Wall clock time and date at job start Tue Mar 31 2020 18:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46819 * 2 1 4 4 C 1.50692 * 109.47077 * 120.00011 * 2 1 3 5 5 C 1.38359 * 119.45791 * 275.00070 * 4 2 1 6 6 C 1.38343 * 119.31204 * 179.97438 * 5 4 2 7 7 C 1.40077 * 118.28402 * 0.02562 * 6 5 4 8 8 C 1.47714 * 120.56505 * 179.72468 * 7 6 5 9 9 O 1.21472 * 120.00106 * 359.97438 * 8 7 6 10 10 O 1.34714 * 120.00058 * 179.97438 * 8 7 6 11 11 C 1.45197 * 117.00150 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.47198 * 30.00373 * 11 10 8 13 13 C 1.52998 * 109.47228 * 270.00333 * 11 10 8 14 14 C 1.50704 * 109.47132 * 150.00358 * 11 10 8 15 15 O 1.21279 * 119.99585 * 8.56687 * 14 11 10 16 16 N 1.34780 * 119.99886 * 188.56931 * 14 11 10 17 17 C 1.46496 * 119.99930 * 4.58099 * 16 14 11 18 18 C 1.46496 * 119.99606 * 184.58079 * 16 14 11 19 19 C 1.50704 * 109.47076 * 90.00392 * 18 16 14 20 20 H 1.07998 * 119.99787 * 359.97438 * 19 18 16 21 21 C 1.37870 * 120.00092 * 179.97438 * 19 18 16 22 22 N 1.31512 * 120.00362 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00076 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47020 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47657 * 119.99859 * 23 21 19 26 26 H 1.48500 * 109.46958 * 239.99714 * 23 21 19 27 27 C 1.39577 * 118.86811 * 359.97438 * 7 6 5 28 28 N 1.31677 * 120.56182 * 359.97438 * 27 7 6 29 29 H 1.09003 * 109.47183 * 300.00341 * 1 2 3 30 30 H 1.09002 * 109.46788 * 59.99361 * 1 2 3 31 31 H 1.08995 * 109.47598 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47166 * 240.00110 * 2 1 3 33 33 H 1.09009 * 109.46571 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47582 * 299.99642 * 3 2 1 35 35 H 1.09005 * 109.47031 * 60.00453 * 3 2 1 36 36 H 1.08005 * 120.34746 * 0.02562 * 5 4 2 37 37 H 1.07999 * 120.85833 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47094 * 307.15068 * 13 11 10 39 39 H 1.08997 * 109.47357 * 67.14962 * 13 11 10 40 40 H 1.09007 * 109.47465 * 187.15115 * 13 11 10 41 41 H 1.09010 * 109.47299 * 86.12079 * 17 16 14 42 42 H 1.09001 * 109.47296 * 206.11431 * 17 16 14 43 43 H 1.09002 * 109.47447 * 326.12050 * 17 16 14 44 44 H 1.09001 * 109.47188 * 209.99933 * 18 16 14 45 45 H 1.08993 * 109.47625 * 330.00261 * 18 16 14 46 46 H 0.96999 * 120.00508 * 180.02562 * 22 21 19 47 47 H 1.08000 * 119.71504 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.1601 -0.0093 2.4163 6 6 2.6210 -0.6646 3.5442 7 6 2.9428 -2.0237 3.4372 8 6 3.4450 -2.7711 4.6081 9 8 3.5827 -2.2073 5.6752 10 8 3.7505 -4.0781 4.4926 11 6 4.2391 -4.7487 5.6841 12 1 3.8054 -4.2809 6.5680 13 6 5.7638 -4.6362 5.7437 14 6 3.8440 -6.2023 5.6401 15 8 3.3517 -6.6666 4.6337 16 7 4.0378 -6.9863 6.7192 17 6 4.5386 -6.4044 7.9669 18 6 3.7476 -8.4203 6.6443 19 6 4.9826 -9.1601 6.1988 20 1 5.8925 -8.6164 5.9918 21 6 4.9509 -10.5310 6.0556 22 7 3.8431 -11.1932 6.3082 23 14 6.4820 -11.4481 5.5041 24 1 7.5872 -10.4805 5.2866 25 1 6.8776 -12.4252 6.5500 26 1 6.1982 -12.1678 4.2365 27 6 2.7856 -2.6583 2.2041 28 7 2.3420 -1.9909 1.1593 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8901 36 1 1.9019 1.0385 2.4614 37 1 2.7308 -0.1415 4.4827 38 1 6.1911 -4.9884 4.8048 39 1 6.0454 -3.5954 5.9032 40 1 6.1412 -5.2447 6.5656 41 1 3.7019 -6.0183 8.5493 42 1 5.0587 -7.1704 8.5420 43 1 5.2276 -5.5914 7.7379 44 1 3.4425 -8.7810 7.6266 45 1 2.9436 -8.5914 5.9286 46 1 3.8209 -12.1577 6.2078 47 1 3.0292 -3.7060 2.1063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772392530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:08 Heat of formation + Delta-G solvation = -105.585778 kcal Electronic energy + Delta-G solvation = -28311.716928 eV Core-core repulsion = 24266.110562 eV Total energy + Delta-G solvation = -4045.606366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.19819 -41.33123 -40.41355 -37.76103 -36.72634 -36.59455 -34.90080 -33.76955 -33.17503 -31.52925 -29.64960 -28.05250 -27.68782 -26.61306 -25.82585 -24.75222 -24.17920 -22.63735 -21.36090 -20.49363 -19.60226 -18.70344 -18.43692 -17.73060 -17.51959 -17.29410 -17.04210 -16.81526 -16.30167 -16.19889 -15.70329 -15.41411 -15.00377 -14.84798 -14.78317 -14.30564 -14.24794 -14.16138 -13.84971 -13.75200 -13.63047 -13.60878 -13.32614 -13.08500 -12.89026 -12.87707 -12.65497 -12.39131 -12.27046 -12.21146 -12.09211 -12.06826 -12.00147 -11.77232 -11.68050 -11.09718 -10.66528 -10.65489 -10.58842 -10.19707 -9.53316 -8.24045 -6.38741 -0.66968 0.09734 1.12331 1.28607 1.36876 1.39509 1.50570 1.57719 2.27984 2.41339 2.60722 2.99862 3.06254 3.35471 3.46074 3.55536 3.69424 3.72893 3.79898 3.85436 4.05946 4.14420 4.21728 4.25183 4.49071 4.50619 4.57096 4.64009 4.65210 4.78781 4.83220 4.86237 4.87198 4.93145 4.98082 5.02544 5.11237 5.14936 5.20028 5.21558 5.35499 5.42091 5.47704 5.50682 5.77082 6.02107 6.39002 6.58224 6.70477 6.76642 7.17894 7.34643 8.83749 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019323 B = 0.002265 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.699506 B =12359.840671 C =13087.558209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 C -0.145 4.145 4 C 0.161 3.839 5 C -0.170 4.170 6 C -0.005 4.005 7 C -0.198 4.198 8 C 0.517 3.483 9 O -0.517 6.517 10 O -0.338 6.338 11 C 0.082 3.918 12 H 0.125 0.875 13 C -0.165 4.165 14 C 0.500 3.500 15 O -0.578 6.578 16 N -0.599 5.599 17 C 0.060 3.940 18 C 0.258 3.742 19 C -0.542 4.542 20 H 0.059 0.941 21 C 0.006 3.994 22 N -0.928 5.928 23 Si 0.969 3.031 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.284 1.284 27 C 0.158 3.842 28 N -0.513 5.513 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.184 0.816 37 H 0.167 0.833 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.031 0.969 45 H -0.001 1.001 46 H 0.267 0.733 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 29.238 -5.777 29.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C -0.202 4.202 4 C 0.024 3.976 5 C -0.189 4.189 6 C -0.030 4.030 7 C -0.202 4.202 8 C 0.362 3.638 9 O -0.407 6.407 10 O -0.254 6.254 11 C 0.024 3.976 12 H 0.142 0.858 13 C -0.221 4.221 14 C 0.287 3.713 15 O -0.457 6.457 16 N -0.331 5.331 17 C -0.082 4.082 18 C 0.138 3.862 19 C -0.580 4.580 20 H 0.077 0.923 21 C -0.193 4.193 22 N -0.568 5.568 23 Si 0.794 3.206 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.210 1.210 27 C 0.000 4.000 28 N -0.222 5.222 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.202 0.798 37 H 0.185 0.815 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.049 0.951 45 H 0.017 0.983 46 H 0.076 0.924 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.834 28.507 -6.720 29.345 hybrid contribution 0.575 -1.133 0.707 1.454 sum -1.259 27.373 -6.013 28.054 Atomic orbital electron populations 1.21808 0.92387 1.01839 1.03715 1.20269 0.97024 0.96626 0.93222 1.21945 1.01267 0.92930 1.04072 1.22215 0.89771 0.89123 0.96512 1.22328 1.01632 1.03567 0.91405 1.21989 0.89549 0.90760 1.00733 1.20127 1.10674 0.96196 0.93188 1.21251 0.73753 0.80336 0.88417 1.90783 1.51285 1.69314 1.29307 1.86667 1.75727 1.23869 1.39116 1.22576 0.98092 0.88901 0.88001 0.85779 1.22317 0.89865 1.05189 1.04770 1.20621 0.79041 0.88237 0.83415 1.90665 1.45598 1.76293 1.33182 1.48038 1.63699 1.09371 1.12016 1.22317 1.00466 1.00298 0.85078 1.18870 0.95688 0.75284 0.96397 1.21720 0.97643 0.92504 1.46180 0.92320 1.25880 0.99747 0.98496 0.95146 1.70058 1.28471 1.08578 1.49696 0.85340 0.78947 0.78404 0.77955 1.18844 1.19429 1.20952 1.23219 0.89632 1.00294 0.86879 1.67670 1.13068 1.09923 1.31504 0.91396 0.89793 0.94021 0.89746 0.92564 0.90140 0.90430 0.79845 0.81545 0.91637 0.88603 0.87753 0.90876 0.90116 0.88399 0.95127 0.98262 0.92374 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.18 71.98 0.66 -0.81 16 2 C -0.05 -0.63 3.23 -11.54 -0.04 -0.67 16 3 C -0.14 -0.95 8.61 71.98 0.62 -0.33 16 4 C 0.16 2.86 5.79 42.57 0.25 3.11 16 5 C -0.17 -2.35 9.16 22.32 0.20 -2.14 16 6 C -0.01 -0.09 9.72 22.74 0.22 0.13 16 7 C -0.20 -4.90 5.89 -20.00 -0.12 -5.01 16 8 C 0.52 15.04 7.88 70.33 0.55 15.59 16 9 O -0.52 -15.29 15.68 19.93 0.31 -14.98 16 10 O -0.34 -11.49 8.71 -49.89 -0.43 -11.93 16 11 C 0.08 2.69 2.17 29.85 0.06 2.75 16 12 H 0.12 3.55 6.73 -2.38 -0.02 3.53 16 13 C -0.16 -4.31 9.14 71.98 0.66 -3.65 16 14 C 0.50 21.90 7.03 87.66 0.62 22.52 16 15 O -0.58 -31.47 16.08 15.62 0.25 -31.22 16 16 N -0.60 -25.68 2.86 -851.13 -2.43 -28.11 16 17 C 0.06 1.76 9.80 127.77 1.25 3.02 16 18 C 0.26 13.98 5.18 85.64 0.44 14.42 16 19 C -0.54 -30.95 9.39 25.60 0.24 -30.71 16 20 H 0.06 3.28 7.81 -2.91 -0.02 3.25 16 21 C 0.01 0.36 5.46 84.65 0.46 0.83 16 22 N -0.93 -56.18 13.29 21.44 0.28 -55.89 16 23 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 24 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 27 C 0.16 4.16 10.79 85.04 0.92 5.07 16 28 N -0.51 -12.62 10.25 -182.78 -1.87 -14.49 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.08 0.27 6.48 -2.38 -0.02 0.25 16 36 H 0.18 1.09 6.29 -2.91 -0.02 1.07 16 37 H 0.17 2.36 7.74 -2.91 -0.02 2.34 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.10 2.47 5.46 -2.38 -0.01 2.46 16 41 H 0.07 1.81 8.14 -2.38 -0.02 1.80 16 42 H 0.08 2.40 8.04 -2.39 -0.02 2.39 16 43 H 0.10 2.24 4.31 -2.39 -0.01 2.23 16 44 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 45 H 0.00 -0.05 7.36 -2.39 -0.02 -0.07 16 46 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 47 H 0.16 4.58 7.62 -2.91 -0.02 4.56 16 Total: -1.00 -78.96 393.63 6.12 -72.84 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.98 Total: 12.90 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 7.01 Total: 24.13 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -4.02 Total: -98.50 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: 0.13 Total: -58.12 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -78.96 6.12 -72.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772392530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.744 kcal (2) G-P(sol) polarization free energy of solvation -78.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds