Wall clock time and date at job start Tue Mar 31 2020 18:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47200 * 2 1 4 4 C 1.50698 * 109.47127 * 119.99925 * 2 1 3 5 5 C 1.38633 * 119.54426 * 275.02489 * 4 2 1 6 6 C 1.38580 * 119.35505 * 180.02562 * 5 4 2 7 7 C 1.38642 * 118.49189 * 359.72619 * 6 5 4 8 8 C 1.39311 * 119.05240 * 0.51017 * 7 6 5 9 9 C 1.48063 * 119.71914 * 179.75293 * 8 7 6 10 10 O 1.21432 * 120.00727 * 359.73118 * 9 8 7 11 11 O 1.34687 * 119.99379 * 179.72847 * 9 8 7 12 12 C 1.45206 * 116.99357 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47146 * 329.99265 * 12 11 9 14 14 C 1.52997 * 109.47226 * 90.00238 * 12 11 9 15 15 C 1.50706 * 109.46448 * 210.00030 * 12 11 9 16 16 O 1.21283 * 120.00236 * 354.99931 * 15 12 11 17 17 N 1.34774 * 119.99861 * 175.00107 * 15 12 11 18 18 C 1.46507 * 120.00108 * 359.97438 * 17 15 12 19 19 C 1.46496 * 120.00367 * 180.02562 * 17 15 12 20 20 C 1.50695 * 109.47370 * 89.99805 * 19 17 15 21 21 H 1.08005 * 120.00163 * 0.02562 * 20 19 17 22 22 C 1.37882 * 120.00369 * 180.02562 * 20 19 17 23 23 N 1.31507 * 120.00250 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99522 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47000 * 90.00593 * 24 22 20 26 26 H 1.48499 * 109.46881 * 210.00064 * 24 22 20 27 27 H 1.48501 * 109.47269 * 330.00189 * 24 22 20 28 28 N 1.31477 * 119.55262 * 94.99718 * 4 2 1 29 29 H 1.08999 * 109.47024 * 60.00239 * 1 2 3 30 30 H 1.09000 * 109.47244 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47494 * 300.00084 * 1 2 3 32 32 H 1.08998 * 109.47494 * 239.99916 * 2 1 3 33 33 H 1.09000 * 109.47143 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46937 * 299.99815 * 3 2 1 35 35 H 1.08998 * 109.46965 * 59.99593 * 3 2 1 36 36 H 1.08000 * 120.32483 * 359.97033 * 5 4 2 37 37 H 1.08000 * 120.75711 * 180.02562 * 6 5 4 38 38 H 1.08002 * 120.47233 * 180.28636 * 7 6 5 39 39 H 1.09002 * 109.47153 * 299.99431 * 14 12 11 40 40 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 41 41 H 1.09004 * 109.47261 * 59.99603 * 14 12 11 42 42 H 1.09002 * 109.47123 * 89.99538 * 18 17 15 43 43 H 1.08997 * 109.47369 * 209.99929 * 18 17 15 44 44 H 1.09002 * 109.47042 * 330.00239 * 18 17 15 45 45 H 1.09001 * 109.47223 * 209.99860 * 19 17 15 46 46 H 1.09007 * 109.46674 * 329.99720 * 19 17 15 47 47 H 0.97000 * 120.00260 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1605 -0.0097 2.4198 6 6 2.6234 -0.6668 3.5488 7 6 2.9383 -2.0132 3.4480 8 6 2.7896 -2.6526 2.2192 9 6 3.1268 -4.0888 2.0935 10 8 3.5358 -4.7032 3.0578 11 8 2.9799 -4.7138 0.9095 12 6 3.3292 -6.1223 0.8600 13 1 4.1173 -6.3269 1.5847 14 6 2.0971 -6.9654 1.1946 15 6 3.8159 -6.4707 -0.5231 16 8 3.7785 -5.6403 -1.4062 17 7 4.2927 -7.7051 -0.7787 18 6 4.3383 -8.7082 0.2882 19 6 4.7663 -8.0437 -2.1230 20 6 6.2357 -7.7278 -2.2323 21 1 6.7641 -7.3164 -1.3850 22 6 6.9056 -7.9640 -3.4140 23 7 8.1878 -7.6878 -3.5096 24 14 5.9919 -8.6763 -4.8793 25 1 5.4387 -7.5711 -5.7027 26 1 6.9279 -9.4850 -5.7010 27 1 4.8826 -9.5391 -4.3993 28 7 2.3424 -1.9862 1.1615 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.9031 1.0381 2.4659 37 1 2.7316 -0.1431 4.4871 38 1 3.2973 -2.5576 4.3088 39 1 1.7451 -6.7134 2.1949 40 1 2.3593 -8.0228 1.1569 41 1 1.3091 -6.7608 0.4698 42 1 3.4041 -9.2696 0.2994 43 1 5.1699 -9.3901 0.1106 44 1 4.4749 -8.2111 1.2487 45 1 4.6085 -9.1065 -2.3068 46 1 4.2136 -7.4614 -2.8603 47 1 8.6592 -7.8544 -4.3408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762046839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:59 Heat of formation + Delta-G solvation = -102.886897 kcal Electronic energy + Delta-G solvation = -28713.777894 eV Core-core repulsion = 24668.288561 eV Total energy + Delta-G solvation = -4045.489334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.22488 -41.34361 -40.45417 -37.82773 -36.79346 -36.54579 -34.89313 -33.86744 -33.10185 -31.49688 -30.19173 -28.11568 -27.75075 -26.65114 -25.66596 -24.97646 -24.04287 -22.62505 -21.17688 -20.46697 -19.55055 -19.17547 -18.39343 -17.80243 -17.66920 -17.41792 -16.97534 -16.79452 -16.55936 -15.82249 -15.81081 -15.37924 -15.11392 -14.94813 -14.71451 -14.50083 -14.35936 -14.17096 -13.80737 -13.73801 -13.63778 -13.48254 -13.36892 -13.12210 -12.86156 -12.82781 -12.66838 -12.55963 -12.44285 -12.11306 -12.06925 -12.00364 -11.93376 -11.83782 -11.77564 -11.02478 -10.86192 -10.74453 -10.56553 -10.17633 -9.53914 -8.36860 -6.43296 -0.63881 0.15993 1.06840 1.21105 1.31941 1.36903 1.45065 1.53156 2.21047 2.29457 2.64847 2.87385 2.97368 3.31892 3.42693 3.64333 3.73921 3.77763 3.84908 3.96789 4.12795 4.22500 4.26217 4.27935 4.35108 4.47257 4.55370 4.60651 4.68269 4.75286 4.80176 4.81822 4.87864 4.92190 4.93523 4.95472 5.02266 5.04564 5.10626 5.21889 5.34398 5.39629 5.40667 5.48750 5.53522 6.17318 6.27662 6.48396 6.57919 6.82209 7.11097 7.24630 8.80378 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.002822 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.669610 B = 9921.248744 C =10995.463394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.054 4.054 3 C -0.141 4.141 4 C 0.117 3.883 5 C -0.123 4.123 6 C -0.069 4.069 7 C -0.108 4.108 8 C 0.061 3.939 9 C 0.518 3.482 10 O -0.511 6.511 11 O -0.327 6.327 12 C 0.072 3.928 13 H 0.114 0.886 14 C -0.159 4.159 15 C 0.501 3.499 16 O -0.575 6.575 17 N -0.596 5.596 18 C 0.066 3.934 19 C 0.224 3.776 20 C -0.543 4.543 21 H 0.025 0.975 22 C 0.010 3.990 23 N -0.946 5.946 24 Si 0.951 3.049 25 H -0.278 1.278 26 H -0.273 1.273 27 H -0.232 1.232 28 N -0.475 5.475 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.186 0.814 37 H 0.194 0.806 38 H 0.162 0.838 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.020 0.980 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.850 14.232 17.309 29.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.073 4.073 3 C -0.199 4.199 4 C -0.025 4.025 5 C -0.142 4.142 6 C -0.094 4.094 7 C -0.128 4.128 8 C -0.074 4.074 9 C 0.362 3.638 10 O -0.400 6.400 11 O -0.241 6.241 12 C 0.014 3.986 13 H 0.132 0.868 14 C -0.216 4.216 15 C 0.288 3.712 16 O -0.455 6.455 17 N -0.328 5.328 18 C -0.075 4.075 19 C 0.102 3.898 20 C -0.581 4.581 21 H 0.043 0.957 22 C -0.188 4.188 23 N -0.585 5.585 24 Si 0.773 3.227 25 H -0.203 1.203 26 H -0.198 1.198 27 H -0.155 1.155 28 N -0.187 5.187 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.203 0.797 37 H 0.211 0.789 38 H 0.180 0.820 39 H 0.105 0.895 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.038 0.962 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.664 13.890 16.231 28.368 hybrid contribution 0.839 -0.189 -0.319 0.917 sum -17.826 13.700 15.912 27.544 Atomic orbital electron populations 1.21769 0.92224 1.01567 1.03740 1.20192 0.97326 0.96608 0.93199 1.21916 1.00955 0.92781 1.04222 1.21839 0.95032 0.88396 0.97201 1.22776 0.96358 1.03381 0.91669 1.22149 0.94026 0.92225 1.00994 1.22353 0.97215 0.96741 0.96510 1.19984 1.04461 0.90571 0.92354 1.21430 0.73822 0.87963 0.80597 1.90779 1.43476 1.66907 1.38858 1.86799 1.77159 1.25303 1.34858 1.22684 1.01788 0.79145 0.94968 0.86800 1.22291 0.94669 1.01112 1.03483 1.20600 0.78219 0.82489 0.89889 1.90679 1.57016 1.49055 1.48701 1.47812 1.60384 1.11641 1.12951 1.22262 1.04077 0.91913 0.89277 1.19444 0.92670 0.96890 0.80754 1.21556 0.94411 1.43152 0.99002 0.95688 1.25905 0.95638 0.95369 1.01878 1.70052 1.10589 1.49689 1.28206 0.85669 0.79408 0.79189 0.78406 1.20339 1.19787 1.15499 1.67383 1.09156 1.10904 1.31222 0.90395 0.94449 0.90446 0.91857 0.93107 0.90588 0.89449 0.79720 0.78895 0.82046 0.89451 0.86651 0.91303 0.88612 0.90485 0.89930 0.91870 0.96151 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.17 71.98 0.66 -1.34 16 2 C -0.05 -1.00 3.23 -11.54 -0.04 -1.03 16 3 C -0.14 -1.61 8.62 71.98 0.62 -0.99 16 4 C 0.12 2.56 5.79 42.71 0.25 2.81 16 5 C -0.12 -1.60 9.18 22.45 0.21 -1.39 16 6 C -0.07 -0.83 10.17 22.45 0.23 -0.60 16 7 C -0.11 -2.16 9.63 22.62 0.22 -1.94 16 8 C 0.06 1.81 6.75 41.87 0.28 2.09 16 9 C 0.52 17.97 7.92 70.43 0.56 18.53 16 10 O -0.51 -17.36 15.58 20.06 0.31 -17.04 16 11 O -0.33 -13.01 9.24 -49.60 -0.46 -13.47 16 12 C 0.07 2.58 2.17 29.85 0.06 2.65 16 13 H 0.11 3.85 6.15 -2.39 -0.01 3.84 16 14 C -0.16 -4.01 9.28 71.98 0.67 -3.34 16 15 C 0.50 22.83 7.10 87.66 0.62 23.45 16 16 O -0.58 -32.58 16.09 15.71 0.25 -32.33 16 17 N -0.60 -25.35 2.86 -851.11 -2.43 -27.78 16 18 C 0.07 1.92 8.92 127.77 1.14 3.06 16 19 C 0.22 11.21 4.23 85.63 0.36 11.57 16 20 C -0.54 -33.01 9.94 25.60 0.25 -32.75 16 21 H 0.02 1.71 8.06 -2.91 -0.02 1.68 16 22 C 0.01 0.61 5.47 84.66 0.46 1.08 16 23 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 24 Si 0.95 45.13 27.47 68.60 1.88 47.01 16 25 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 27 H -0.23 -9.70 6.54 99.48 0.65 -9.05 16 28 N -0.47 -14.79 10.03 -173.12 -1.74 -16.53 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.49 6.48 -2.39 -0.02 0.47 16 36 H 0.19 0.84 6.30 -2.91 -0.02 0.82 16 37 H 0.19 0.52 8.06 -2.91 -0.02 0.49 16 38 H 0.16 2.76 7.64 -2.91 -0.02 2.74 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.12 2.26 5.12 -2.39 -0.01 2.25 16 41 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.10 1.98 7.02 -2.39 -0.02 1.97 16 43 H 0.08 2.32 8.07 -2.39 -0.02 2.30 16 44 H 0.08 2.05 6.08 -2.39 -0.01 2.04 16 45 H 0.06 2.79 7.13 -2.39 -0.02 2.78 16 46 H 0.02 1.10 6.85 -2.38 -0.02 1.08 16 47 H 0.27 16.14 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -91.30 389.95 5.61 -85.69 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.93 Total: 13.52 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 6.56 Total: 21.84 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -3.87 Total: -105.22 kcal Atomic # 8 Polarization: -62.95 SS G_CDS: 0.11 Total: -62.85 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -91.30 5.61 -85.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762046839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.195 kcal (2) G-P(sol) polarization free energy of solvation -91.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds