Wall clock time and date at job start Tue Mar 31 2020 18:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47381 * 2 1 4 4 O 1.45197 * 109.47404 * 120.00680 * 2 1 3 5 5 C 1.34225 * 116.99700 * 269.99885 * 4 2 1 6 6 O 1.20823 * 120.00171 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00108 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47065 * 295.50422 * 7 5 4 9 9 C 1.53004 * 109.46713 * 55.50002 * 7 5 4 10 10 C 1.50695 * 109.47529 * 175.49879 * 7 5 4 11 11 C 1.38672 * 120.42224 * 245.69878 * 10 7 5 12 12 C 1.38632 * 118.41900 * 179.78154 * 11 10 7 13 13 C 1.38220 * 119.16227 * 0.51585 * 12 11 10 14 14 N 1.31855 * 120.76705 * 359.72254 * 13 12 11 15 15 C 1.31889 * 121.72140 * 0.02562 * 14 13 12 16 16 C 1.50705 * 109.46844 * 240.00537 * 2 1 3 17 17 O 1.21281 * 119.99701 * 254.54060 * 16 2 1 18 18 N 1.34776 * 119.99998 * 74.54537 * 16 2 1 19 19 C 1.46499 * 120.00090 * 5.36121 * 18 16 2 20 20 C 1.46501 * 119.99968 * 185.35500 * 18 16 2 21 21 C 1.50701 * 109.46708 * 90.00133 * 20 18 16 22 22 H 1.07999 * 120.00361 * 0.02562 * 21 20 18 23 23 C 1.37884 * 119.99814 * 180.02562 * 21 20 18 24 24 N 1.31513 * 119.99983 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99830 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47089 * 89.99970 * 25 23 21 27 27 H 1.48498 * 109.47114 * 209.99992 * 25 23 21 28 28 H 1.48500 * 109.47389 * 329.99907 * 25 23 21 29 29 H 1.08998 * 109.46851 * 305.09008 * 1 2 3 30 30 H 1.09003 * 109.47198 * 65.08387 * 1 2 3 31 31 H 1.08999 * 109.47131 * 185.08646 * 1 2 3 32 32 H 1.08997 * 109.47319 * 59.99702 * 8 7 5 33 33 H 1.09000 * 109.46903 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.47201 * 299.99519 * 8 7 5 35 35 H 1.08997 * 109.46993 * 60.00414 * 9 7 5 36 36 H 1.09000 * 109.47022 * 179.97438 * 9 7 5 37 37 H 1.08997 * 109.47328 * 300.00088 * 9 7 5 38 38 H 1.07996 * 120.78825 * 0.02562 * 11 10 7 39 39 H 1.07997 * 120.41518 * 180.22124 * 12 11 10 40 40 H 1.08005 * 119.62125 * 179.74786 * 13 12 11 41 41 H 1.08004 * 119.61575 * 179.97438 * 15 14 13 42 42 H 1.08998 * 109.47102 * 93.80960 * 19 18 16 43 43 H 1.09005 * 109.46871 * 213.81038 * 19 18 16 44 44 H 1.09004 * 109.46957 * 333.80977 * 19 18 16 45 45 H 1.08996 * 109.47707 * 209.99966 * 20 18 16 46 46 H 1.09000 * 109.47366 * 330.00420 * 20 18 16 47 47 H 0.96994 * 119.99827 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6846 1.1854 5 6 2.2172 0.0638 2.2810 6 8 1.9974 1.2515 2.2506 7 6 2.7184 -0.5775 3.5493 8 6 1.6711 -1.5635 4.0706 9 6 4.0231 -1.3235 3.2625 10 6 2.9662 0.4872 4.5867 11 6 4.2526 0.7428 5.0371 12 6 4.4335 1.7345 5.9887 13 6 3.3323 2.4232 6.4616 14 7 2.1225 2.1498 6.0140 15 6 1.9136 1.2168 5.1056 16 6 2.0323 -0.7103 -1.2306 17 8 2.4983 -1.8262 -1.1388 18 7 1.9636 -0.1055 -2.4330 19 6 1.5108 1.2845 -2.5290 20 6 2.3420 -0.8379 -3.6441 21 6 1.1312 -1.5361 -4.2077 22 1 0.1755 -1.4432 -3.7135 23 6 1.2437 -2.2935 -5.3543 24 7 2.4077 -2.4071 -5.9559 25 14 -0.2572 -3.1584 -6.0533 26 1 -0.9451 -2.2579 -7.0132 27 1 0.1668 -4.3973 -6.7536 28 1 -1.1866 -3.5074 -4.9489 29 1 -0.3633 0.5908 0.8409 30 1 -0.3634 0.4330 -0.9320 31 1 -0.3633 -1.0236 0.0911 32 1 1.4919 -2.3336 3.3203 33 1 2.0338 -2.0277 4.9877 34 1 0.7417 -1.0321 4.2749 35 1 4.7692 -0.6210 2.8912 36 1 4.3858 -1.7870 4.1799 37 1 3.8439 -2.0936 2.5122 38 1 5.0939 0.1854 4.6527 39 1 5.4218 1.9628 6.3594 40 1 3.4643 3.1944 7.2061 41 1 0.9082 1.0206 4.7634 42 1 2.3740 1.9498 -2.5135 43 1 0.9611 1.4240 -3.4599 44 1 0.8602 1.5137 -1.6850 45 1 2.7356 -0.1398 -4.3829 46 1 3.1056 -1.5760 -3.3987 47 1 2.4867 -2.9396 -6.7627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781263115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:19 Heat of formation + Delta-G solvation = -102.269266 kcal Electronic energy + Delta-G solvation = -29282.882958 eV Core-core repulsion = 25237.420407 eV Total energy + Delta-G solvation = -4045.462551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.38277 -41.23497 -40.43118 -37.86850 -36.91642 -36.69568 -34.86800 -33.23515 -32.95872 -31.14593 -29.70955 -28.62425 -27.61473 -26.32340 -25.63494 -24.73841 -24.14532 -23.32952 -21.01925 -20.43035 -18.73175 -18.70292 -18.48074 -18.03106 -17.56429 -17.29288 -17.02657 -16.88605 -16.31990 -16.20083 -15.69873 -15.06244 -14.93501 -14.85628 -14.63755 -14.38149 -14.17740 -14.14959 -13.86346 -13.64126 -13.55815 -13.39522 -13.28262 -13.26937 -13.11022 -12.91934 -12.83139 -12.68296 -12.52780 -12.42433 -12.22011 -12.15316 -11.95008 -11.73183 -11.45564 -10.78721 -10.64969 -10.64427 -10.40616 -9.98344 -9.54488 -8.23860 -6.38636 0.06352 0.32532 0.98968 1.27496 1.37549 1.40413 1.49911 1.58042 2.29482 2.41861 2.86432 3.06454 3.18920 3.36760 3.47171 3.63112 3.65502 3.75203 3.80717 3.84980 4.02752 4.05329 4.24033 4.30534 4.47436 4.55674 4.57090 4.61075 4.66650 4.69887 4.72835 4.77885 4.83770 4.85904 4.92827 5.03865 5.09003 5.12973 5.18952 5.24184 5.27507 5.29641 5.49874 5.74936 5.76658 6.02100 6.47683 6.60606 6.70099 7.00610 7.17604 7.34613 8.83834 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025254 B = 0.002466 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.451818 B =11351.364140 C =11457.228047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.079 3.921 3 H 0.116 0.884 4 O -0.334 6.334 5 C 0.468 3.532 6 O -0.521 6.521 7 C -0.001 4.001 8 C -0.140 4.140 9 C -0.147 4.147 10 C -0.131 4.131 11 C -0.072 4.072 12 C -0.168 4.168 13 C 0.088 3.912 14 N -0.514 5.514 15 C 0.113 3.887 16 C 0.503 3.497 17 O -0.574 6.574 18 N -0.601 5.601 19 C 0.066 3.934 20 C 0.259 3.741 21 C -0.544 4.544 22 H 0.058 0.942 23 C 0.008 3.992 24 N -0.928 5.928 25 Si 0.969 3.031 26 H -0.263 1.263 27 H -0.282 1.282 28 H -0.271 1.271 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.161 0.839 39 H 0.169 0.831 40 H 0.181 0.819 41 H 0.146 0.854 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.029 0.971 46 H 0.001 0.999 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 8.582 24.593 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.021 3.979 3 H 0.134 0.866 4 O -0.249 6.249 5 C 0.311 3.689 6 O -0.409 6.409 7 C -0.002 4.002 8 C -0.197 4.197 9 C -0.204 4.204 10 C -0.133 4.133 11 C -0.097 4.097 12 C -0.187 4.187 13 C -0.069 4.069 14 N -0.223 5.223 15 C -0.044 4.044 16 C 0.289 3.711 17 O -0.454 6.454 18 N -0.333 5.333 19 C -0.076 4.076 20 C 0.138 3.862 21 C -0.582 4.582 22 H 0.076 0.924 23 C -0.191 4.191 24 N -0.567 5.567 25 Si 0.793 3.207 26 H -0.188 1.188 27 H -0.208 1.208 28 H -0.196 1.196 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.178 0.822 39 H 0.187 0.813 40 H 0.198 0.802 41 H 0.164 0.836 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.047 0.953 46 H 0.020 0.980 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.804 8.776 24.749 26.272 hybrid contribution 0.143 -0.847 -1.429 1.667 sum 0.947 7.928 23.321 24.650 Atomic orbital electron populations 1.22178 0.89941 1.04260 1.05266 1.22533 0.97411 0.96871 0.81115 0.86601 1.86637 1.76568 1.41996 1.19730 1.24242 0.73451 0.85658 0.85546 1.90644 1.48663 1.17208 1.84372 1.19357 0.99865 0.94856 0.86159 1.21962 0.96790 0.97803 1.03157 1.22033 0.93502 1.00355 1.04495 1.20351 0.95554 0.98769 0.98645 1.21958 0.96562 0.96270 0.94935 1.22502 1.01892 0.96420 0.97873 1.23350 0.87477 0.98227 0.97817 1.67722 1.26474 1.16110 1.11946 1.22553 0.99292 0.90699 0.91842 1.20582 0.79187 0.86288 0.84997 1.90653 1.46840 1.21482 1.86416 1.48058 1.64383 1.14543 1.06310 1.22153 1.00780 0.80057 1.04565 1.18857 0.95260 0.91219 0.80868 1.21682 0.95651 1.31055 1.09831 0.92387 1.25868 0.99359 0.96840 0.97046 1.70050 1.25522 1.41168 1.20008 0.85396 0.78826 0.78071 0.78416 1.18829 1.20750 1.19556 0.88945 0.88575 0.91455 0.90744 0.88451 0.91441 0.91733 0.87635 0.91370 0.82197 0.81325 0.80245 0.83643 0.91146 0.90254 0.88884 0.95289 0.98047 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 9.15 71.98 0.66 -3.60 16 2 C 0.08 2.57 2.12 29.85 0.06 2.63 16 3 H 0.12 3.42 6.24 -2.39 -0.01 3.40 16 4 O -0.33 -10.75 9.21 -45.13 -0.42 -11.16 16 5 C 0.47 12.75 6.46 71.24 0.46 13.21 16 6 O -0.52 -15.81 14.56 21.97 0.32 -15.49 16 7 C 0.00 -0.01 0.81 -53.67 -0.04 -0.05 16 8 C -0.14 -2.27 8.20 71.98 0.59 -1.68 16 9 C -0.15 -2.52 7.06 71.98 0.51 -2.02 16 10 C -0.13 -2.54 4.33 -19.77 -0.09 -2.63 16 11 C -0.07 -1.09 9.09 22.47 0.20 -0.88 16 12 C -0.17 -2.14 10.11 22.36 0.23 -1.91 16 13 C 0.09 1.40 11.18 84.68 0.95 2.34 16 14 N -0.51 -11.42 10.36 -195.84 -2.03 -13.45 16 15 C 0.11 2.47 9.35 84.67 0.79 3.26 16 16 C 0.50 21.72 6.97 87.66 0.61 22.33 16 17 O -0.57 -30.52 16.12 15.33 0.25 -30.27 16 18 N -0.60 -25.72 2.86 -851.12 -2.43 -28.15 16 19 C 0.07 2.00 9.88 127.77 1.26 3.27 16 20 C 0.26 13.90 5.22 85.63 0.45 14.35 16 21 C -0.54 -30.80 9.39 25.60 0.24 -30.56 16 22 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 23 C 0.01 0.46 5.46 84.66 0.46 0.92 16 24 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 25 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 28 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 29 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.10 2.38 6.34 -2.39 -0.02 2.37 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.04 7.10 -2.39 -0.02 1.03 16 35 H 0.06 1.10 7.28 -2.39 -0.02 1.09 16 36 H 0.10 1.15 7.81 -2.39 -0.02 1.13 16 37 H 0.07 1.43 8.03 -2.39 -0.02 1.41 16 38 H 0.16 1.69 6.06 -2.91 -0.02 1.67 16 39 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 40 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.15 3.11 7.24 -2.91 -0.02 3.09 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 2.41 8.10 -2.38 -0.02 2.39 16 44 H 0.09 2.22 4.62 -2.39 -0.01 2.21 16 45 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 46 H 0.00 0.09 7.36 -2.39 -0.02 0.07 16 47 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -79.19 389.22 6.32 -72.87 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.98 Total: 15.78 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 7.34 Total: 18.98 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -4.18 Total: -96.93 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: 0.15 Total: -56.93 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -79.19 6.32 -72.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781263115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.396 kcal (2) G-P(sol) polarization free energy of solvation -79.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds