Wall clock time and date at job start Tue Mar 31 2020 18:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47200 * 2 1 4 4 C 1.50698 * 109.47127 * 119.99925 * 2 1 3 5 5 C 1.38633 * 119.54426 * 275.02489 * 4 2 1 6 6 C 1.38580 * 119.35505 * 180.02562 * 5 4 2 7 7 C 1.38642 * 118.49189 * 359.72619 * 6 5 4 8 8 C 1.39311 * 119.05240 * 0.51017 * 7 6 5 9 9 C 1.48063 * 119.71914 * 179.75293 * 8 7 6 10 10 O 1.21432 * 120.00727 * 359.73118 * 9 8 7 11 11 O 1.34687 * 119.99379 * 179.72847 * 9 8 7 12 12 C 1.45206 * 116.99357 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47146 * 329.99265 * 12 11 9 14 14 C 1.52997 * 109.47226 * 90.00238 * 12 11 9 15 15 C 1.50706 * 109.46448 * 210.00030 * 12 11 9 16 16 O 1.21283 * 120.00236 * 354.99931 * 15 12 11 17 17 N 1.34774 * 119.99861 * 175.00107 * 15 12 11 18 18 C 1.46507 * 120.00108 * 359.97438 * 17 15 12 19 19 C 1.46496 * 120.00367 * 180.02562 * 17 15 12 20 20 C 1.50695 * 109.47370 * 89.99805 * 19 17 15 21 21 H 1.08005 * 120.00163 * 0.02562 * 20 19 17 22 22 C 1.37882 * 120.00369 * 180.02562 * 20 19 17 23 23 N 1.31507 * 120.00250 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99522 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47000 * 90.00593 * 24 22 20 26 26 H 1.48499 * 109.46881 * 210.00064 * 24 22 20 27 27 H 1.48501 * 109.47269 * 330.00189 * 24 22 20 28 28 N 1.31477 * 119.55262 * 94.99718 * 4 2 1 29 29 H 1.08999 * 109.47024 * 60.00239 * 1 2 3 30 30 H 1.09000 * 109.47244 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47494 * 300.00084 * 1 2 3 32 32 H 1.08998 * 109.47494 * 239.99916 * 2 1 3 33 33 H 1.09000 * 109.47143 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46937 * 299.99815 * 3 2 1 35 35 H 1.08998 * 109.46965 * 59.99593 * 3 2 1 36 36 H 1.08000 * 120.32483 * 359.97033 * 5 4 2 37 37 H 1.08000 * 120.75711 * 180.02562 * 6 5 4 38 38 H 1.08002 * 120.47233 * 180.28636 * 7 6 5 39 39 H 1.09002 * 109.47153 * 299.99431 * 14 12 11 40 40 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 41 41 H 1.09004 * 109.47261 * 59.99603 * 14 12 11 42 42 H 1.09002 * 109.47123 * 89.99538 * 18 17 15 43 43 H 1.08997 * 109.47369 * 209.99929 * 18 17 15 44 44 H 1.09002 * 109.47042 * 330.00239 * 18 17 15 45 45 H 1.09001 * 109.47223 * 209.99860 * 19 17 15 46 46 H 1.09007 * 109.46674 * 329.99720 * 19 17 15 47 47 H 0.97000 * 120.00260 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1605 -0.0097 2.4198 6 6 2.6234 -0.6668 3.5488 7 6 2.9383 -2.0132 3.4480 8 6 2.7896 -2.6526 2.2192 9 6 3.1268 -4.0888 2.0935 10 8 3.5358 -4.7032 3.0578 11 8 2.9799 -4.7138 0.9095 12 6 3.3292 -6.1223 0.8600 13 1 4.1173 -6.3269 1.5847 14 6 2.0971 -6.9654 1.1946 15 6 3.8159 -6.4707 -0.5231 16 8 3.7785 -5.6403 -1.4062 17 7 4.2927 -7.7051 -0.7787 18 6 4.3383 -8.7082 0.2882 19 6 4.7663 -8.0437 -2.1230 20 6 6.2357 -7.7278 -2.2323 21 1 6.7641 -7.3164 -1.3850 22 6 6.9056 -7.9640 -3.4140 23 7 8.1878 -7.6878 -3.5096 24 14 5.9919 -8.6763 -4.8793 25 1 5.4387 -7.5711 -5.7027 26 1 6.9279 -9.4850 -5.7010 27 1 4.8826 -9.5391 -4.3993 28 7 2.3424 -1.9862 1.1615 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.9031 1.0381 2.4659 37 1 2.7316 -0.1431 4.4871 38 1 3.2973 -2.5576 4.3088 39 1 1.7451 -6.7134 2.1949 40 1 2.3593 -8.0228 1.1569 41 1 1.3091 -6.7608 0.4698 42 1 3.4041 -9.2696 0.2994 43 1 5.1699 -9.3901 0.1106 44 1 4.4749 -8.2111 1.2487 45 1 4.6085 -9.1065 -2.3068 46 1 4.2136 -7.4614 -2.8603 47 1 8.6592 -7.8544 -4.3408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762046839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:00 Heat of formation + Delta-G solvation = -77.753978 kcal Electronic energy + Delta-G solvation = -28712.688049 eV Core-core repulsion = 24668.288561 eV Total energy + Delta-G solvation = -4044.399489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13091 -40.19120 -38.92038 -36.51615 -35.79477 -34.99137 -33.10337 -32.72895 -31.64716 -30.65021 -28.29845 -27.53208 -26.29489 -25.60248 -24.23673 -24.16264 -22.49537 -21.41151 -20.25622 -18.85021 -18.38868 -17.27594 -16.94871 -16.64301 -16.44666 -16.14858 -15.84099 -15.31037 -15.02690 -14.81196 -14.63082 -14.19555 -13.90270 -13.78293 -13.47635 -13.43806 -13.11425 -12.87615 -12.73531 -12.42550 -12.30416 -12.28310 -12.20442 -11.84567 -11.76198 -11.51153 -11.46857 -11.37649 -11.18601 -10.95005 -10.84045 -10.68183 -10.51623 -10.25944 -10.14336 -9.74807 -9.53898 -9.36577 -8.97192 -8.58317 -7.76348 -6.07873 -4.07189 0.25613 0.89879 2.24984 2.35366 3.22330 3.30315 3.36110 3.38162 3.51456 3.61490 3.86895 4.26384 4.40305 4.50287 4.58916 4.66528 4.74343 4.77641 4.88834 4.93010 4.94884 5.06285 5.07801 5.25287 5.31289 5.36821 5.44639 5.50219 5.57162 5.58723 5.63344 5.64119 5.70224 5.79620 5.81214 5.96418 5.97273 6.01388 6.18434 6.22092 6.32520 6.66059 6.91696 7.26240 7.41632 7.60002 7.76848 8.13801 8.46343 8.86541 8.96092 9.51582 11.05505 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.002822 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.669610 B = 9921.248744 C =10995.463394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C -0.147 4.147 4 C 0.135 3.865 5 C -0.141 4.141 6 C -0.082 4.082 7 C -0.112 4.112 8 C 0.101 3.899 9 C 0.523 3.477 10 O -0.501 6.501 11 O -0.299 6.299 12 C 0.067 3.933 13 H 0.108 0.892 14 C -0.169 4.169 15 C 0.511 3.489 16 O -0.513 6.513 17 N -0.592 5.592 18 C 0.076 3.924 19 C 0.217 3.783 20 C -0.531 4.531 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.897 5.897 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.265 1.265 28 N -0.426 5.426 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.034 0.966 46 H 0.039 0.961 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.483 13.579 15.392 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.205 4.205 4 C -0.006 4.006 5 C -0.161 4.161 6 C -0.108 4.108 7 C -0.133 4.133 8 C -0.036 4.036 9 C 0.365 3.635 10 O -0.389 6.389 11 O -0.212 6.212 12 C 0.009 3.991 13 H 0.126 0.874 14 C -0.227 4.227 15 C 0.296 3.704 16 O -0.388 6.388 17 N -0.326 5.326 18 C -0.068 4.068 19 C 0.097 3.903 20 C -0.570 4.570 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.535 5.535 24 Si 0.704 3.296 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.190 1.190 28 N -0.137 5.137 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.052 0.948 46 H 0.057 0.943 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.289 13.287 14.249 25.395 hybrid contribution 0.035 -0.120 0.189 0.226 sum -16.253 13.168 14.438 25.417 Atomic orbital electron populations 1.21800 0.93368 1.02612 1.02069 1.20124 0.96365 0.95407 0.95084 1.21935 1.01598 0.94623 1.02349 1.21385 0.94809 0.89176 0.95226 1.22332 0.98759 1.01847 0.93129 1.21599 0.96234 0.93632 0.99312 1.22101 0.97988 0.95325 0.97852 1.19996 1.01319 0.91565 0.90689 1.20852 0.74289 0.86881 0.81451 1.90823 1.42702 1.66399 1.39013 1.86798 1.76700 1.24617 1.33080 1.22680 0.99650 0.78475 0.98326 0.87428 1.22285 0.96963 1.00661 1.02769 1.19737 0.79143 0.83014 0.88552 1.90725 1.54381 1.47230 1.46431 1.47722 1.61477 1.10560 1.12839 1.21871 1.01867 0.92791 0.90232 1.19714 0.95989 0.95846 0.78723 1.21329 0.92100 1.43352 1.00212 0.90736 1.24857 0.94774 0.95032 0.98322 1.69896 1.08510 1.48150 1.26934 0.86839 0.79891 0.79707 0.83184 1.19827 1.21049 1.19010 1.67531 1.07369 1.08756 1.30024 0.91615 0.92054 0.92645 0.88391 0.92141 0.91502 0.92275 0.83811 0.83607 0.83118 0.91224 0.89201 0.90885 0.93031 0.90082 0.92037 0.94828 0.94346 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.17 37.15 0.34 -0.75 16 2 C -0.05 -0.47 3.23 -91.77 -0.30 -0.76 16 3 C -0.15 -0.98 8.62 37.16 0.32 -0.66 16 4 C 0.14 1.50 5.79 -82.60 -0.48 1.02 16 5 C -0.14 -1.14 9.18 -39.31 -0.36 -1.50 16 6 C -0.08 -0.64 10.17 -39.31 -0.40 -1.04 16 7 C -0.11 -1.19 9.63 -39.03 -0.38 -1.57 16 8 C 0.10 1.45 6.75 -83.03 -0.56 0.89 16 9 C 0.52 8.66 7.92 34.76 0.28 8.94 16 10 O -0.50 -8.36 15.58 -19.21 -0.30 -8.66 16 11 O -0.30 -5.61 9.24 -47.12 -0.44 -6.04 16 12 C 0.07 1.18 2.17 -27.88 -0.06 1.11 16 13 H 0.11 1.79 6.15 -51.93 -0.32 1.47 16 14 C -0.17 -2.25 9.28 37.16 0.34 -1.91 16 15 C 0.51 11.21 7.10 -10.98 -0.08 11.13 16 16 O -0.51 -13.63 16.09 -14.05 -0.23 -13.86 16 17 N -0.59 -12.52 2.86 -182.95 -0.52 -13.04 16 18 C 0.08 1.17 8.92 59.85 0.53 1.71 16 19 C 0.22 5.39 4.23 -5.20 -0.02 5.37 16 20 C -0.53 -15.54 9.94 -34.44 -0.34 -15.88 16 21 H 0.07 2.40 8.06 -52.48 -0.42 1.97 16 22 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 23 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 24 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 25 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 28 N -0.43 -6.28 10.03 -6.07 -0.06 -6.35 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.29 6.48 -51.93 -0.34 -0.05 16 36 H 0.14 0.72 6.30 -52.49 -0.33 0.39 16 37 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.15 1.40 7.64 -52.49 -0.40 1.00 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.02 5.12 -51.93 -0.27 0.75 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.63 7.02 -51.93 -0.36 0.27 16 43 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 44 H 0.06 0.82 6.08 -51.93 -0.32 0.50 16 45 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 46 H 0.04 1.02 6.85 -51.92 -0.36 0.66 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -37.59 389.95 -7.69 -45.28 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.87 Total: -1.20 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -1.26 Total: 8.14 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.19 Total: -46.62 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.96 Total: -28.56 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.59 -7.69 -45.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762046839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.474 kcal (2) G-P(sol) polarization free energy of solvation -37.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds