Wall clock time and date at job start Tue Mar 31 2020 18:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.47274 * 2 1 4 4 C 1.46900 * 111.00111 * 164.48184 * 3 2 1 5 5 C 1.53004 * 109.46835 * 293.95786 * 4 3 2 6 6 C 1.46901 * 111.00615 * 288.43734 * 3 2 1 7 7 C 1.50695 * 109.47229 * 164.16673 * 6 3 2 8 8 C 1.38370 * 119.84638 * 275.57970 * 7 6 3 9 9 C 1.37951 * 120.15398 * 179.72675 * 8 7 6 10 10 C 1.39627 * 119.83891 * 0.56654 * 9 8 7 11 11 C 1.47732 * 120.14631 * 179.68408 * 10 9 8 12 12 O 1.21470 * 119.99723 * 180.02562 * 11 10 9 13 13 O 1.34704 * 119.99885 * 0.02562 * 11 10 9 14 14 C 1.45204 * 116.99974 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47235 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00130 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00428 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00378 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00090 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99887 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00069 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00200 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47493 * 89.99681 * 22 20 18 24 24 H 1.48500 * 109.46996 * 210.00096 * 22 20 18 25 25 H 1.48507 * 109.46685 * 329.99478 * 22 20 18 26 26 C 1.39629 * 119.70502 * 359.70646 * 10 9 8 27 27 C 1.37940 * 119.84799 * 0.02562 * 26 10 9 28 28 H 1.09001 * 109.47093 * 66.05771 * 1 2 3 29 29 H 1.08995 * 109.47102 * 186.06472 * 1 2 3 30 30 H 1.09001 * 109.46854 * 306.06359 * 1 2 3 31 31 H 1.09006 * 109.47055 * 240.00870 * 2 1 3 32 32 H 1.08996 * 109.47413 * 120.00506 * 2 1 3 33 33 H 1.09001 * 109.47164 * 53.95077 * 4 3 2 34 34 H 1.08997 * 109.47390 * 173.95909 * 4 3 2 35 35 H 1.08995 * 109.47334 * 299.99620 * 5 4 3 36 36 H 1.09005 * 109.47428 * 60.00378 * 5 4 3 37 37 H 1.09011 * 109.46892 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.46761 * 284.16823 * 6 3 2 39 39 H 1.09002 * 109.46876 * 44.16280 * 6 3 2 40 40 H 1.08000 * 119.92676 * 359.97438 * 8 7 6 41 41 H 1.07995 * 120.08069 * 180.27372 * 9 8 7 42 42 H 1.08993 * 109.47004 * 300.00028 * 14 13 11 43 43 H 1.09004 * 109.47051 * 59.99984 * 14 13 11 44 44 H 0.96998 * 119.99641 * 0.02562 * 17 15 14 45 45 H 0.96999 * 120.00601 * 179.97438 * 21 20 18 46 46 H 1.07997 * 120.07792 * 179.97438 * 26 10 9 47 47 H 1.08003 * 119.92509 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4410 1.4408 0.3669 5 6 3.6103 0.9947 1.8207 6 6 1.7863 2.0260 -1.3010 7 6 1.9313 3.5192 -1.1585 8 6 0.8571 4.2773 -0.7272 9 6 0.9844 5.6439 -0.5891 10 6 2.1973 6.2633 -0.8969 11 6 2.3391 7.7272 -0.7582 12 8 3.3954 8.2633 -1.0272 13 8 1.2970 8.4675 -0.3333 14 6 1.5084 9.8996 -0.2200 15 6 0.2427 10.5573 0.2662 16 8 -0.7406 9.8852 0.4954 17 7 0.2034 11.8924 0.4466 18 6 -0.9482 12.4908 0.8885 19 1 -1.8238 11.8923 1.0925 20 6 -0.9886 13.8672 1.0749 21 7 -2.0922 14.4407 1.4990 22 14 0.5261 14.9022 0.7227 23 1 0.5055 15.3435 -0.6950 24 1 0.5302 16.0919 1.6115 25 1 1.7468 14.0940 0.9720 26 6 3.2755 5.4929 -1.3370 27 6 3.1360 4.1266 -1.4653 28 1 -0.3633 0.4170 -0.9392 29 1 -0.3633 -1.0219 0.1086 30 1 -0.3633 0.6050 0.8307 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 4.0109 0.7786 -0.2849 34 1 3.8052 2.4621 0.2555 35 1 3.0406 1.6568 2.4726 36 1 3.2462 -0.0266 1.9322 37 1 4.6651 1.0357 2.0928 38 1 2.5147 1.6575 -2.0234 39 1 0.7800 1.7900 -1.6470 40 1 -0.0821 3.7975 -0.4943 41 1 0.1466 6.2339 -0.2481 42 1 2.3134 10.0931 0.4888 43 1 1.7776 10.3054 -1.1953 44 1 0.9896 12.4299 0.2630 45 1 -2.1204 15.4015 1.6295 46 1 4.2163 5.9658 -1.5772 47 1 3.9693 3.5295 -1.8052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801427675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:07 Heat of formation + Delta-G solvation = -87.753449 kcal Electronic energy + Delta-G solvation = -27549.052263 eV Core-core repulsion = 23504.219165 eV Total energy + Delta-G solvation = -4044.833098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.58902 -39.57404 -38.36481 -37.81517 -36.12585 -34.04741 -32.78523 -32.25098 -31.78511 -31.18980 -29.67570 -28.51011 -26.25139 -24.51139 -23.52813 -22.99945 -22.68362 -20.98260 -20.48662 -19.63202 -18.59888 -18.04051 -16.91362 -16.52681 -16.36874 -15.95837 -15.67800 -15.64340 -15.02769 -14.91240 -14.81549 -14.40440 -14.20403 -14.16520 -13.73137 -13.49541 -13.17869 -12.92552 -12.87556 -12.61773 -12.32328 -12.29432 -12.24864 -12.17772 -12.09003 -11.89965 -11.64646 -11.39056 -11.25336 -11.15114 -10.97770 -10.63945 -10.50531 -10.50126 -10.03807 -9.66300 -9.17058 -9.09975 -8.73270 -8.65324 -8.27991 -6.37971 -3.90768 0.53293 1.19676 2.48337 2.62290 3.00087 3.04655 3.13219 3.40011 3.57228 3.77457 4.05006 4.31226 4.44319 4.48816 4.54540 4.74232 4.75523 4.78643 4.85700 4.96588 5.00010 5.07679 5.12626 5.12841 5.17849 5.25923 5.32448 5.37421 5.42150 5.49646 5.56855 5.60545 5.62779 5.65154 5.69037 5.81858 5.85581 5.89176 6.05863 6.18522 6.30149 6.50903 6.60675 6.66989 6.69236 7.46136 7.81470 8.02312 8.49186 8.85000 9.31262 9.66992 10.74288 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.001928 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.961017 B =14519.169028 C =15119.216297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 N -0.533 5.533 4 C 0.045 3.955 5 C -0.150 4.150 6 C 0.087 3.913 7 C -0.046 4.046 8 C -0.110 4.110 9 C -0.056 4.056 10 C -0.121 4.121 11 C 0.505 3.495 12 O -0.514 6.514 13 O -0.319 6.319 14 C 0.059 3.941 15 C 0.448 3.552 16 O -0.557 6.557 17 N -0.580 5.580 18 C -0.307 4.307 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.875 5.875 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.268 1.268 26 C -0.055 4.055 27 C -0.131 4.131 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.132 0.868 41 H 0.146 0.854 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.373 0.627 45 H 0.275 0.725 46 H 0.136 0.864 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.661 -27.684 -5.645 30.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 N -0.257 5.257 4 C -0.082 4.082 5 C -0.207 4.207 6 C -0.040 4.040 7 C -0.047 4.047 8 C -0.128 4.128 9 C -0.074 4.074 10 C -0.122 4.122 11 C 0.350 3.650 12 O -0.404 6.404 13 O -0.234 6.234 14 C -0.019 4.019 15 C 0.233 3.767 16 O -0.438 6.438 17 N -0.220 5.220 18 C -0.436 4.436 19 H 0.140 0.860 20 C -0.159 4.159 21 N -0.514 5.514 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.193 1.193 26 C -0.074 4.074 27 C -0.150 4.150 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.150 0.850 41 H 0.164 0.836 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.206 0.794 45 H 0.086 0.914 46 H 0.154 0.846 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.886 -27.503 -5.133 30.398 hybrid contribution 1.750 0.791 -0.840 2.096 sum 13.635 -26.712 -5.973 30.580 Atomic orbital electron populations 1.21812 0.94667 1.01698 1.02597 1.22164 0.96356 0.88604 1.00990 1.62048 1.17927 1.16982 1.28782 1.22169 0.87700 1.01741 0.96603 1.21819 1.01495 1.01422 0.95972 1.21142 1.02345 0.90242 0.90231 1.19976 0.93535 0.95050 0.96118 1.21008 0.99119 0.93123 0.99588 1.21682 0.96776 0.94958 0.93974 1.19131 0.96323 0.89346 1.07391 1.21276 0.81681 0.88359 0.73659 1.90805 1.28656 1.73683 1.47263 1.86595 1.39197 1.20574 1.77011 1.22763 0.98924 0.77308 1.02910 1.19180 0.88834 0.82983 0.85669 1.90602 1.36117 1.62664 1.54465 1.42030 1.13957 1.05520 1.60465 1.19422 0.91054 0.91638 1.41456 0.85994 1.25040 0.97297 0.96455 0.97137 1.69612 1.26130 1.11429 1.44264 0.86679 0.82431 0.81038 0.79363 1.19413 1.19959 1.19344 1.21192 0.97923 0.93281 0.94965 1.20933 0.97366 0.94144 1.02541 0.92766 0.92319 0.91467 0.94915 0.90285 0.95037 0.90176 0.91615 0.92741 0.92279 0.93638 0.89259 0.85017 0.83622 0.89340 0.89328 0.79386 0.91402 0.84582 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.86 37.16 0.37 -0.47 16 2 C 0.05 0.27 5.56 -3.83 -0.02 0.25 16 3 N -0.53 -3.87 4.41 -236.07 -1.04 -4.91 16 4 C 0.05 0.31 5.51 -3.82 -0.02 0.29 16 5 C -0.15 -0.96 9.88 37.16 0.37 -0.59 16 6 C 0.09 0.61 4.95 -4.98 -0.02 0.59 16 7 C -0.05 -0.41 4.93 -104.53 -0.51 -0.92 16 8 C -0.11 -1.11 9.70 -39.64 -0.38 -1.49 16 9 C -0.06 -0.69 9.62 -39.17 -0.38 -1.07 16 10 C -0.12 -1.62 5.87 -104.98 -0.62 -2.23 16 11 C 0.51 8.25 7.90 34.61 0.27 8.52 16 12 O -0.51 -9.00 16.14 -19.24 -0.31 -9.32 16 13 O -0.32 -5.89 9.01 -47.18 -0.42 -6.31 16 14 C 0.06 1.07 5.95 36.00 0.21 1.29 16 15 C 0.45 10.45 7.86 -10.99 -0.09 10.37 16 16 O -0.56 -15.29 16.08 -14.12 -0.23 -15.51 16 17 N -0.58 -13.84 5.09 -10.97 -0.06 -13.90 16 18 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 19 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 20 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 21 N -0.88 -25.21 13.96 55.50 0.77 -24.43 16 22 Si 0.88 19.14 27.74 -169.99 -4.71 14.43 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 26 C -0.06 -0.61 9.60 -39.17 -0.38 -0.99 16 27 C -0.13 -1.17 8.26 -39.64 -0.33 -1.49 16 28 H 0.05 0.30 6.74 -51.93 -0.35 -0.05 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.18 8.06 -51.93 -0.42 -0.24 16 32 H 0.08 0.44 5.95 -51.93 -0.31 0.13 16 33 H 0.03 0.19 8.12 -51.93 -0.42 -0.23 16 34 H 0.08 0.61 6.15 -51.93 -0.32 0.29 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.31 6.29 -51.93 -0.33 -0.02 16 37 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.05 0.28 7.95 -51.93 -0.41 -0.13 16 39 H 0.09 0.57 6.34 -51.93 -0.33 0.24 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.15 1.92 7.61 -52.49 -0.40 1.52 16 42 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.37 7.76 5.76 -40.82 -0.24 7.53 16 45 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.14 1.43 7.65 -52.49 -0.40 1.03 16 47 H 0.13 0.83 8.04 -52.48 -0.42 0.41 16 LS Contribution 391.51 15.07 5.90 5.90 Total: -1.00 -33.27 391.51 -8.74 -42.01 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.86 Total: 7.66 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.78 Total: 4.38 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.32 Total: -43.24 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.96 Total: -31.14 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.27 -8.74 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801427675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.748 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds