Wall clock time and date at job start Tue Mar 31 2020 18:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47120 * 2 1 4 4 C 1.50700 * 109.46880 * 119.99908 * 2 1 3 5 5 C 1.38363 * 119.45582 * 274.97453 * 4 2 1 6 6 C 1.38342 * 119.30566 * 180.02562 * 5 4 2 7 7 C 1.40076 * 118.28563 * 0.02562 * 6 5 4 8 8 C 1.47728 * 120.56197 * 179.97438 * 7 6 5 9 9 O 1.21468 * 119.99812 * 0.02562 * 8 7 6 10 10 O 1.34707 * 119.99737 * 179.97438 * 8 7 6 11 11 C 1.45196 * 116.99798 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47256 * 329.99894 * 11 10 8 13 13 C 1.53001 * 109.47421 * 90.00191 * 11 10 8 14 14 C 1.50705 * 109.47098 * 210.00249 * 11 10 8 15 15 O 1.21277 * 119.99882 * 359.97438 * 14 11 10 16 16 N 1.34775 * 120.00188 * 179.97438 * 14 11 10 17 17 C 1.46503 * 119.99670 * 359.97438 * 16 14 11 18 18 C 1.46495 * 120.00083 * 179.97438 * 16 14 11 19 19 C 1.50699 * 109.47298 * 90.00420 * 18 16 14 20 20 H 1.07998 * 119.99791 * 359.97438 * 19 18 16 21 21 C 1.37878 * 119.99993 * 180.02562 * 19 18 16 22 22 N 1.31511 * 119.99954 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99851 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46996 * 59.99519 * 23 21 19 25 25 H 1.48498 * 109.46909 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47209 * 299.99354 * 23 21 19 27 27 C 1.39571 * 118.87079 * 359.97438 * 7 6 5 28 28 N 1.31678 * 120.56151 * 0.02562 * 27 7 6 29 29 H 1.08996 * 109.46723 * 300.00279 * 1 2 3 30 30 H 1.09001 * 109.46580 * 59.99675 * 1 2 3 31 31 H 1.08998 * 109.47138 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47170 * 239.99905 * 2 1 3 33 33 H 1.08998 * 109.47208 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00124 * 3 2 1 35 35 H 1.09000 * 109.47176 * 59.99909 * 3 2 1 36 36 H 1.07991 * 120.34557 * 0.02562 * 5 4 2 37 37 H 1.08004 * 120.85304 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.47148 * 59.99637 * 13 11 10 39 39 H 1.08995 * 109.47528 * 179.97438 * 13 11 10 40 40 H 1.09002 * 109.46932 * 300.00186 * 13 11 10 41 41 H 1.09000 * 109.47388 * 90.00392 * 17 16 14 42 42 H 1.09002 * 109.47016 * 209.99399 * 17 16 14 43 43 H 1.09000 * 109.47218 * 329.99781 * 17 16 14 44 44 H 1.09012 * 109.47083 * 209.99895 * 18 16 14 45 45 H 1.08995 * 109.47378 * 329.99791 * 18 16 14 46 46 H 0.97001 * 119.99976 * 180.02562 * 22 21 19 47 47 H 1.08004 * 119.71619 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1606 -0.0091 2.4163 6 6 2.6225 -0.6642 3.5439 7 6 2.9447 -2.0232 3.4367 8 6 3.4428 -2.7717 4.6089 9 8 3.5757 -2.2091 5.6772 10 8 3.7487 -4.0785 4.4932 11 6 4.2320 -4.7504 5.6861 12 1 4.7596 -4.0354 6.3174 13 6 3.0471 -5.3349 6.4577 14 6 5.1714 -5.8609 5.2915 15 8 5.4096 -6.0660 4.1202 16 7 5.7467 -6.6260 6.2402 17 6 5.4592 -6.3778 7.6552 18 6 6.6593 -7.7057 5.8566 19 6 8.0675 -7.1731 5.7892 20 1 8.2629 -6.1341 6.0097 21 6 9.1061 -8.0121 5.4451 22 7 8.8680 -9.2772 5.1761 23 14 10.8514 -7.3517 5.3609 24 1 11.2445 -6.8208 6.6909 25 1 11.7766 -8.4463 4.9721 26 1 10.9207 -6.2631 4.3532 27 6 2.7870 -2.6580 2.2038 28 7 2.3434 -1.9905 1.1590 29 1 -0.3632 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9029 1.0386 2.4612 37 1 2.7319 -0.1412 4.4825 38 1 2.5195 -6.0499 5.8265 39 1 3.4099 -5.8397 7.3530 40 1 2.3677 -4.5317 6.7431 41 1 4.5959 -6.9693 7.9598 42 1 6.3234 -6.6602 8.2565 43 1 5.2446 -5.3193 7.8021 44 1 6.6082 -8.5048 6.5964 45 1 6.3712 -8.0955 4.8804 46 1 9.5988 -9.8675 4.9344 47 1 3.0309 -3.7056 2.1059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772392534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:11 Heat of formation + Delta-G solvation = -106.005813 kcal Electronic energy + Delta-G solvation = -28334.354858 eV Core-core repulsion = 24288.730278 eV Total energy + Delta-G solvation = -4045.624580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20342 -41.33869 -40.42207 -37.76026 -36.75322 -36.59911 -34.94561 -33.77410 -33.14162 -31.53688 -29.57095 -28.05485 -27.76882 -26.58636 -25.82690 -24.75097 -24.16337 -22.64727 -21.36967 -20.51160 -19.62491 -18.71064 -18.44358 -17.70795 -17.49232 -17.35149 -17.05174 -16.84265 -16.46419 -15.96482 -15.71453 -15.37337 -14.99276 -14.85203 -14.74828 -14.36532 -14.24932 -14.16295 -13.89889 -13.77784 -13.60517 -13.56433 -13.34804 -13.05438 -12.88697 -12.83190 -12.62839 -12.44887 -12.27686 -12.21087 -12.09532 -12.07186 -11.99245 -11.77845 -11.74596 -11.10356 -10.66327 -10.65767 -10.59726 -10.20209 -9.53864 -8.25210 -6.39760 -0.67477 0.08951 1.11526 1.28736 1.35119 1.39354 1.46405 1.59337 2.27132 2.40575 2.60114 2.99254 3.04727 3.35858 3.45401 3.54800 3.68810 3.72932 3.81355 3.84917 4.05345 4.14111 4.24910 4.30675 4.48607 4.49814 4.60074 4.63377 4.66293 4.78486 4.83326 4.86291 4.88048 4.93685 4.98329 5.01828 5.08743 5.13860 5.19806 5.21456 5.35655 5.41204 5.47144 5.49141 5.76119 6.01748 6.38593 6.58213 6.68574 6.75788 7.17976 7.33836 8.81892 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.002378 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.980680 B =11769.552697 C =12614.315501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 C -0.146 4.146 4 C 0.161 3.839 5 C -0.170 4.170 6 C -0.006 4.006 7 C -0.199 4.199 8 C 0.517 3.483 9 O -0.519 6.519 10 O -0.338 6.338 11 C 0.081 3.919 12 H 0.118 0.882 13 C -0.167 4.167 14 C 0.499 3.501 15 O -0.578 6.578 16 N -0.598 5.598 17 C 0.067 3.933 18 C 0.260 3.740 19 C -0.547 4.547 20 H 0.052 0.948 21 C 0.009 3.991 22 N -0.925 5.925 23 Si 0.966 3.034 24 H -0.259 1.259 25 H -0.276 1.276 26 H -0.280 1.280 27 C 0.158 3.842 28 N -0.512 5.512 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.184 0.816 37 H 0.166 0.834 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.035 0.965 45 H 0.001 0.999 46 H 0.268 0.732 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.139 22.137 -1.791 29.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 C -0.203 4.203 4 C 0.024 3.976 5 C -0.189 4.189 6 C -0.031 4.031 7 C -0.202 4.202 8 C 0.362 3.638 9 O -0.409 6.409 10 O -0.253 6.253 11 C 0.023 3.977 12 H 0.135 0.865 13 C -0.224 4.224 14 C 0.286 3.714 15 O -0.458 6.458 16 N -0.331 5.331 17 C -0.075 4.075 18 C 0.140 3.860 19 C -0.586 4.586 20 H 0.070 0.930 21 C -0.190 4.190 22 N -0.565 5.565 23 Si 0.790 3.210 24 H -0.184 1.184 25 H -0.201 1.201 26 H -0.206 1.206 27 C 0.001 3.999 28 N -0.221 5.221 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.201 0.799 37 H 0.183 0.817 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.077 0.923 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.970 21.527 -2.878 28.837 hybrid contribution 1.473 -0.199 0.663 1.628 sum -17.497 21.328 -2.215 27.676 Atomic orbital electron populations 1.21796 0.92053 1.01984 1.03733 1.20274 0.97287 0.96459 0.93153 1.21950 1.01125 0.93130 1.04125 1.22221 0.89769 0.89152 0.96463 1.22323 1.01685 1.03511 0.91429 1.21986 0.89562 0.90795 1.00784 1.20131 1.10610 0.96224 0.93249 1.21260 0.73914 0.80206 0.88402 1.90784 1.51141 1.69507 1.29460 1.86640 1.75281 1.23804 1.39620 1.22585 0.96926 0.93062 0.85177 0.86460 1.22423 0.95876 1.02811 1.01275 1.20628 0.81430 0.83557 0.85787 1.90671 1.63992 1.70954 1.20192 1.48032 1.44419 1.33053 1.07553 1.22262 1.02795 1.02756 0.79657 1.18846 0.87102 0.85019 0.95070 1.21655 0.93066 0.96119 1.47734 0.93010 1.25832 1.03745 0.95054 0.94370 1.70029 1.33998 1.05427 1.47005 0.85495 0.78557 0.77873 0.79062 1.18359 1.20135 1.20612 1.23221 0.89507 1.00454 0.86762 1.67673 1.13129 1.09977 1.31315 0.91302 0.89847 0.93740 0.89844 0.92896 0.90072 0.90351 0.79870 0.81660 0.91294 0.86726 0.89342 0.89503 0.90626 0.89262 0.94736 0.98128 0.92280 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.18 71.98 0.66 -0.69 16 2 C -0.05 -0.66 3.23 -11.54 -0.04 -0.69 16 3 C -0.15 -1.09 8.61 71.98 0.62 -0.47 16 4 C 0.16 2.94 5.79 42.57 0.25 3.18 16 5 C -0.17 -2.46 9.16 22.32 0.20 -2.26 16 6 C -0.01 -0.11 9.72 22.74 0.22 0.11 16 7 C -0.20 -5.05 5.89 -20.00 -0.12 -5.17 16 8 C 0.52 15.51 7.88 70.33 0.55 16.07 16 9 O -0.52 -16.03 15.68 19.94 0.31 -15.72 16 10 O -0.34 -11.61 8.69 -49.78 -0.43 -12.04 16 11 C 0.08 2.63 2.18 29.85 0.07 2.70 16 12 H 0.12 3.59 6.42 -2.39 -0.02 3.57 16 13 C -0.17 -3.95 9.19 71.98 0.66 -3.29 16 14 C 0.50 21.88 7.15 87.66 0.63 22.51 16 15 O -0.58 -31.68 16.08 15.78 0.25 -31.43 16 16 N -0.60 -25.49 2.86 -851.13 -2.43 -27.92 16 17 C 0.07 1.92 8.80 127.77 1.12 3.04 16 18 C 0.26 14.04 5.16 85.63 0.44 14.48 16 19 C -0.55 -31.78 9.39 25.60 0.24 -31.54 16 20 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 21 C 0.01 0.55 5.46 84.66 0.46 1.01 16 22 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 23 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 26 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 27 C 0.16 4.23 10.79 85.04 0.92 5.15 16 28 N -0.51 -12.75 10.25 -182.77 -1.87 -14.62 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.08 0.33 6.48 -2.39 -0.02 0.31 16 36 H 0.18 1.21 6.29 -2.92 -0.02 1.19 16 37 H 0.17 2.52 7.74 -2.91 -0.02 2.49 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.11 2.20 4.53 -2.39 -0.01 2.19 16 40 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.09 1.93 6.95 -2.39 -0.02 1.91 16 42 H 0.07 2.25 8.07 -2.39 -0.02 2.24 16 43 H 0.09 2.04 6.01 -2.39 -0.01 2.03 16 44 H 0.03 1.85 8.07 -2.38 -0.02 1.83 16 45 H 0.00 0.04 7.42 -2.39 -0.02 0.02 16 46 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 47 H 0.16 4.62 7.62 -2.91 -0.02 4.60 16 Total: -1.00 -80.03 392.15 6.01 -74.02 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.98 Total: 11.95 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: 6.89 Total: 24.15 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -4.02 Total: -98.26 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: 0.13 Total: -59.19 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -80.03 6.01 -74.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772392534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.987 kcal (2) G-P(sol) polarization free energy of solvation -80.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds