Wall clock time and date at job start Tue Mar 31 2020 18:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47120 * 2 1 4 4 C 1.50700 * 109.46880 * 119.99908 * 2 1 3 5 5 C 1.38363 * 119.45582 * 274.97453 * 4 2 1 6 6 C 1.38342 * 119.30566 * 180.02562 * 5 4 2 7 7 C 1.40076 * 118.28563 * 0.02562 * 6 5 4 8 8 C 1.47728 * 120.56197 * 179.97438 * 7 6 5 9 9 O 1.21468 * 119.99812 * 0.02562 * 8 7 6 10 10 O 1.34707 * 119.99737 * 179.97438 * 8 7 6 11 11 C 1.45196 * 116.99798 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47256 * 329.99894 * 11 10 8 13 13 C 1.53001 * 109.47421 * 90.00191 * 11 10 8 14 14 C 1.50705 * 109.47098 * 210.00249 * 11 10 8 15 15 O 1.21277 * 119.99882 * 359.97438 * 14 11 10 16 16 N 1.34775 * 120.00188 * 179.97438 * 14 11 10 17 17 C 1.46503 * 119.99670 * 359.97438 * 16 14 11 18 18 C 1.46495 * 120.00083 * 179.97438 * 16 14 11 19 19 C 1.50699 * 109.47298 * 90.00420 * 18 16 14 20 20 H 1.07998 * 119.99791 * 359.97438 * 19 18 16 21 21 C 1.37878 * 119.99993 * 180.02562 * 19 18 16 22 22 N 1.31511 * 119.99954 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99851 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46996 * 59.99519 * 23 21 19 25 25 H 1.48498 * 109.46909 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47209 * 299.99354 * 23 21 19 27 27 C 1.39571 * 118.87079 * 359.97438 * 7 6 5 28 28 N 1.31678 * 120.56151 * 0.02562 * 27 7 6 29 29 H 1.08996 * 109.46723 * 300.00279 * 1 2 3 30 30 H 1.09001 * 109.46580 * 59.99675 * 1 2 3 31 31 H 1.08998 * 109.47138 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47170 * 239.99905 * 2 1 3 33 33 H 1.08998 * 109.47208 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00124 * 3 2 1 35 35 H 1.09000 * 109.47176 * 59.99909 * 3 2 1 36 36 H 1.07991 * 120.34557 * 0.02562 * 5 4 2 37 37 H 1.08004 * 120.85304 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.47148 * 59.99637 * 13 11 10 39 39 H 1.08995 * 109.47528 * 179.97438 * 13 11 10 40 40 H 1.09002 * 109.46932 * 300.00186 * 13 11 10 41 41 H 1.09000 * 109.47388 * 90.00392 * 17 16 14 42 42 H 1.09002 * 109.47016 * 209.99399 * 17 16 14 43 43 H 1.09000 * 109.47218 * 329.99781 * 17 16 14 44 44 H 1.09012 * 109.47083 * 209.99895 * 18 16 14 45 45 H 1.08995 * 109.47378 * 329.99791 * 18 16 14 46 46 H 0.97001 * 119.99976 * 180.02562 * 22 21 19 47 47 H 1.08004 * 119.71619 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1606 -0.0091 2.4163 6 6 2.6225 -0.6642 3.5439 7 6 2.9447 -2.0232 3.4367 8 6 3.4428 -2.7717 4.6089 9 8 3.5757 -2.2091 5.6772 10 8 3.7487 -4.0785 4.4932 11 6 4.2320 -4.7504 5.6861 12 1 4.7596 -4.0354 6.3174 13 6 3.0471 -5.3349 6.4577 14 6 5.1714 -5.8609 5.2915 15 8 5.4096 -6.0660 4.1202 16 7 5.7467 -6.6260 6.2402 17 6 5.4592 -6.3778 7.6552 18 6 6.6593 -7.7057 5.8566 19 6 8.0675 -7.1731 5.7892 20 1 8.2629 -6.1341 6.0097 21 6 9.1061 -8.0121 5.4451 22 7 8.8680 -9.2772 5.1761 23 14 10.8514 -7.3517 5.3609 24 1 11.2445 -6.8208 6.6909 25 1 11.7766 -8.4463 4.9721 26 1 10.9207 -6.2631 4.3532 27 6 2.7870 -2.6580 2.2038 28 7 2.3434 -1.9905 1.1590 29 1 -0.3632 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9029 1.0386 2.4612 37 1 2.7319 -0.1412 4.4825 38 1 2.5195 -6.0499 5.8265 39 1 3.4099 -5.8397 7.3530 40 1 2.3677 -4.5317 6.7431 41 1 4.5959 -6.9693 7.9598 42 1 6.3234 -6.6602 8.2565 43 1 5.2446 -5.3193 7.8021 44 1 6.6082 -8.5048 6.5964 45 1 6.3712 -8.0955 4.8804 46 1 9.5988 -9.8675 4.9344 47 1 3.0309 -3.7056 2.1059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772392534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:11 Heat of formation + Delta-G solvation = -85.146606 kcal Electronic energy + Delta-G solvation = -28333.450335 eV Core-core repulsion = 24288.730278 eV Total energy + Delta-G solvation = -4044.720057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.13452 -40.23180 -38.90872 -36.50085 -35.94394 -34.97643 -32.98798 -32.86720 -31.76505 -30.64226 -27.69556 -27.62946 -26.30881 -25.61145 -24.32650 -23.76916 -22.71582 -21.55313 -20.56208 -18.95203 -18.49732 -17.23496 -16.67547 -16.49344 -16.37920 -16.10407 -15.86383 -15.39639 -14.99869 -14.71706 -14.60850 -14.34595 -14.12029 -13.66848 -13.54701 -13.34436 -13.22482 -13.05932 -12.84258 -12.50878 -12.42670 -12.22161 -12.11992 -11.70345 -11.67588 -11.59780 -11.41057 -11.37834 -11.16549 -10.94869 -10.82296 -10.74583 -10.57908 -10.26089 -10.18465 -9.74811 -9.68520 -9.37685 -8.94209 -8.45726 -7.75464 -6.07024 -4.12106 0.23591 0.90523 2.30844 2.38132 3.23008 3.31343 3.35656 3.39777 3.47539 3.71786 3.86844 4.24007 4.42279 4.48564 4.53497 4.62730 4.66863 4.72818 4.78467 4.81438 4.95379 5.06536 5.11088 5.19616 5.27563 5.33584 5.37064 5.42452 5.47928 5.53953 5.61338 5.63213 5.68941 5.75537 5.81473 5.82345 5.89873 5.96979 6.19816 6.24233 6.31686 6.95703 7.37006 7.43595 7.54846 7.64608 7.88692 8.18476 8.26274 8.82107 8.96926 9.52940 11.01066 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.002378 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.980680 B =11769.552697 C =12614.315501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 C -0.149 4.149 4 C 0.166 3.834 5 C -0.185 4.185 6 C -0.009 4.009 7 C -0.181 4.181 8 C 0.515 3.485 9 O -0.507 6.507 10 O -0.319 6.319 11 C 0.072 3.928 12 H 0.107 0.893 13 C -0.176 4.176 14 C 0.509 3.491 15 O -0.518 6.518 16 N -0.595 5.595 17 C 0.075 3.925 18 C 0.247 3.753 19 C -0.530 4.530 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 C 0.170 3.830 28 N -0.489 5.489 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.036 0.964 45 H 0.046 0.954 46 H 0.265 0.735 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.247 19.043 -3.005 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C -0.207 4.207 4 C 0.029 3.971 5 C -0.205 4.205 6 C -0.034 4.034 7 C -0.185 4.185 8 C 0.359 3.641 9 O -0.397 6.397 10 O -0.234 6.234 11 C 0.013 3.987 12 H 0.125 0.875 13 C -0.233 4.233 14 C 0.293 3.707 15 O -0.394 6.394 16 N -0.329 5.329 17 C -0.068 4.068 18 C 0.129 3.871 19 C -0.569 4.569 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.532 5.532 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 C 0.012 3.988 28 N -0.197 5.197 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -18.053 18.418 -4.149 26.122 hybrid contribution 1.265 0.725 1.113 1.834 sum -16.788 19.143 -3.036 25.642 Atomic orbital electron populations 1.21805 0.93176 1.02619 1.02310 1.20162 0.96482 0.95566 0.94931 1.21946 1.01608 0.94588 1.02519 1.21622 0.90865 0.89866 0.94776 1.21948 1.03623 1.02060 0.92856 1.21725 0.90269 0.91971 0.99474 1.20149 1.08924 0.95141 0.94259 1.20916 0.74412 0.80980 0.87796 1.90810 1.50271 1.69603 1.28971 1.86629 1.75047 1.22597 1.39169 1.22664 0.96337 0.94603 0.85059 0.87492 1.22410 0.97277 1.02265 1.01333 1.19739 0.81409 0.82950 0.86627 1.90710 1.61887 1.69106 1.17681 1.48058 1.45557 1.34332 1.04931 1.21893 1.01493 1.00075 0.83389 1.19353 0.86856 0.83560 0.97364 1.21380 0.91704 0.96300 1.47484 0.92487 1.24929 0.99344 0.94803 0.94952 1.69916 1.32589 1.04261 1.46484 0.86545 0.83728 0.78551 0.78532 1.20223 1.21113 1.20147 1.23396 0.88539 1.00679 0.86153 1.67670 1.12255 1.08407 1.31358 0.92398 0.91588 0.92062 0.88706 0.92131 0.91543 0.92025 0.83665 0.83294 0.90891 0.88756 0.91339 0.92975 0.90277 0.92284 0.94569 0.93609 0.92582 0.80526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.18 37.16 0.34 -0.50 16 2 C -0.05 -0.37 3.23 -91.77 -0.30 -0.67 16 3 C -0.15 -0.78 8.61 37.16 0.32 -0.46 16 4 C 0.17 1.62 5.79 -82.50 -0.48 1.14 16 5 C -0.19 -1.58 9.16 -39.50 -0.36 -1.94 16 6 C -0.01 -0.09 9.72 -38.85 -0.38 -0.47 16 7 C -0.18 -2.31 5.89 -104.83 -0.62 -2.92 16 8 C 0.52 7.75 7.88 34.61 0.27 8.02 16 9 O -0.51 -8.14 15.68 -19.24 -0.30 -8.44 16 10 O -0.32 -5.36 8.69 -47.19 -0.41 -5.77 16 11 C 0.07 1.19 2.18 -27.88 -0.06 1.13 16 12 H 0.11 1.71 6.42 -51.93 -0.33 1.37 16 13 C -0.18 -2.25 9.19 37.16 0.34 -1.91 16 14 C 0.51 10.83 7.15 -10.98 -0.08 10.75 16 15 O -0.52 -13.38 16.08 -14.10 -0.23 -13.60 16 16 N -0.60 -12.50 2.86 -182.95 -0.52 -13.03 16 17 C 0.08 1.15 8.80 59.85 0.53 1.68 16 18 C 0.25 6.40 5.16 -5.20 -0.03 6.38 16 19 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 20 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 23 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.17 2.17 10.79 -17.12 -0.18 1.98 16 28 N -0.49 -5.97 10.25 -9.12 -0.09 -6.06 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.26 6.48 -51.93 -0.34 -0.08 16 36 H 0.15 0.81 6.29 -52.49 -0.33 0.48 16 37 H 0.15 1.33 7.74 -52.48 -0.41 0.92 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.09 1.06 4.53 -51.93 -0.24 0.82 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.66 6.95 -51.93 -0.36 0.29 16 42 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 43 H 0.06 0.76 6.01 -51.93 -0.31 0.45 16 44 H 0.04 0.93 8.07 -51.92 -0.42 0.51 16 45 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.18 2.25 7.62 -52.48 -0.40 1.85 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -34.89 392.15 -7.90 -42.78 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.86 Total: -1.55 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -1.10 Total: 8.55 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.12 Total: -44.80 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.94 Total: -27.81 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.89 -7.90 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772392534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.366 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds