Wall clock time and date at job start Tue Mar 31 2020 17:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47160 * 2 1 4 4 C 1.53003 * 109.47464 * 239.99667 * 2 1 3 5 5 O 1.42900 * 109.46789 * 305.00147 * 4 2 1 6 6 C 1.35905 * 116.99641 * 179.97438 * 5 4 2 7 7 C 1.38737 * 120.05290 * 179.97438 * 6 5 4 8 8 C 1.38142 * 119.94094 * 180.02562 * 7 6 5 9 9 C 1.38269 * 120.05674 * 359.97438 * 8 7 6 10 10 C 1.38263 * 120.11156 * 0.29795 * 9 8 7 11 11 C 1.38143 * 120.05579 * 359.44992 * 10 9 8 12 12 N 1.46502 * 109.47155 * 119.99515 * 2 1 3 13 13 C 1.34778 * 119.99948 * 275.00170 * 12 2 1 14 14 O 1.21341 * 120.00161 * 359.97438 * 13 12 2 15 15 C 1.49454 * 119.99853 * 180.02562 * 13 12 2 16 16 O 1.21348 * 119.99653 * 359.97438 * 15 13 12 17 17 N 1.34768 * 120.00183 * 180.02562 * 15 13 12 18 18 C 1.46502 * 120.00279 * 179.97438 * 17 15 13 19 19 C 1.52996 * 109.47098 * 179.97438 * 18 17 15 20 20 C 1.53001 * 109.47248 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47563 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99479 * 0.02562 * 21 20 19 23 23 C 1.37869 * 120.00099 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00128 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00220 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47035 * 89.99793 * 25 23 21 27 27 H 1.48500 * 109.47058 * 209.99527 * 25 23 21 28 28 H 1.48495 * 109.46989 * 329.99625 * 25 23 21 29 29 H 1.09002 * 109.47114 * 60.00473 * 1 2 3 30 30 H 1.09004 * 109.47388 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47460 * 300.00046 * 1 2 3 32 32 H 1.08991 * 109.47223 * 184.99998 * 4 2 1 33 33 H 1.08997 * 109.46956 * 64.99567 * 4 2 1 34 34 H 1.07999 * 120.02412 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.97190 * 180.02562 * 8 7 6 36 36 H 1.08002 * 119.94064 * 180.02562 * 9 8 7 37 37 H 1.08001 * 119.97259 * 179.69844 * 10 9 8 38 38 H 1.08005 * 120.03117 * 180.25494 * 11 10 9 39 39 H 0.96997 * 120.00069 * 95.00173 * 12 2 1 40 40 H 0.97009 * 119.99970 * 359.97438 * 17 15 13 41 41 H 1.08993 * 109.47107 * 299.99685 * 18 17 15 42 42 H 1.08999 * 109.46986 * 59.99619 * 18 17 15 43 43 H 1.09004 * 109.47471 * 300.00030 * 19 18 17 44 44 H 1.08999 * 109.47391 * 60.00017 * 19 18 17 45 45 H 1.09004 * 109.46860 * 300.00344 * 20 19 18 46 46 H 1.08999 * 109.46960 * 59.99693 * 20 19 18 47 47 H 0.97001 * 120.00475 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3093 6 6 1.8227 -2.8088 -2.3662 7 6 1.3072 -4.0911 -2.4871 8 6 1.6675 -4.8805 -3.5620 9 6 2.5406 -4.3933 -4.5172 10 6 3.0600 -3.1177 -4.3959 11 6 2.6989 -2.3225 -3.3256 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8588 1.1594 2.4115 15 6 2.6457 -0.7224 3.5774 16 8 2.9343 -1.8998 3.5229 17 7 2.7739 -0.0501 4.7384 18 6 3.2623 -0.7407 5.9346 19 6 3.3137 0.2425 7.1057 20 6 3.8243 -0.4784 8.3549 21 6 3.8756 0.4901 9.5083 22 1 3.5737 1.5171 9.3648 23 6 4.3068 0.0649 10.7468 24 7 4.3521 0.9102 11.7533 25 14 4.8283 -1.7116 10.9952 26 1 6.2813 -1.8442 10.7192 27 1 4.5516 -2.1174 12.3966 28 1 4.0664 -2.5854 10.0672 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.1263 -0.7995 -1.2055 33 1 1.7516 -0.1585 -2.1369 34 1 0.6256 -4.4721 -1.7411 35 1 1.2662 -5.8786 -3.6569 36 1 2.8206 -5.0119 -5.3570 37 1 3.7456 -2.7412 -5.1407 38 1 3.1017 -1.3246 -3.2335 39 1 2.2490 -1.6316 1.1528 40 1 2.5428 0.8910 4.7820 41 1 2.5900 -1.5629 6.1794 42 1 4.2617 -1.1325 5.7454 43 1 3.9863 1.0646 6.8607 44 1 2.3145 0.6347 7.2951 45 1 3.1521 -1.3008 8.6000 46 1 4.8236 -0.8703 8.1652 47 1 4.6558 0.6112 12.6247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793701616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:34 Heat of formation + Delta-G solvation = -96.226468 kcal Electronic energy + Delta-G solvation = -27053.164086 eV Core-core repulsion = 23007.963570 eV Total energy + Delta-G solvation = -4045.200516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.95623 -40.44239 -38.81569 -37.96646 -36.09781 -35.49817 -33.35515 -31.84041 -31.48674 -31.36468 -30.10724 -27.68052 -27.42026 -25.06666 -23.31170 -22.85014 -22.46031 -21.12537 -20.74891 -20.20489 -18.81829 -18.50745 -17.22643 -16.74914 -16.54314 -16.43718 -16.23646 -16.00640 -15.49871 -15.18404 -14.94640 -14.84509 -14.24807 -13.98901 -13.95846 -13.85027 -13.75844 -13.50242 -13.03778 -12.79333 -12.72819 -12.25366 -12.08830 -12.04800 -11.97561 -11.74632 -11.61755 -11.49179 -11.27041 -11.11974 -10.92526 -10.18603 -9.98865 -9.79316 -9.61634 -9.53120 -9.46902 -9.24534 -9.07885 -8.67728 -8.56659 -6.07054 -4.06118 0.87456 0.98770 1.34007 2.21849 2.61542 3.15274 3.30192 3.33536 3.37928 3.41484 3.55853 4.02976 4.35013 4.38469 4.42721 4.43233 4.45656 4.62147 4.68574 4.80494 4.91863 4.94844 5.05759 5.18526 5.26692 5.27888 5.43183 5.49438 5.53879 5.56194 5.80144 5.86975 5.92527 5.93650 5.96684 6.08344 6.15108 6.29170 6.38203 6.52984 6.73283 6.83620 6.90926 7.19521 7.32414 7.32905 7.64188 7.74261 7.97194 8.49264 8.96933 9.54790 11.06136 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.001664 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.756092 B =16819.876461 C =17742.688783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.112 0.888 4 C 0.050 3.950 5 O -0.310 6.310 6 C 0.131 3.869 7 C -0.151 4.151 8 C -0.081 4.081 9 C -0.160 4.160 10 C -0.081 4.081 11 C -0.210 4.210 12 N -0.698 5.698 13 C 0.511 3.489 14 O -0.519 6.519 15 C 0.501 3.499 16 O -0.525 6.525 17 N -0.691 5.691 18 C 0.111 3.889 19 C -0.115 4.115 20 C -0.010 4.010 21 C -0.523 4.523 22 H 0.073 0.927 23 C 0.067 3.933 24 N -0.902 5.902 25 Si 0.880 3.120 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.265 1.265 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.417 0.583 40 H 0.413 0.587 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.019 0.981 46 H 0.015 0.985 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.135 -6.966 -36.042 37.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.129 0.871 4 C -0.026 4.026 5 O -0.224 6.224 6 C 0.086 3.914 7 C -0.169 4.169 8 C -0.099 4.099 9 C -0.178 4.178 10 C -0.099 4.099 11 C -0.228 4.228 12 N -0.353 5.353 13 C 0.292 3.708 14 O -0.394 6.394 15 C 0.280 3.720 16 O -0.402 6.402 17 N -0.343 5.343 18 C -0.011 4.011 19 C -0.153 4.153 20 C -0.048 4.048 21 C -0.561 4.561 22 H 0.091 0.909 23 C -0.134 4.134 24 N -0.541 5.541 25 Si 0.707 3.293 26 H -0.202 1.202 27 H -0.214 1.214 28 H -0.189 1.189 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.254 0.746 40 H 0.249 0.751 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.038 0.962 46 H 0.033 0.967 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.215 -6.974 -35.661 36.864 hybrid contribution 0.509 -0.712 0.148 0.888 sum -5.705 -7.685 -35.513 36.781 Atomic orbital electron populations 1.22133 0.93731 1.03437 1.02939 1.21178 0.95860 0.96845 0.81888 0.87051 1.23176 0.98544 0.82297 0.98590 1.86081 1.67190 1.26038 1.43045 1.19008 0.94309 0.91130 0.86991 1.20502 1.03733 0.92157 1.00543 1.21009 0.96437 0.99323 0.93111 1.21099 0.99915 0.96464 1.00323 1.20971 0.98196 0.93907 0.96835 1.21282 1.02720 1.01649 0.97194 1.45811 1.65622 1.15299 1.08585 1.20338 0.78739 0.86969 0.84781 1.90763 1.48543 1.15332 1.84791 1.19994 0.80163 0.87131 0.84693 1.90767 1.49193 1.15261 1.84973 1.46016 1.63987 1.15132 1.09174 1.21850 0.99659 0.96453 0.83125 1.21743 1.02045 0.97734 0.93800 1.19505 0.95932 0.96627 0.92780 1.21090 1.44467 0.97645 0.92915 0.90932 1.25024 0.95009 0.97466 0.95936 1.69911 1.47660 1.34953 1.01568 0.86776 0.79376 0.85721 0.77425 1.20249 1.21350 1.18908 0.91276 0.91169 0.91502 0.90872 0.89985 0.85062 0.85311 0.85910 0.85798 0.85481 0.74595 0.75140 0.91086 0.91111 0.91813 0.91778 0.96231 0.96675 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.29 37.16 0.35 -0.86 16 2 C 0.15 1.07 2.98 -67.93 -0.20 0.87 16 3 H 0.11 0.80 7.58 -51.92 -0.39 0.41 16 4 C 0.05 0.29 4.48 37.16 0.17 0.45 16 5 O -0.31 -2.41 8.99 -19.44 -0.17 -2.58 16 6 C 0.13 1.03 6.69 -39.21 -0.26 0.77 16 7 C -0.15 -1.13 9.99 -39.43 -0.39 -1.53 16 8 C -0.08 -0.51 10.04 -39.61 -0.40 -0.91 16 9 C -0.16 -0.96 10.04 -39.56 -0.40 -1.36 16 10 C -0.08 -0.50 10.04 -39.61 -0.40 -0.89 16 11 C -0.21 -1.41 9.04 -39.43 -0.36 -1.76 16 12 N -0.70 -6.75 5.05 -54.23 -0.27 -7.02 16 13 C 0.51 6.31 7.85 -11.58 -0.09 6.22 16 14 O -0.52 -7.20 16.14 5.50 0.09 -7.11 16 15 C 0.50 7.14 7.89 -11.59 -0.09 7.05 16 16 O -0.53 -8.60 16.48 5.50 0.09 -8.51 16 17 N -0.69 -9.83 5.55 -60.73 -0.34 -10.17 16 18 C 0.11 1.79 5.67 -4.04 -0.02 1.76 16 19 C -0.12 -2.13 5.27 -26.73 -0.14 -2.27 16 20 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 21 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 22 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 23 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 24 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 25 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.56 7.56 -51.93 -0.39 0.17 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.38 7.66 -51.93 -0.40 -0.01 16 33 H 0.08 0.32 7.66 -51.93 -0.40 -0.08 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.12 0.51 8.06 -52.49 -0.42 0.08 16 38 H 0.13 0.63 6.30 -52.48 -0.33 0.30 16 39 H 0.42 4.00 7.85 -40.82 -0.32 3.68 16 40 H 0.41 5.36 7.95 -40.82 -0.32 5.04 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 46 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 397.54 15.07 5.99 5.99 Total: -1.00 -33.34 397.54 -8.43 -41.78 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.14 Total: 3.61 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.78 Total: -5.99 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.16 Total: -44.09 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.00 Total: -18.20 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.34 -8.43 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793701616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.450 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds