Wall clock time and date at job start Tue Mar 31 2020 17:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47160 * 2 1 4 4 C 1.53003 * 109.47464 * 239.99667 * 2 1 3 5 5 O 1.42900 * 109.46789 * 305.00147 * 4 2 1 6 6 C 1.35905 * 116.99641 * 179.97438 * 5 4 2 7 7 C 1.38737 * 120.05290 * 179.97438 * 6 5 4 8 8 C 1.38142 * 119.94094 * 180.02562 * 7 6 5 9 9 C 1.38269 * 120.05674 * 359.97438 * 8 7 6 10 10 C 1.38263 * 120.11156 * 0.29795 * 9 8 7 11 11 C 1.38143 * 120.05579 * 359.44992 * 10 9 8 12 12 N 1.46502 * 109.47155 * 119.99515 * 2 1 3 13 13 C 1.34778 * 119.99948 * 275.00170 * 12 2 1 14 14 O 1.21341 * 120.00161 * 359.97438 * 13 12 2 15 15 C 1.49454 * 119.99853 * 180.02562 * 13 12 2 16 16 O 1.21348 * 119.99653 * 359.97438 * 15 13 12 17 17 N 1.34768 * 120.00183 * 180.02562 * 15 13 12 18 18 C 1.46502 * 120.00279 * 179.97438 * 17 15 13 19 19 C 1.52996 * 109.47098 * 179.97438 * 18 17 15 20 20 C 1.53001 * 109.47248 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47563 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99479 * 0.02562 * 21 20 19 23 23 C 1.37869 * 120.00099 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00128 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00220 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47035 * 89.99793 * 25 23 21 27 27 H 1.48500 * 109.47058 * 209.99527 * 25 23 21 28 28 H 1.48495 * 109.46989 * 329.99625 * 25 23 21 29 29 H 1.09002 * 109.47114 * 60.00473 * 1 2 3 30 30 H 1.09004 * 109.47388 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47460 * 300.00046 * 1 2 3 32 32 H 1.08991 * 109.47223 * 184.99998 * 4 2 1 33 33 H 1.08997 * 109.46956 * 64.99567 * 4 2 1 34 34 H 1.07999 * 120.02412 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.97190 * 180.02562 * 8 7 6 36 36 H 1.08002 * 119.94064 * 180.02562 * 9 8 7 37 37 H 1.08001 * 119.97259 * 179.69844 * 10 9 8 38 38 H 1.08005 * 120.03117 * 180.25494 * 11 10 9 39 39 H 0.96997 * 120.00069 * 95.00173 * 12 2 1 40 40 H 0.97009 * 119.99970 * 359.97438 * 17 15 13 41 41 H 1.08993 * 109.47107 * 299.99685 * 18 17 15 42 42 H 1.08999 * 109.46986 * 59.99619 * 18 17 15 43 43 H 1.09004 * 109.47471 * 300.00030 * 19 18 17 44 44 H 1.08999 * 109.47391 * 60.00017 * 19 18 17 45 45 H 1.09004 * 109.46860 * 300.00344 * 20 19 18 46 46 H 1.08999 * 109.46960 * 59.99693 * 20 19 18 47 47 H 0.97001 * 120.00475 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3093 6 6 1.8227 -2.8088 -2.3662 7 6 1.3072 -4.0911 -2.4871 8 6 1.6675 -4.8805 -3.5620 9 6 2.5406 -4.3933 -4.5172 10 6 3.0600 -3.1177 -4.3959 11 6 2.6989 -2.3225 -3.3256 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8588 1.1594 2.4115 15 6 2.6457 -0.7224 3.5774 16 8 2.9343 -1.8998 3.5229 17 7 2.7739 -0.0501 4.7384 18 6 3.2623 -0.7407 5.9346 19 6 3.3137 0.2425 7.1057 20 6 3.8243 -0.4784 8.3549 21 6 3.8756 0.4901 9.5083 22 1 3.5737 1.5171 9.3648 23 6 4.3068 0.0649 10.7468 24 7 4.3521 0.9102 11.7533 25 14 4.8283 -1.7116 10.9952 26 1 6.2813 -1.8442 10.7192 27 1 4.5516 -2.1174 12.3966 28 1 4.0664 -2.5854 10.0672 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.1263 -0.7995 -1.2055 33 1 1.7516 -0.1585 -2.1369 34 1 0.6256 -4.4721 -1.7411 35 1 1.2662 -5.8786 -3.6569 36 1 2.8206 -5.0119 -5.3570 37 1 3.7456 -2.7412 -5.1407 38 1 3.1017 -1.3246 -3.2335 39 1 2.2490 -1.6316 1.1528 40 1 2.5428 0.8910 4.7820 41 1 2.5900 -1.5629 6.1794 42 1 4.2617 -1.1325 5.7454 43 1 3.9863 1.0646 6.8607 44 1 2.3145 0.6347 7.2951 45 1 3.1521 -1.3008 8.6000 46 1 4.8236 -0.8703 8.1652 47 1 4.6558 0.6112 12.6247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793701616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:33 Heat of formation + Delta-G solvation = -119.046761 kcal Electronic energy + Delta-G solvation = -27054.153648 eV Core-core repulsion = 23007.963570 eV Total energy + Delta-G solvation = -4046.190078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.85751 -41.07208 -39.81504 -38.54720 -37.26238 -36.50722 -35.16774 -33.31345 -32.52110 -31.85610 -30.59325 -29.33653 -27.93509 -26.33537 -24.33787 -23.55891 -23.24396 -22.30226 -21.74468 -21.36712 -19.66451 -19.27271 -18.86365 -18.06580 -17.32163 -17.18048 -16.92462 -16.76031 -16.57209 -16.21238 -16.09991 -15.86296 -15.39599 -15.07407 -14.92701 -14.77867 -14.53264 -14.30220 -14.25053 -13.82520 -13.65648 -13.50616 -13.40948 -12.97087 -12.77729 -12.71962 -12.67443 -12.46020 -12.19964 -11.94745 -11.90793 -11.78583 -11.72588 -11.61049 -11.33876 -10.75684 -10.74232 -10.42971 -10.29054 -9.92853 -9.15637 -8.28576 -6.33064 0.28240 0.41720 0.51385 1.24701 1.38150 1.39858 1.51566 2.05485 2.15355 2.37255 2.58490 2.87385 3.07216 3.36887 3.51969 3.88094 3.93822 4.01251 4.02652 4.16658 4.19119 4.25756 4.33506 4.40425 4.47180 4.52660 4.59133 4.66341 4.77431 4.80710 4.85685 4.86536 5.01482 5.10700 5.15223 5.17891 5.27780 5.37716 5.45896 5.50821 5.54949 5.63656 5.64761 5.84577 5.88461 6.27805 6.28843 6.43317 6.66237 6.75269 6.88263 7.31785 8.87941 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.001664 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.756092 B =16819.876461 C =17742.688783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.118 0.882 4 C 0.052 3.948 5 O -0.324 6.324 6 C 0.114 3.886 7 C -0.172 4.172 8 C -0.088 4.088 9 C -0.167 4.167 10 C -0.089 4.089 11 C -0.217 4.217 12 N -0.686 5.686 13 C 0.516 3.484 14 O -0.536 6.536 15 C 0.501 3.499 16 O -0.547 6.547 17 N -0.688 5.688 18 C 0.124 3.876 19 C -0.104 4.104 20 C -0.011 4.011 21 C -0.533 4.533 22 H 0.035 0.965 23 C 0.004 3.996 24 N -0.951 5.951 25 Si 0.949 3.051 26 H -0.267 1.267 27 H -0.286 1.286 28 H -0.245 1.245 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.418 0.582 40 H 0.419 0.581 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.025 0.975 46 H 0.024 0.976 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 -8.404 -38.569 39.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 H 0.135 0.865 4 C -0.024 4.024 5 O -0.238 6.238 6 C 0.069 3.931 7 C -0.190 4.190 8 C -0.105 4.105 9 C -0.185 4.185 10 C -0.106 4.106 11 C -0.236 4.236 12 N -0.339 5.339 13 C 0.297 3.703 14 O -0.413 6.413 15 C 0.282 3.718 16 O -0.425 6.425 17 N -0.340 5.340 18 C 0.001 3.999 19 C -0.142 4.142 20 C -0.049 4.049 21 C -0.571 4.571 22 H 0.053 0.947 23 C -0.193 4.193 24 N -0.592 5.592 25 Si 0.773 3.227 26 H -0.192 1.192 27 H -0.212 1.212 28 H -0.168 1.168 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.148 0.852 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.256 0.744 40 H 0.256 0.744 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.043 0.957 46 H 0.042 0.958 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.838 -8.410 -38.236 39.583 hybrid contribution 0.352 -0.197 0.871 0.960 sum -5.486 -8.607 -37.365 38.734 Atomic orbital electron populations 1.22089 0.93647 1.02957 1.03093 1.21387 0.95875 0.97179 0.81463 0.86474 1.23241 0.98851 0.81832 0.98435 1.86050 1.67629 1.26767 1.43354 1.19193 0.95081 0.91388 0.87449 1.20697 1.04398 0.92676 1.01253 1.21281 0.96435 1.00026 0.92797 1.21421 0.99533 0.96833 1.00727 1.21310 0.98301 0.93956 0.97075 1.21522 1.02464 1.02542 0.97042 1.45871 1.64290 1.15305 1.08484 1.19948 0.78932 0.86631 0.84825 1.90763 1.49751 1.15848 1.84976 1.20313 0.79520 0.86865 0.85123 1.90755 1.50162 1.16205 1.85381 1.45890 1.63853 1.15428 1.08836 1.21549 0.99962 0.95574 0.82834 1.21522 1.01787 0.97869 0.93055 1.19462 0.96745 0.95884 0.92806 1.21479 1.43626 0.97147 0.94896 0.94679 1.26012 0.95184 1.02503 0.95600 1.70067 1.49331 1.37509 1.02290 0.85668 0.79523 0.79836 0.77700 1.19186 1.21167 1.16787 0.89210 0.91921 0.93241 0.90130 0.87610 0.85247 0.83656 0.84043 0.83806 0.83890 0.74448 0.74388 0.91046 0.90885 0.91726 0.91810 0.95712 0.95782 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.29 71.98 0.67 -1.49 16 2 C 0.14 1.89 2.98 44.99 0.13 2.02 16 3 H 0.12 1.47 7.58 -2.38 -0.02 1.45 16 4 C 0.05 0.49 4.48 71.98 0.32 0.82 16 5 O -0.32 -4.67 8.99 -92.48 -0.83 -5.50 16 6 C 0.11 1.68 6.69 22.51 0.15 1.83 16 7 C -0.17 -2.51 9.99 22.37 0.22 -2.28 16 8 C -0.09 -1.01 10.04 22.25 0.22 -0.79 16 9 C -0.17 -1.72 10.04 22.28 0.22 -1.50 16 10 C -0.09 -0.91 10.04 22.25 0.22 -0.69 16 11 C -0.22 -2.53 9.04 22.37 0.20 -2.33 16 12 N -0.69 -12.48 5.05 -443.86 -2.24 -14.72 16 13 C 0.52 12.24 7.85 87.27 0.69 12.92 16 14 O -0.54 -14.35 16.14 -3.22 -0.05 -14.40 16 15 C 0.50 13.77 7.89 87.27 0.69 14.46 16 16 O -0.55 -17.32 16.48 -3.24 -0.05 -17.37 16 17 N -0.69 -18.75 5.55 -464.43 -2.58 -21.33 16 18 C 0.12 3.77 5.67 86.38 0.49 4.26 16 19 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 20 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 21 C -0.53 -30.33 9.66 25.60 0.25 -30.08 16 22 H 0.03 2.18 7.99 -2.91 -0.02 2.16 16 23 C 0.00 0.22 5.47 84.65 0.46 0.68 16 24 N -0.95 -59.63 13.96 21.44 0.30 -59.33 16 25 Si 0.95 43.98 27.47 68.60 1.88 45.86 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 28 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.95 7.56 -2.39 -0.02 0.93 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.67 7.66 -2.39 -0.02 0.65 16 33 H 0.11 0.53 7.66 -2.39 -0.02 0.51 16 34 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.14 0.84 8.06 -2.91 -0.02 0.81 16 37 H 0.14 0.81 8.06 -2.91 -0.02 0.78 16 38 H 0.14 1.07 6.30 -2.91 -0.02 1.05 16 39 H 0.42 7.62 7.85 -92.71 -0.73 6.89 16 40 H 0.42 10.46 7.95 -92.70 -0.74 9.72 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.02 1.09 7.20 -2.38 -0.02 1.07 16 46 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 47 H 0.27 15.56 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -72.18 397.54 1.12 -71.06 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -0.53 Total: 21.88 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 5.23 Total: -6.14 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -4.52 Total: -95.38 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -0.94 Total: -37.27 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -72.18 1.12 -71.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793701616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.991 kcal (2) G-P(sol) polarization free energy of solvation -72.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds