081 * 185.37169 * 17 15 12 20 20 C 1.50702 * 109.47304 * 90.00354 * 19 17 15 21 21 H 1.08001 * 119.99689 * 359.97438 * 20 19 17 22 22 C 1.37874 * 119.99989 * 180.02562 * 20 19 17 23 23 N 1.31519 * 120.00227 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99902 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47109 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46754 * 120.00104 * 24 22 20 27 27 H 1.48498 * 109.47283 * 239.99489 * 24 22 20 28 28 N 1.31475 * 119.54762 * 95.27668 * 4 2 1 29 29 H 1.09001 * 109.46760 * 299.99886 * 1 2 3 30 30 H 1.09004 * 109.46988 * 59.99061 * 1 2 3 31 31 H 1.08995 * 109.47440 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46940 * 240.00524 * 2 1 3 33 33 H 1.09004 * 109.46876 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47379 * 300.00373 * 3 2 1 35 35 H 1.09001 * 109.47133 * 60.00341 * 3 2 1 36 36 H 1.07998 * 120.32486 * 0.04271 * 5 4 2 37 37 H 1.07996 * 120.75700 * 179.97438 * 6 5 4 38 38 H 1.07994 * 120.47003 * 180.02562 * 7 6 5 39 39 H 1.09000 * 109.46932 * 186.13764 * 14 12 11 40 40 H 1.08999 * 109.47044 * 66.13818 * 14 12 11 41 41 H 1.08995 * 109.46900 * 306.14146 * 14 12 11 42 42 H 1.09006 * 109.47084 * 84.81792 * 18 17 15 43 43 H 1.08994 * 109.47590 * 204.81862 * 18 17 15 44 44 H 1.09006 * 109.47202 * 324.82157 * 18 17 15 45 45 H 1.09001 * 109.47134 * 210.00388 * 19 17 15 46 46 H 1.09001 * 109.47100 * 330.00088 * 19 17 15 47 47 H 0.96998 * 120.00236 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1611 -0.0099 2.4196 6 6 2.6240 -0.6670 3.5486 7 6 2.9444 -2.0119 3.4462 8 6 2.7902 -2.6526 2.2188 9 6 3.1285 -4.0886 2.0926 10 8 3.5388 -4.7027 3.0564 11 8 2.9810 -4.7136 0.9087 12 6 3.3325 -6.1216 0.8584 13 1 3.1572 -6.5749 1.8341 14 6 4.8097 -6.2656 0.4871 15 6 2.4844 -6.8143 -0.1769 16 8 1.8832 -6.1617 -1.0037 17 7 2.3941 -8.1590 -0.1841 18 6 3.0234 -8.9411 0.8828 19 6 1.6666 -8.8385 -1.2589 20 6 2.6141 -9.1479 -2.3893 21 1 3.6540 -8.8661 -2.3147 22 6 2.1531 -9.7897 -3.5191 23 7 0.8866 -10.1325 -3.6102 24 14 3.3273 -10.1726 -4.9205 25 1 4.6872 -9.6877 -4.5733 26 1 3.3679 -11.6400 -5.1454 27 1 2.8603 -9.4952 -6.1567 28 7 2.3476 -1.9849 1.1599 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.9030 1.0378 2.4659 37 1 2.7334 -0.1431 4.4866 38 1 3.3075 -2.5554 4.3059 39 1 5.0469 -7.3196 0.3426 40 1 5.4271 -5.8608 1.2891 41 1 5.0075 -5.7189 -0.4349 42 1 2.3475 -9.0019 1.7359 43 1 3.2393 -9.9454 0.5183 44 1 3.9516 -8.4581 1.1884 45 1 1.2396 -9.7664 -0.8785 46 1 0.8671 -8.1925 -1.6215 47 1 0.5623 -10.5843 -4.4049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762046838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:57 Heat of formation + Delta-G solvation = -106.822596 kcal Electronic energy + Delta-G solvation = -28656.046322 eV Core-core repulsion = 24610.386324 eV Total energy + Delta-G solvation = -4045.659998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.20745 -41.31532 -40.40758 -37.81118 -36.72495 -36.53778 -34.88563 -33.84803 -33.01238 -31.46851 -29.73424 -28.11433 -27.62123 -26.68090 -25.81991 -24.96741 -24.25792 -22.64959 -21.16155 -20.44134 -19.51834 -18.71747 -18.36900 -17.78093 -17.65186 -17.38987 -16.97501 -16.79262 -16.31600 -16.17874 -15.74598 -15.43740 -15.06294 -14.81161 -14.70659 -14.33326 -14.28581 -14.07902 -13.75861 -13.64417 -13.58841 -13.41494 -13.31485 -13.13323 -12.88159 -12.82667 -12.71208 -12.55205 -12.53886 -12.23346 -12.11024 -12.02080 -11.93763 -11.83209 -11.70817 -11.01289 -10.69846 -10.66819 -10.54432 -10.16539 -9.55485 -8.24903 -6.39933 -0.62330 0.17317 1.09990 1.21276 1.36021 1.38802 1.49713 1.56430 2.24179 2.39534 2.66145 2.89250 3.05238 3.35080 3.44201 3.66470 3.74272 3.77973 3.86489 3.98422 4.13259 4.23009 4.25515 4.26491 4.35736 4.47452 4.53545 4.61515 4.68548 4.80007 4.81955 4.88133 4.93918 4.94389 4.95901 5.02623 5.03718 5.12031 5.18250 5.22481 5.33744 5.40801 5.49453 5.54692 5.76055 6.00987 6.28975 6.55264 6.68930 6.84060 7.16612 7.33439 8.83142 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.002699 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.705786 B =10373.148141 C =11589.074483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.053 4.053 3 C -0.139 4.139 4 C 0.117 3.883 5 C -0.123 4.123 6 C -0.069 4.069 7 C -0.106 4.106 8 C 0.061 3.939 9 C 0.518 3.482 10 O -0.509 6.509 11 O -0.328 6.328 12 C 0.076 3.924 13 H 0.125 0.875 14 C -0.157 4.157 15 C 0.501 3.499 16 O -0.578 6.578 17 N -0.600 5.600 18 C 0.066 3.934 19 C 0.258 3.742 20 C -0.544 4.544 21 H 0.058 0.942 22 C 0.007 3.993 23 N -0.929 5.929 24 Si 0.971 3.029 25 H -0.265 1.265 26 H -0.268 1.268 27 H -0.283 1.283 28 N -0.476 5.476 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.185 0.815 37 H 0.194 0.806 38 H 0.164 0.836 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.032 0.968 46 H -0.002 1.002 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.051 22.817 18.184 29.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.197 4.197 4 C -0.025 4.025 5 C -0.142 4.142 6 C -0.094 4.094 7 C -0.126 4.126 8 C -0.074 4.074 9 C 0.362 3.638 10 O -0.397 6.397 11 O -0.242 6.242 12 C 0.018 3.982 13 H 0.142 0.858 14 C -0.214 4.214 15 C 0.288 3.712 16 O -0.457 6.457 17 N -0.332 5.332 18 C -0.075 4.075 19 C 0.137 3.863 20 C -0.582 4.582 21 H 0.076 0.924 22 C -0.192 4.192 23 N -0.568 5.568 24 Si 0.795 3.205 25 H -0.189 1.189 26 H -0.193 1.193 27 H -0.209 1.209 28 N -0.188 5.188 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.202 0.798 37 H 0.211 0.789 38 H 0.181 0.819 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.050 0.950 46 H 0.016 0.984 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.669 22.307 17.140 28.697 hybrid contribution 0.162 -0.659 -0.516 0.853 sum 5.831 21.648 16.625 27.911 Atomic orbital electron populations 1.21791 0.92916 1.01219 1.03723 1.20184 0.96802 0.96888 0.93377 1.21901 1.01186 0.92445 1.04122 1.21808 0.95031 0.88402 0.97222 1.22771 0.96344 1.03401 0.91655 1.22153 0.94024 0.92316 1.00886 1.22351 0.97202 0.96633 0.96461 1.20001 1.04427 0.90552 0.92401 1.21424 0.73864 0.88077 0.80418 1.90773 1.43474 1.66699 1.38794 1.86829 1.77799 1.24836 1.34759 1.22666 0.96654 0.78878 0.99987 0.85765 1.22165 0.90656 1.05113 1.03495 1.20594 0.81986 0.82987 0.85649 1.90670 1.47484 1.65727 1.41827 1.48065 1.53388 1.04878 1.26889 1.22172 0.98553 0.97577 0.89236 1.18883 0.91545 0.91055 0.84778 1.21722 0.95969 1.38108 1.02443 0.92380 1.25892 0.97039 0.95253 1.01011 1.70064 1.15648 1.41148 1.29959 0.85323 0.78810 0.78259 0.78152 1.18877 1.19258 1.20873 1.67394 1.09069 1.10750 1.31610 0.90460 0.90401 0.95125 0.91645 0.92515 0.90707 0.89632 0.79772 0.78868 0.81887 0.88086 0.88596 0.92090 0.90883 0.89879 0.89044 0.94995 0.98415 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.18 71.98 0.66 -1.68 16 2 C -0.05 -0.97 3.23 -11.54 -0.04 -1.01 16 3 C -0.14 -1.41 8.62 71.98 0.62 -0.79 16 4 C 0.12 2.49 5.79 42.70 0.25 2.74 16 5 C -0.12 -1.50 9.18 22.45 0.21 -1.29 16 6 C -0.07 -0.75 10.17 22.45 0.23 -0.52 16 7 C -0.11 -1.97 9.63 22.62 0.22 -1.75 16 8 C 0.06 1.74 6.75 41.87 0.28 2.02 16 9 C 0.52 17.28 7.92 70.43 0.56 17.84 16 10 O -0.51 -16.28 15.58 20.08 0.31 -15.97 16 11 O -0.33 -12.97 9.28 -49.67 -0.46 -13.43 16 12 C 0.08 2.77 2.14 29.85 0.06 2.83 16 13 H 0.12 3.90 6.31 -2.39 -0.02 3.88 16 14 C -0.16 -4.66 9.19 71.98 0.66 -4.00 16 15 C 0.50 23.58 6.95 87.66 0.61 24.19 16 16 O -0.58 -33.73 16.13 15.23 0.25 -33.48 16 17 N -0.60 -27.10 2.86 -851.13 -2.43 -29.53 16 18 C 0.07 2.08 9.79 127.77 1.25 3.33 16 19 C 0.26 14.43 5.18 85.63 0.44 14.88 16 20 C -0.54 -31.86 9.39 25.60 0.24 -31.62 16 21 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 22 C 0.01 0.41 5.46 84.65 0.46 0.88 16 23 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 24 Si 0.97 45.46 29.54 68.60 2.03 47.48 16 25 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 28 N -0.48 -14.53 10.03 -173.12 -1.74 -16.26 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.41 6.48 -2.39 -0.02 0.40 16 36 H 0.19 0.71 6.30 -2.91 -0.02 0.69 16 37 H 0.19 0.29 8.06 -2.91 -0.02 0.27 16 38 H 0.16 2.51 7.64 -2.91 -0.02 2.49 16 39 H 0.10 2.70 6.33 -2.39 -0.02 2.68 16 40 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.08 2.59 8.03 -2.39 -0.02 2.57 16 44 H 0.09 2.28 4.92 -2.38 -0.01 2.27 16 45 H 0.03 1.78 8.07 -2.39 -0.02 1.76 16 46 H 0.00 -0.15 7.36 -2.39 -0.02 -0.17 16 47 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -86.28 395.50 5.93 -80.35 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.98 Total: 11.59 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: 6.72 Total: 26.04 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -3.88 Total: -102.57 kcal Atomic # 8 Polarization: -62.98 SS G_CDS: 0.10 Total: -62.88 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -86.28 5.93 -80.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762046838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.476 kcal (2) G-P(sol) polarization free energy of solvation -86.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds