Wall clock time and date at job start Tue Mar 31 2020 18:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47381 * 2 1 4 4 O 1.45197 * 109.47404 * 120.00680 * 2 1 3 5 5 C 1.34225 * 116.99700 * 269.99885 * 4 2 1 6 6 O 1.20823 * 120.00171 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00108 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47065 * 295.50422 * 7 5 4 9 9 C 1.53004 * 109.46713 * 55.50002 * 7 5 4 10 10 C 1.50695 * 109.47529 * 175.49879 * 7 5 4 11 11 C 1.38672 * 120.42224 * 245.69878 * 10 7 5 12 12 C 1.38632 * 118.41900 * 179.78154 * 11 10 7 13 13 C 1.38220 * 119.16227 * 0.51585 * 12 11 10 14 14 N 1.31855 * 120.76705 * 359.72254 * 13 12 11 15 15 C 1.31889 * 121.72140 * 0.02562 * 14 13 12 16 16 C 1.50705 * 109.46844 * 240.00537 * 2 1 3 17 17 O 1.21281 * 119.99701 * 254.54060 * 16 2 1 18 18 N 1.34776 * 119.99998 * 74.54537 * 16 2 1 19 19 C 1.46499 * 120.00090 * 5.36121 * 18 16 2 20 20 C 1.46501 * 119.99968 * 185.35500 * 18 16 2 21 21 C 1.50701 * 109.46708 * 90.00133 * 20 18 16 22 22 H 1.07999 * 120.00361 * 0.02562 * 21 20 18 23 23 C 1.37884 * 119.99814 * 180.02562 * 21 20 18 24 24 N 1.31513 * 119.99983 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99830 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47089 * 89.99970 * 25 23 21 27 27 H 1.48498 * 109.47114 * 209.99992 * 25 23 21 28 28 H 1.48500 * 109.47389 * 329.99907 * 25 23 21 29 29 H 1.08998 * 109.46851 * 305.09008 * 1 2 3 30 30 H 1.09003 * 109.47198 * 65.08387 * 1 2 3 31 31 H 1.08999 * 109.47131 * 185.08646 * 1 2 3 32 32 H 1.08997 * 109.47319 * 59.99702 * 8 7 5 33 33 H 1.09000 * 109.46903 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.47201 * 299.99519 * 8 7 5 35 35 H 1.08997 * 109.46993 * 60.00414 * 9 7 5 36 36 H 1.09000 * 109.47022 * 179.97438 * 9 7 5 37 37 H 1.08997 * 109.47328 * 300.00088 * 9 7 5 38 38 H 1.07996 * 120.78825 * 0.02562 * 11 10 7 39 39 H 1.07997 * 120.41518 * 180.22124 * 12 11 10 40 40 H 1.08005 * 119.62125 * 179.74786 * 13 12 11 41 41 H 1.08004 * 119.61575 * 179.97438 * 15 14 13 42 42 H 1.08998 * 109.47102 * 93.80960 * 19 18 16 43 43 H 1.09005 * 109.46871 * 213.81038 * 19 18 16 44 44 H 1.09004 * 109.46957 * 333.80977 * 19 18 16 45 45 H 1.08996 * 109.47707 * 209.99966 * 20 18 16 46 46 H 1.09000 * 109.47366 * 330.00420 * 20 18 16 47 47 H 0.96994 * 119.99827 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6846 1.1854 5 6 2.2172 0.0638 2.2810 6 8 1.9974 1.2515 2.2506 7 6 2.7184 -0.5775 3.5493 8 6 1.6711 -1.5635 4.0706 9 6 4.0231 -1.3235 3.2625 10 6 2.9662 0.4872 4.5867 11 6 4.2526 0.7428 5.0371 12 6 4.4335 1.7345 5.9887 13 6 3.3323 2.4232 6.4616 14 7 2.1225 2.1498 6.0140 15 6 1.9136 1.2168 5.1056 16 6 2.0323 -0.7103 -1.2306 17 8 2.4983 -1.8262 -1.1388 18 7 1.9636 -0.1055 -2.4330 19 6 1.5108 1.2845 -2.5290 20 6 2.3420 -0.8379 -3.6441 21 6 1.1312 -1.5361 -4.2077 22 1 0.1755 -1.4432 -3.7135 23 6 1.2437 -2.2935 -5.3543 24 7 2.4077 -2.4071 -5.9559 25 14 -0.2572 -3.1584 -6.0533 26 1 -0.9451 -2.2579 -7.0132 27 1 0.1668 -4.3973 -6.7536 28 1 -1.1866 -3.5074 -4.9489 29 1 -0.3633 0.5908 0.8409 30 1 -0.3634 0.4330 -0.9320 31 1 -0.3633 -1.0236 0.0911 32 1 1.4919 -2.3336 3.3203 33 1 2.0338 -2.0277 4.9877 34 1 0.7417 -1.0321 4.2749 35 1 4.7692 -0.6210 2.8912 36 1 4.3858 -1.7870 4.1799 37 1 3.8439 -2.0936 2.5122 38 1 5.0939 0.1854 4.6527 39 1 5.4218 1.9628 6.3594 40 1 3.4643 3.1944 7.2061 41 1 0.9082 1.0206 4.7634 42 1 2.3740 1.9498 -2.5135 43 1 0.9611 1.4240 -3.4599 44 1 0.8602 1.5137 -1.6850 45 1 2.7356 -0.1398 -4.3829 46 1 3.1056 -1.5760 -3.3987 47 1 2.4867 -2.9396 -6.7627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781263115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:20 Heat of formation + Delta-G solvation = -81.226913 kcal Electronic energy + Delta-G solvation = -29281.970493 eV Core-core repulsion = 25237.420407 eV Total energy + Delta-G solvation = -4044.550086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37461 -40.20673 -38.97475 -36.71584 -35.97899 -34.91831 -32.86713 -32.47655 -31.62137 -30.40534 -27.93061 -27.80660 -26.11375 -25.15548 -24.41190 -23.53073 -23.29054 -21.97796 -20.00970 -18.87144 -17.65935 -17.60422 -16.89415 -16.56764 -16.52405 -16.03759 -15.91263 -15.43049 -14.97448 -14.61926 -14.43374 -14.32781 -13.95674 -13.72041 -13.48986 -13.40564 -13.11780 -12.83939 -12.60368 -12.54601 -12.30521 -12.19927 -12.15985 -12.09786 -11.77168 -11.70256 -11.44358 -11.40997 -11.26128 -10.95069 -10.73528 -10.60070 -10.42463 -10.20463 -10.06879 -9.69127 -9.68809 -9.28423 -8.94237 -8.48292 -7.75262 -6.09169 -4.14530 0.77842 1.00723 2.07808 2.42761 3.20250 3.27237 3.34256 3.38613 3.55058 3.85972 3.95365 4.28631 4.34944 4.39909 4.53270 4.62754 4.63292 4.69932 4.82280 4.90755 5.00185 5.08384 5.21488 5.25484 5.29898 5.37916 5.43040 5.44381 5.49017 5.52214 5.64995 5.68454 5.76792 5.81325 5.85652 5.94435 5.98481 6.06779 6.20527 6.35323 6.42852 6.95778 7.36714 7.43180 7.64985 7.71443 7.86768 8.16390 8.26038 8.80340 8.95453 9.50640 10.98989 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025254 B = 0.002466 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.451818 B =11351.364140 C =11457.228047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.069 3.931 3 H 0.102 0.898 4 O -0.319 6.319 5 C 0.469 3.531 6 O -0.503 6.503 7 C -0.006 4.006 8 C -0.142 4.142 9 C -0.148 4.148 10 C -0.122 4.122 11 C -0.066 4.066 12 C -0.175 4.175 13 C 0.098 3.902 14 N -0.485 5.485 15 C 0.131 3.869 16 C 0.510 3.490 17 O -0.520 6.520 18 N -0.596 5.596 19 C 0.072 3.928 20 C 0.246 3.754 21 C -0.529 4.529 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 7.589 22.982 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 H 0.119 0.881 4 O -0.234 6.234 5 C 0.311 3.689 6 O -0.390 6.390 7 C -0.007 4.007 8 C -0.199 4.199 9 C -0.205 4.205 10 C -0.124 4.124 11 C -0.092 4.092 12 C -0.195 4.195 13 C -0.059 4.059 14 N -0.193 5.193 15 C -0.026 4.026 16 C 0.295 3.705 17 O -0.396 6.396 18 N -0.330 5.330 19 C -0.072 4.072 20 C 0.127 3.873 21 C -0.568 4.568 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.357 7.732 23.126 24.422 hybrid contribution -0.118 -0.611 -0.996 1.174 sum 1.240 7.121 22.130 23.280 Atomic orbital electron populations 1.22174 0.92053 1.04203 1.03808 1.22693 0.96090 0.97370 0.82786 0.88054 1.86614 1.76191 1.41223 1.19348 1.23474 0.74259 0.85795 0.85411 1.90664 1.47782 1.16421 1.84147 1.19259 0.99051 0.94491 0.87945 1.21937 0.96977 0.98397 1.02593 1.22006 0.94094 1.00910 1.03530 1.20352 0.94926 0.98608 0.98476 1.21617 0.96675 0.95957 0.94935 1.22130 1.00721 0.97647 0.98962 1.22817 0.87855 0.97675 0.97555 1.67740 1.24836 1.15494 1.11226 1.22537 0.99022 0.89961 0.91111 1.19747 0.80320 0.86712 0.83762 1.90691 1.44524 1.18950 1.85438 1.48075 1.64637 1.12755 1.07501 1.21855 0.99267 0.82948 1.03103 1.19358 0.96763 0.91942 0.79237 1.21415 0.95303 1.30574 1.09530 0.92360 1.24941 0.96246 0.96207 0.96677 1.69929 1.23358 1.40421 1.19500 0.86482 0.82681 0.79144 0.79035 1.20598 1.21038 1.19855 0.91293 0.89441 0.90567 0.89922 0.90586 0.91700 0.91655 0.90628 0.89593 0.84185 0.84610 0.82756 0.83146 0.93297 0.90318 0.92012 0.94648 0.93550 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.15 37.16 0.34 -1.98 16 2 C 0.07 1.14 2.12 -27.88 -0.06 1.08 16 3 H 0.10 1.57 6.24 -51.93 -0.32 1.24 16 4 O -0.32 -5.12 9.21 -45.76 -0.42 -5.54 16 5 C 0.47 6.51 6.46 36.01 0.23 6.74 16 6 O -0.50 -7.85 14.56 -18.75 -0.27 -8.13 16 7 C -0.01 -0.06 0.81 -156.81 -0.13 -0.18 16 8 C -0.14 -1.21 8.20 37.16 0.30 -0.91 16 9 C -0.15 -1.36 7.06 37.16 0.26 -1.10 16 10 C -0.12 -1.26 4.33 -104.48 -0.45 -1.72 16 11 C -0.07 -0.58 9.09 -39.28 -0.36 -0.94 16 12 C -0.17 -1.38 10.11 -39.44 -0.40 -1.78 16 13 C 0.10 0.88 11.18 -17.55 -0.20 0.69 16 14 N -0.48 -5.64 10.36 -13.25 -0.14 -5.77 16 15 C 0.13 1.48 9.35 -17.55 -0.16 1.32 16 16 C 0.51 10.80 6.97 -10.98 -0.08 10.72 16 17 O -0.52 -13.20 16.12 -13.64 -0.22 -13.42 16 18 N -0.60 -12.59 2.86 -182.95 -0.52 -13.12 16 19 C 0.07 1.14 9.88 59.85 0.59 1.73 16 20 C 0.25 6.35 5.22 -5.19 -0.03 6.33 16 21 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 16 22 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 25 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 28 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.18 6.34 -51.93 -0.33 0.85 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.52 7.10 -51.93 -0.37 0.15 16 35 H 0.06 0.60 7.28 -51.93 -0.38 0.22 16 36 H 0.07 0.50 7.81 -51.93 -0.41 0.10 16 37 H 0.09 0.90 8.03 -51.93 -0.42 0.49 16 38 H 0.14 0.95 6.06 -52.49 -0.32 0.63 16 39 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.16 0.95 8.06 -52.48 -0.42 0.52 16 41 H 0.15 1.60 7.24 -52.48 -0.38 1.22 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 44 H 0.06 0.81 4.62 -51.93 -0.24 0.57 16 45 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 46 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -35.17 389.22 -7.43 -42.59 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.89 Total: -0.09 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -0.55 Total: 6.60 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.08 Total: -44.38 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.91 Total: -27.09 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.17 -7.43 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781263115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.633 kcal (2) G-P(sol) polarization free energy of solvation -35.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds