Wall clock time and date at job start Tue Mar 31 2020 18:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46819 * 2 1 4 4 C 1.50692 * 109.47077 * 120.00011 * 2 1 3 5 5 C 1.38359 * 119.45791 * 275.00070 * 4 2 1 6 6 C 1.38343 * 119.31204 * 179.97438 * 5 4 2 7 7 C 1.40077 * 118.28402 * 0.02562 * 6 5 4 8 8 C 1.47714 * 120.56505 * 179.72468 * 7 6 5 9 9 O 1.21472 * 120.00106 * 359.97438 * 8 7 6 10 10 O 1.34714 * 120.00058 * 179.97438 * 8 7 6 11 11 C 1.45197 * 117.00150 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.47198 * 30.00373 * 11 10 8 13 13 C 1.52998 * 109.47228 * 270.00333 * 11 10 8 14 14 C 1.50704 * 109.47132 * 150.00358 * 11 10 8 15 15 O 1.21279 * 119.99585 * 8.56687 * 14 11 10 16 16 N 1.34780 * 119.99886 * 188.56931 * 14 11 10 17 17 C 1.46496 * 119.99930 * 4.58099 * 16 14 11 18 18 C 1.46496 * 119.99606 * 184.58079 * 16 14 11 19 19 C 1.50704 * 109.47076 * 90.00392 * 18 16 14 20 20 H 1.07998 * 119.99787 * 359.97438 * 19 18 16 21 21 C 1.37870 * 120.00092 * 179.97438 * 19 18 16 22 22 N 1.31512 * 120.00362 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00076 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47020 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47657 * 119.99859 * 23 21 19 26 26 H 1.48500 * 109.46958 * 239.99714 * 23 21 19 27 27 C 1.39577 * 118.86811 * 359.97438 * 7 6 5 28 28 N 1.31677 * 120.56182 * 359.97438 * 27 7 6 29 29 H 1.09003 * 109.47183 * 300.00341 * 1 2 3 30 30 H 1.09002 * 109.46788 * 59.99361 * 1 2 3 31 31 H 1.08995 * 109.47598 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47166 * 240.00110 * 2 1 3 33 33 H 1.09009 * 109.46571 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47582 * 299.99642 * 3 2 1 35 35 H 1.09005 * 109.47031 * 60.00453 * 3 2 1 36 36 H 1.08005 * 120.34746 * 0.02562 * 5 4 2 37 37 H 1.07999 * 120.85833 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47094 * 307.15068 * 13 11 10 39 39 H 1.08997 * 109.47357 * 67.14962 * 13 11 10 40 40 H 1.09007 * 109.47465 * 187.15115 * 13 11 10 41 41 H 1.09010 * 109.47299 * 86.12079 * 17 16 14 42 42 H 1.09001 * 109.47296 * 206.11431 * 17 16 14 43 43 H 1.09002 * 109.47447 * 326.12050 * 17 16 14 44 44 H 1.09001 * 109.47188 * 209.99933 * 18 16 14 45 45 H 1.08993 * 109.47625 * 330.00261 * 18 16 14 46 46 H 0.96999 * 120.00508 * 180.02562 * 22 21 19 47 47 H 1.08000 * 119.71504 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.1601 -0.0093 2.4163 6 6 2.6210 -0.6646 3.5442 7 6 2.9428 -2.0237 3.4372 8 6 3.4450 -2.7711 4.6081 9 8 3.5827 -2.2073 5.6752 10 8 3.7505 -4.0781 4.4926 11 6 4.2391 -4.7487 5.6841 12 1 3.8054 -4.2809 6.5680 13 6 5.7638 -4.6362 5.7437 14 6 3.8440 -6.2023 5.6401 15 8 3.3517 -6.6666 4.6337 16 7 4.0378 -6.9863 6.7192 17 6 4.5386 -6.4044 7.9669 18 6 3.7476 -8.4203 6.6443 19 6 4.9826 -9.1601 6.1988 20 1 5.8925 -8.6164 5.9918 21 6 4.9509 -10.5310 6.0556 22 7 3.8431 -11.1932 6.3082 23 14 6.4820 -11.4481 5.5041 24 1 7.5872 -10.4805 5.2866 25 1 6.8776 -12.4252 6.5500 26 1 6.1982 -12.1678 4.2365 27 6 2.7856 -2.6583 2.2041 28 7 2.3420 -1.9909 1.1593 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8901 36 1 1.9019 1.0385 2.4614 37 1 2.7308 -0.1415 4.4827 38 1 6.1911 -4.9884 4.8048 39 1 6.0454 -3.5954 5.9032 40 1 6.1412 -5.2447 6.5656 41 1 3.7019 -6.0183 8.5493 42 1 5.0587 -7.1704 8.5420 43 1 5.2276 -5.5914 7.7379 44 1 3.4425 -8.7810 7.6266 45 1 2.9436 -8.5914 5.9286 46 1 3.8209 -12.1577 6.2078 47 1 3.0292 -3.7060 2.1063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772392530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:09 Heat of formation + Delta-G solvation = -85.213364 kcal Electronic energy + Delta-G solvation = -28310.833514 eV Core-core repulsion = 24266.110562 eV Total energy + Delta-G solvation = -4044.722952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14568 -40.23559 -38.89735 -36.51372 -35.95309 -34.93636 -32.96925 -32.85647 -31.80352 -30.65050 -27.75068 -27.63446 -26.22062 -25.63274 -24.32462 -23.77605 -22.73440 -21.55746 -20.56595 -18.93194 -18.49353 -17.23480 -16.64727 -16.57038 -16.38787 -16.07811 -15.87995 -15.32350 -14.98592 -14.78346 -14.59465 -14.33753 -14.25702 -13.74652 -13.53855 -13.32724 -13.15356 -13.00738 -12.84602 -12.51468 -12.46142 -12.19072 -12.09325 -11.70133 -11.66744 -11.60001 -11.39008 -11.37615 -11.22969 -10.91676 -10.81832 -10.75631 -10.59092 -10.27492 -10.19090 -9.75714 -9.65384 -9.38986 -8.94259 -8.47218 -7.74090 -6.07836 -4.13133 0.22116 0.89226 2.30426 2.36370 3.21185 3.28111 3.36182 3.39942 3.46096 3.71216 3.87703 4.22901 4.40981 4.47704 4.52336 4.62137 4.66074 4.71862 4.77903 4.81951 4.98018 5.07489 5.09990 5.19686 5.26839 5.33361 5.36304 5.41670 5.46078 5.51243 5.63689 5.66500 5.68656 5.79354 5.82215 5.84915 5.88979 6.04898 6.23037 6.25537 6.31391 6.96436 7.38049 7.44258 7.53818 7.63451 7.88146 8.17676 8.26800 8.81657 8.96745 9.52123 11.00311 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019323 B = 0.002265 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.699506 B =12359.840671 C =13087.558209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C -0.149 4.149 4 C 0.166 3.834 5 C -0.186 4.186 6 C -0.009 4.009 7 C -0.182 4.182 8 C 0.514 3.486 9 O -0.508 6.508 10 O -0.319 6.319 11 C 0.073 3.927 12 H 0.105 0.895 13 C -0.171 4.171 14 C 0.509 3.491 15 O -0.520 6.520 16 N -0.595 5.595 17 C 0.067 3.933 18 C 0.245 3.755 19 C -0.528 4.528 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 C 0.170 3.830 28 N -0.488 5.488 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.036 0.964 45 H 0.046 0.954 46 H 0.263 0.737 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 26.077 -6.212 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 C -0.206 4.206 4 C 0.029 3.971 5 C -0.205 4.205 6 C -0.034 4.034 7 C -0.185 4.185 8 C 0.358 3.642 9 O -0.397 6.397 10 O -0.234 6.234 11 C 0.014 3.986 12 H 0.123 0.877 13 C -0.228 4.228 14 C 0.294 3.706 15 O -0.395 6.395 16 N -0.329 5.329 17 C -0.077 4.077 18 C 0.127 3.873 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.208 1.208 27 C 0.012 3.988 28 N -0.197 5.197 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.999 25.306 -7.198 26.481 hybrid contribution 1.033 -0.232 0.891 1.384 sum -1.966 25.074 -6.308 25.930 Atomic orbital electron populations 1.21811 0.93125 1.02729 1.02327 1.20161 0.96544 0.95521 0.94906 1.21947 1.01500 0.94624 1.02546 1.21625 0.90821 0.89856 0.94805 1.21950 1.03617 1.02098 0.92844 1.21722 0.90323 0.91976 0.99415 1.20151 1.09043 0.95105 0.94244 1.20928 0.74268 0.81158 0.87797 1.90808 1.50584 1.69419 1.28908 1.86654 1.75257 1.22550 1.38965 1.22686 0.96315 0.92415 0.87164 0.87749 1.22312 0.92290 1.03343 1.04881 1.19735 0.80290 0.86173 0.84442 1.90702 1.43082 1.74682 1.31049 1.48056 1.63900 1.11020 1.09912 1.21984 0.98822 0.99556 0.87325 1.19375 0.97551 0.72101 0.98290 1.21454 0.97265 0.91916 1.46087 0.92282 1.24943 0.96465 0.97484 0.95235 1.69938 1.26314 1.08109 1.48848 0.86426 0.82856 0.79654 0.78387 1.19775 1.20951 1.20823 1.23415 0.88568 1.00590 0.86196 1.67675 1.12184 1.08328 1.31492 0.92374 0.91574 0.91987 0.88727 0.92197 0.91544 0.92016 0.83666 0.83300 0.90535 0.91233 0.88841 0.93405 0.90090 0.91667 0.94615 0.93562 0.92689 0.80482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.18 37.16 0.34 -0.54 16 2 C -0.05 -0.36 3.23 -91.77 -0.30 -0.66 16 3 C -0.15 -0.72 8.61 37.16 0.32 -0.40 16 4 C 0.17 1.59 5.79 -82.51 -0.48 1.11 16 5 C -0.19 -1.53 9.16 -39.50 -0.36 -1.90 16 6 C -0.01 -0.09 9.72 -38.85 -0.38 -0.46 16 7 C -0.18 -2.27 5.89 -104.84 -0.62 -2.88 16 8 C 0.51 7.57 7.88 34.60 0.27 7.84 16 9 O -0.51 -7.92 15.68 -19.24 -0.30 -8.22 16 10 O -0.32 -5.32 8.71 -47.17 -0.41 -5.73 16 11 C 0.07 1.20 2.17 -27.88 -0.06 1.14 16 12 H 0.10 1.59 6.73 -51.93 -0.35 1.24 16 13 C -0.17 -2.39 9.14 37.16 0.34 -2.05 16 14 C 0.51 10.85 7.03 -10.98 -0.08 10.77 16 15 O -0.52 -13.34 16.08 -13.95 -0.22 -13.57 16 16 N -0.60 -12.56 2.86 -182.95 -0.52 -13.09 16 17 C 0.07 1.04 9.80 59.84 0.59 1.62 16 18 C 0.25 6.36 5.18 -5.19 -0.03 6.34 16 19 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 20 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 23 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 27 C 0.17 2.14 10.79 -17.12 -0.18 1.96 16 28 N -0.49 -5.89 10.25 -9.13 -0.09 -5.99 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.24 6.48 -51.93 -0.34 -0.09 16 36 H 0.15 0.77 6.29 -52.48 -0.33 0.44 16 37 H 0.15 1.28 7.74 -52.49 -0.41 0.87 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.23 5.46 -51.92 -0.28 0.94 16 41 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 42 H 0.08 1.26 8.04 -51.93 -0.42 0.85 16 43 H 0.07 0.84 4.31 -51.93 -0.22 0.62 16 44 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 45 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.18 2.26 7.62 -52.49 -0.40 1.86 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -34.51 393.63 -7.84 -42.36 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.90 Total: -1.16 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -1.04 Total: 8.45 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.12 Total: -44.70 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.94 Total: -27.52 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.51 -7.84 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772392530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.857 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds